A computational study of the interaction of the foot and mouth disease virus VP1 with monoclonal antibodies.

Abstract:

:Foot and mouth disease is caused by a non-enveloped virus (FMDV), which disposes several antigenic sites at the surface of their capsid proteins. The most relevant and immunodominant antigenic site of FMDV (site A or AnSA) includes a key virus-cell interaction element (RGD motif) located in the Viral Protein 1 (VP1), more precisely at the GH loop. AnSA includes a set of overlapped and mainly linear epitopes, which are the main targets of the humoral immune response. Taking advantage over specific structural features of the GH loop, we have evaluated the influence of every amino acid residue at AnSA in the interaction with 2 neutralizing antibodies by molecular modeling techniques. Additionally, we constructed diverse interaction complexes with multiple site A mutants and discussed about the structural influence of amino acidic insertions in such relevant antigenic site of FMDV. Our approach is in agreement with previous ELISA experiments and allows the understanding of how FMDV mutations may alter the interaction with different antibodies, as we can estimate the contribution of each amino acid to the interaction. Overall, our work contributes to the development of specific vaccination strategies for FMD control.

journal_name

J Immunol Methods

authors

Marrero R,Limardo RR,Carrillo E,König GA,Turjanski AG

doi

10.1016/j.jim.2015.06.008

subject

Has Abstract

pub_date

2015-10-01 00:00:00

pages

51-57

eissn

0022-1759

issn

1872-7905

pii

S0022-1759(15)30009-0

journal_volume

425

pub_type

杂志文章
  • Improvement of the sensitivity of mono- and bi-dimensional immunoelectrophoretic techniques by transfer onto nitrocellulose.

    abstract::The sensitivity of crossed immunoelectrophoresis (CIE) and rocket immunoelectrophoresis (RIE) does not usually permit the study of diluted protein solutions or the detection of trace components. Antigen-antibody precipitates obtained after immunoelectrophoresis were therefore dissociated and transferred from the agaro...

    journal_title:Journal of immunological methods

    pub_type: 杂志文章

    doi:10.1016/0022-1759(88)90163-9

    authors: Levasseur S,Sesboüé R,Salier JP,Diarra-Mehrpour M,Bourguignon J,Martin JP

    更新日期:1988-11-10 00:00:00

  • Solid-phase radioimmunoassay of herpes simplex virus IgG and IgM antibodies.

    abstract::A solid-phase radioimmunoassay for detection of herpes simplex virus-specific IgG and IgM antibodies in human serum specimens is presented. Virus antigen is adsorbed on polystyrene balls and antibodies which attach to the antigen are detected by 125I-labeled antihuman-gamma or antihuman-mu immunoglobulins. A total of ...

    journal_title:Journal of immunological methods

    pub_type: 杂志文章

    doi:10.1016/0022-1759(77)90008-4

    authors: Kalimo KO,Ziola BR,Viljanen MK,Granfors K,Toivanen P

    更新日期:1977-01-01 00:00:00

  • A one-step two-particle latex immunoassay for the detection of Salmonella typhi endotoxin.

    abstract::A simple and rapid test (LIMM, short for latex immunoassay) is described for detecting Salmonella typhi endotoxin. It involves the simultaneous binding of the antigen by two types of reagent particles contained in a micro-tube: an indicator latex particle coated with a monoclonal antibody specific for the O-9 determin...

    journal_title:Journal of immunological methods

    pub_type: 杂志文章

    doi:10.1016/0022-1759(90)90279-5

    authors: Lim PL

    更新日期:1990-12-31 00:00:00

  • Chemotaxis under agarose: dependence upon polymorphonuclear leukocyte density.

    abstract::Since the number of polymorphonuclear leukocytes (PMN) responding to a chemotactic stimulus in the Boyden chamber is influenced by the cell density, we studied whether this variable was important in determining chemotaxis under agarose. The chemotactic index was determined by summing the product of each cell that had ...

    journal_title:Journal of immunological methods

    pub_type: 杂志文章

    doi:10.1016/0022-1759(81)90292-1

    authors: Schaack TM,Persellin RH

    更新日期:1981-01-01 00:00:00

  • Optimization and testing of dried antibody tube: The EuroFlow LST and PIDOT tubes as examples.

    abstract::Within EuroFlow, we recently developed screening tubes for hematological malignancies and immune deficiencies. Pipetting of antibodies for such 8-color 12-marker tubes however is time-consuming and prone to operational mistakes. We therefore evaluated dried formats of the lymphocytosis screening tube (LST) and of the ...

    journal_title:Journal of immunological methods

    pub_type: 杂志文章

    doi:10.1016/j.jim.2017.03.011

    authors: van der Velden VHJ,Flores-Montero J,Perez-Andres M,Martin-Ayuso M,Crespo O,Blanco E,Kalina T,Philippé J,Bonroy C,de Bie M,Te Marvelde J,Teodosio C,Corral Mateos A,Kanderová V,van der Burg M,Van Hoof D,van Dongen JJM,Orf

    更新日期:2019-12-01 00:00:00

  • Rapid, sensitive detection of plasma IL-1 by extraction and bioassay.

    abstract::A method for separating IL-1 from plasma inhibitors by silica extraction has been developed and coupled to a highly sensitive bioassay using the LBRM TG6 cell line and the I1-2 dependent HT2A cell line. Using this assay we have detected IL-1 activity in plasma from patients undergoing elective surgery. ...

    journal_title:Journal of immunological methods

    pub_type: 杂志文章

    doi:10.1016/0022-1759(88)90399-7

    authors: Series JJ,Shapiro D,Cameron I,Smith J,Fraser WD,Garden OJ,Shenkin A

    更新日期:1988-04-06 00:00:00

  • Humanised mice have functional human neutrophils.

    abstract::The differences between murine and human neutrophils mean that findings in mice may not translate to humans, and therefore an in vivo model with human neutrophils would be an important methodological advance. We generated humanised mice by injecting human cord blood derived CD34+ stem cells into irradiated NOD-scid-γc...

    journal_title:Journal of immunological methods

    pub_type: 杂志文章

    doi:10.1016/j.jim.2012.08.005

    authors: Coughlan AM,Freeley SJ,Robson MG

    更新日期:2012-11-30 00:00:00

  • Antigen-induced proliferation of murine T-lymphocytes in vitro. I. Characterization of the lymphocyte culture system.

    abstract::The present report describes further improvements in the methodology for antigen-specific T-lymphocyte activation in vitro. Following the experimental protocol, large numbers of enriched T-lymphocytes can be obtained from the draining lymph nodes of immunized mice after purification on a nylon column. These T-cells re...

    journal_title:Journal of immunological methods

    pub_type: 杂志文章

    doi:10.1016/0022-1759(80)90177-5

    authors: Kagan J,Ben-Sasson SZ

    更新日期:1980-01-01 00:00:00

  • CD4 mAb induced apoptosis of peripheral T cells: multiparameter subpopulation analysis by flow cytometry using Attractors.

    abstract::Studies describing the induction of apoptosis for CD4 mAbs do not delineate between epitope-dependent and Fc-driven epitope cross-linking induced cell death. Keliximab and clenoliximab are two CD4 mAbs that differ only in their heavy chain isotypes, being an IgG1 and a modified IgG4, respectively. These antibodies sup...

    journal_title:Journal of immunological methods

    pub_type: 杂志文章

    doi:10.1016/s0022-1759(01)00447-1

    authors: Fishman-Lobell J,Tsui P,Reddy M,DiPrinzio R,Eichman C,Sweet RW,Truneh A

    更新日期:2001-11-01 00:00:00

  • Description of a novel multiplex avidity assay for evaluating HPV antibodies.

    abstract::Limited data exists regarding antibody avidity for human papillomavirus (HPV). We describe development of a multiplex electrochemiluminescent avidity ELISA for four HPV types (HPV 6, 11, 16, 18) by adding a dissociating step to our established multiplex HPV VLP ELISA. Initial experiments exploring ammonium thiocyanate...

    journal_title:Journal of immunological methods

    pub_type: 杂志文章

    doi:10.1016/j.jim.2017.04.004

    authors: Brady AM,Unger ER,Panicker G

    更新日期:2017-08-01 00:00:00

  • ELISpot analysis of LPS-stimulated leukocytes: human granulocytes selectively secrete IL-8, MIP-1beta and TNF-alpha.

    abstract::Granulocytes and monocytes/macrophages represent key effector cells of the innate immune system. While human monocytes have been recognized as capable of secreting a broad spectrum of cytokines, the situation has been less clear in granulocytes with studies often showing conflicting results. In this study, lipopolysac...

    journal_title:Journal of immunological methods

    pub_type: 杂志文章

    doi:10.1016/j.jim.2009.04.001

    authors: Smedman C,Gårdlund B,Nihlmark K,Gille-Johnson P,Andersson J,Paulie S

    更新日期:2009-07-31 00:00:00

  • An anti-cytokine bioactivity assay for interferons-alpha, -beta and -omega.

    abstract::Interferons-alpha and -beta (IFN-alpha and -beta) are cytokines that are widely known to induce potent anti-viral activity. However, it has become increasingly apparent that IFN-alpha and -beta exert a variety of other biological effects, including anti-tumour and immunomodulatory activities and are increasingly used ...

    journal_title:Journal of immunological methods

    pub_type: 杂志文章

    doi:10.1016/0022-1759(96)00092-0

    authors: Mire-Sluis AR,Page LA,Meager A,Igaki J,Lee J,Lyons S,Thorpe R

    更新日期:1996-09-09 00:00:00

  • The effect of antigen cross-linking on the sensitivity of the enzyme-linked immunosorbent assay.

    abstract::To investigate the effects of antigen cross-linking on ELISA results, we assayed antibodies to several purified antigens, using microtitration trays coated with antigens in their native and cross-linked forms. Cross-linking was achieved by a carbodiimide promoted condensation reaction. For several antigens an increase...

    journal_title:Journal of immunological methods

    pub_type: 杂志文章

    doi:10.1016/0022-1759(84)90389-2

    authors: Rotmans JP,Scheven BA

    更新日期:1984-05-11 00:00:00

  • A novel approach using streptavidin magnetic bead-sorted in vivo biotinylated survivin for monoclonal antibody production.

    abstract::One major obstacle in antibody production is the lack of highly purified immunogen. In this study, we describe an alternative strategy to circumvent this problem. A nucleotide sequence encoding a full-length of human survivin was cloned into pAK400cb. After transforming into an E. coli Origami B strain, survivin-bioti...

    journal_title:Journal of immunological methods

    pub_type: 杂志文章

    doi:10.1016/j.jim.2006.07.024

    authors: Tayapiwatana C,Chotpadiwetkul R,Kasinrerk W

    更新日期:2006-12-20 00:00:00

  • Intranasal immunization with a plant virus expressing a peptide from HIV-1 gp41 stimulates better mucosal and systemic HIV-1-specific IgA and IgG than oral immunization.

    abstract::Control of pandemic human immunodeficiency virus type 1 (HIV-1) infection ideally requires specific mucosal immunity to protect the genital regions through which transmission more often occurs. Thus a vaccine that stimulates a disseminated mucosal and systemic protective immune response would be extremely useful. Here...

    journal_title:Journal of immunological methods

    pub_type: 杂志文章

    doi:10.1016/s0022-1759(98)00145-8

    authors: Durrani Z,McInerney TL,McLain L,Jones T,Bellaby T,Brennan FR,Dimmock NJ

    更新日期:1998-11-01 00:00:00

  • Thaw-and-use target cells pre-labeled with calcein AM for antibody-dependent cell-mediated cytotoxicity assays.

    abstract::In vitro antibody-dependent cell-mediated cytotoxicity (ADCC) assays are routinely performed to support the research and development of therapeutic antibodies. In ADCC assays, target cells bound by the antibodies are lysed by activated effector cells following interactions between the Fc region of the bound antibody a...

    journal_title:Journal of immunological methods

    pub_type: 杂志文章

    doi:10.1016/j.jim.2017.04.005

    authors: Chung S,Nguyen V,Lin YL,Kamen L,Song A

    更新日期:2017-08-01 00:00:00

  • Measuring bonds between surface-associated molecules.

    abstract::Adhesive interactions play an essential role in immune function. Much information on these phenomena was recently obtained by applying sophisticated methods such as the surface forces apparatus, atomic force microscopy, lipid vesicle-based technology or flow chambers. In the present review it is shown that the use of ...

    journal_title:Journal of immunological methods

    pub_type: 杂志文章,评审

    doi:10.1016/0022-1759(96)00103-2

    authors: Pierres A,Benoliel AM,Bongrand P

    更新日期:1996-09-27 00:00:00

  • Sensitive recovery of recombinant antibody clones after their in silico identification within NGS datasets.

    abstract::Recently the analytical power of the latest high throughput next generation DNA sequencing platforms has been used to analyse phage that have been selected from the panning of large combinatorial libraries displaying either peptide or antibody ligands. This process, commonly referred to as next generation phage displa...

    journal_title:Journal of immunological methods

    pub_type: 杂志文章

    doi:10.1016/j.jim.2015.03.005

    authors: Spiliotopoulos A,Owen JP,Maddison BC,Dreveny I,Rees HC,Gough KC

    更新日期:2015-05-01 00:00:00

  • A rapid method for quantitation of antiviral antibodies.

    abstract::This paper examines the parameters necessary for the efficient measurement of anti-Theiler's murine encephalomyelitis virus (TMEV) antibodies in an affinity-dependent manner using a variation of a solid-phase particle concentration fluorescence immunoassay (PCFIA). By allowing antibody to react with fluorochrome-label...

    journal_title:Journal of immunological methods

    pub_type: 杂志文章

    doi:10.1016/0022-1759(89)90384-0

    authors: Peterson JD,Kim JY,Melvold RW,Miller SD,Waltenbaugh C

    更新日期:1989-04-21 00:00:00

  • Cryopreservation of mouse peritoneal macrophages.

    abstract::A method for the preservation of mouse peritoneal macrophages is described. Using 5% dimethylsulphoxide with either a cooling rate of 1 degree C/min or two-step cooling with 10 min interruption at -30 degrres C allows 80% survival as judged by pinocytic activity. An important finding was that the cells must be handled...

    journal_title:Journal of immunological methods

    pub_type: 杂志文章

    doi:10.1016/0022-1759(77)90139-9

    authors: Foreman S,Schorlemmer HU,Farrant J,Pegg DE,Allison AC

    更新日期:1977-01-01 00:00:00

  • Direct and indirect immunofluorescence analysis of bacterial populations by flow cytometry.

    abstract::Bacillus anthracis spores and Escherichia coli were stained with fluorescein-conjugated antibody using direct and indirect methods, then analyzed by means of a commercial flow cytometer. To reduce the cytometer's fluorescence component resulting from unreacted conjugate, reaction mixtures were either diluted or were c...

    journal_title:Journal of immunological methods

    pub_type: 杂志文章

    doi:10.1016/0022-1759(87)90153-0

    authors: Phillips AP,Martin KL,Capey AJ

    更新日期:1987-08-03 00:00:00

  • Double fluorescence technique for measurement of complement-fixing antibody to lymphocyte subsets.

    abstract::A double fluorescent antibody method for quantitating human complement-fixing antibody to lymphocyte subclasses has been developed. The indicators in this system are a C6-deficient serum as a non-lytic source of complement, rhodamine-labeled anti-C3 and fluorescein-labeled murine monoclonal antibodies to human lymphoc...

    journal_title:Journal of immunological methods

    pub_type: 杂志文章

    doi:10.1016/0022-1759(85)90284-4

    authors: Ozturk GE,Hayward AR,Weil R 3rd,Kohler PF

    更新日期:1985-12-17 00:00:00

  • Development of improved soluble inhibitors of FasL and CD40L based on oligomerized receptors.

    abstract::TNF receptor family members fused to the constant domain of immunoglobulin G have been widely used as immunoadhesins in basic in vitro and in vivo research and in some clinical applications. In this study, we assemble soluble, high avidity chimeric receptors on a pentameric scaffold derived from the coiled-coil domain...

    journal_title:Journal of immunological methods

    pub_type: 杂志文章

    doi:10.1016/s0022-1759(99)00239-2

    authors: Holler N,Kataoka T,Bodmer JL,Romero P,Romero J,Deperthes D,Engel J,Tschopp J,Schneider P

    更新日期:2000-04-03 00:00:00

  • An antiglobulin microcytotoxicity assay to analyze non-complement fixing monoclonal antibodies to human histocompatibility antigens.

    abstract::An antiglobulin microcytotoxicity assay has been used to analyze non-complement fixing monoclonal antibodies to human histocompatibility antigens. The assay utilizes methodology similar to that of the widely used microcytotoxicity assay for HLA typing, requires low numbers of target cells and is suitable to test large...

    journal_title:Journal of immunological methods

    pub_type: 杂志文章

    doi:10.1016/0022-1759(82)90270-8

    authors: Pellegrino M,Russo C,Ng AK,Pellegrino AG,Ferrone S

    更新日期:1982-03-12 00:00:00

  • Immunoassays for inhibin and its subunits. Further applications of the synthetic peptide approach.

    abstract::We describe the preparation of a new rat monoclonal antibody (CRC1) to the N-terminal sequence of the 43 kDa subunit of human ovarian inhibin, and its use together with other anti-peptide monoclonal antibodies, in two-site immunoassays for the detection of inhibin-related material in biological fluids. The Fab fractio...

    journal_title:Journal of immunological methods

    pub_type: 杂志文章

    doi:10.1016/0022-1759(93)90342-5

    authors: Groome N,O'Brien M

    更新日期:1993-10-15 00:00:00

  • A method for the production of cryopreserved aliquots of antigen-preloaded, mature dendritic cells ready for clinical use.

    abstract::Dendritic cells (DC) are increasingly used as a vaccine. Unfortunately, a satisfactory cryopreservation of DC in the absence of FCS is not yet available, so that laborious repeated generation of DC from fresh blood or frozen peripheral blood mononuclear cells for each vaccination has been required to date. We now aime...

    journal_title:Journal of immunological methods

    pub_type: 杂志文章

    doi:10.1016/s0022-1759(00)00269-6

    authors: Feuerstein B,Berger TG,Maczek C,Röder C,Schreiner D,Hirsch U,Haendle I,Leisgang W,Glaser A,Kuss O,Diepgen TL,Schuler G,Schuler-Thurner B

    更新日期:2000-11-01 00:00:00

  • Qualitative analysis of antibody binding. An in vitro assay for the evaluation and development of vaccines.

    abstract::We describe a rapid in vitro assay for the evaluation of in vivo properties of conjugate vaccines. Using human and murine monoclonal antibodies (mAb) specific for lipopolysaccharides (LPS), isolated from Pseudomonas aeruginosa, we determined in a competitive binding assay the amount of LPS or conjugate vaccine which w...

    journal_title:Journal of immunological methods

    pub_type: 杂志文章

    doi:10.1016/0022-1759(90)90367-5

    authors: Bruderer U,Fürer E,Cryz SJ Jr,Lang AB

    更新日期:1990-10-19 00:00:00

  • Generation of procoagulant activity by mononuclear phagocytes: optimisation of an in vitro assay.

    abstract::Leucocyte procoagulant activity (PCA) has previously been advocated as a useful measurement of cell-mediated immune reactivity. The assay is, however, susceptible to inter- and intra-experimental variation. This investigation identifies several factors which influence the stability and reproducibility of the test. Maj...

    journal_title:Journal of immunological methods

    pub_type: 杂志文章

    doi:10.1016/0022-1759(85)90151-6

    authors: Morrice LM,McIntosh LC,Webster LM,Thomson AW

    更新日期:1985-12-27 00:00:00

  • Inductively coupled plasma mass spectrometry assay for quantification of free infliximab in serum.

    abstract::TNF antagonists such as infliximab are effective for the treatment of several inflammatory and autoimmune diseases. Recent clinical studies have advocated the importance of measuring trough infliximab levels to guide treatment decisions. We have developed a novel assay for measuring serum free infliximab levels using ...

    journal_title:Journal of immunological methods

    pub_type: 杂志文章

    doi:10.1016/j.jim.2019.04.008

    authors: Pavlov IY,Parker RL,Lázár-Molnár E,Strathmann FG,Delgado JC

    更新日期:2019-07-01 00:00:00

  • Toxicity of Na251CrO4 when used to label rat lymphocytes.

    abstract::Lymphocytes preincubated with various activities of Na251CrO4 were tested for their ability to induce a local, popliteal lymph node graft-versus-host (GVH) reaction. Incubation with 100 micronCi of the isotope per ml of cell suspension impaired the GVH activity, 25 micronCi gave a reduced response in 1 out of 3 experi...

    journal_title:Journal of immunological methods

    pub_type: 杂志文章

    doi:10.1016/0022-1759(78)90153-9

    authors: Rolstad B,Toogood E

    更新日期:1978-01-01 00:00:00