Escherichia coli diversity in the lower intestinal tract of humans.

abstract：:Many species in the order Bacillales form a specialized cell type called a spore that is resistant to a range of environmental stresses. Transmission electron microscopy (TEM) reveals that the spore is comprised of a series of concentric shells, surrounding an interior compartment harbouring the spore DNA. The outermo...

journal_title：Environmental microbiology reports

authors： de Andrade Cavalcante D,De-Souza MT,de Orem JC,de Magalhães MIA,Martins PH,Boone TJ,Castillo JA,Driks A

更新日期：2019-04-01 00:00:00

abstract：:Anaerobic ammonium-oxidizing (anammox) bacteria affiliated with the genus 'Candidatus Scalindua' are responsible for significant nitrogen loss in oceans, and thus their ecophysiology is of great interest. Here, we enriched a marine anammox bacterium, 'Ca. S. japonica' from a Hiroshima bay sediment in Japan, and compar...

journal_title：Environmental microbiology reports

authors： Oshiki M,Mizuto K,Kimura ZI,Kindaichi T,Satoh H,Okabe S

更新日期：2017-10-01 00:00:00

abstract：:The trophic interactions between viruses, bacteria and protists play a crucial role in structuring microbial communities and regulating nutrient and organic matter flux. Here, we show that the impact on viral density by heterotrophic flagellates is related to their feeding behaviour (feeding on sedimented particles - ...

journal_title：Environmental microbiology reports

authors： Deng L,Krauss S,Feichtmayer J,Hofmann R,Arndt H,Griebler C

更新日期：2014-08-01 00:00:00

abstract：:In anoxic environments such as swamps, rice fields and sludge digestors, syntrophic microbial communities are important for decomposition of organic matter to CO2 and CH4 . The most difficult step is the fermentative degradation of short-chain fatty acids such as propionate and butyrate. Conversion of these metabolite...

journal_title：Environmental microbiology reports

authors： Müller N,Worm P,Schink B,Stams AJ,Plugge CM

更新日期：2010-08-01 00:00:00

abstract：:Mycophagous (=fungus feeding) soil bacteria of the genus Collimonas have been shown to colonize and grow on hyphae of different fungal hosts as the only source of energy and carbon. The ability to exploit fungal nutrient resources might require a strategy for collimonads to sense fungi in the soil matrix. Oxalic acid ...

journal_title：Environmental microbiology reports

authors： Rudnick MB,van Veen JA,de Boer W

更新日期：2015-10-01 00:00:00

abstract：:Interpretation of bacteriohopanepolyol (BHP) biomarkers tracing microbiological processes in modern and ancient sediments relies on understanding environmental controls of production and preservation. BHPs from methanotrophs (35-aminoBHPs) were studied in methane-amended aerobic river-sediment incubations at different...

journal_title：Environmental microbiology reports

authors： Osborne KA,Gray ND,Sherry A,Leary P,Mejeha O,Bischoff J,Rush D,Sidgwick FR,Birgel D,Kalyuzhnaya MG,Talbot HM

更新日期：2017-10-01 00:00:00

abstract：:In this study, an aquaporin protein, Aqp1, in Cryptococcus neoformans, which can lead either saprobic or parasitic lifestyles and causes life-threatening fungal meningitis was identified and characterized. AQP1 expression was rapidly induced (via the HOG pathway) by osmotic or oxidative stress. In spite of such transc...

journal_title：Environmental microbiology reports

authors： Meyers GL,Jung KW,Bang S,Kim J,Kim S,Hong J,Cheong E,Kim KH,Bahn YS

更新日期：2017-06-01 00:00:00

abstract：:As key components of the electron transfer (ET) pathways used for dissimilatory reduction of solid iron [Fe(III)] (hydr)oxides, outer membrane multihaem c-type cytochromes MtrC and OmcA of Shewanella oneidensis MR-1 and OmcE and OmcS of Geobacter sulfurreducens mediate ET reactions extracellularly. Both MtrC and OmcA ...

journal_title：Environmental microbiology reports

authors： Shi L,Richardson DJ,Wang Z,Kerisit SN,Rosso KM,Zachara JM,Fredrickson JK

更新日期：2009-08-01 00:00:00

abstract：:In this study, we report the presence of the El Tor CTXΦ and classical CTXΦ in Vibrio cholerae O1 strains isolated from Varanasi, India. Polymerase chain reaction, DNA sequencing and restriction fragment length polymorphism revealed that, although ctx-positive strains isolated after 1990 contain CTXΦ harbouring El Tor...

journal_title：Environmental microbiology reports

authors： Mohapatra SS,Mantri CK,Turabe Fazil MH,Singh DV

更新日期：2011-12-01 00:00:00

abstract：:Microbial communities play important roles in the biogeochemical cycling of carbon in the Earth's deep subsurface. Previously, we demonstrated changes to the microbial community structure of a deep aquifer (1.4 km) receiving 150 tons of injected supercritical CO2 (scCO2 ) in a geosequestration experiment. The observed...

journal_title：Environmental microbiology reports

authors： Mu A,Thomas BC,Banfield JF,Moreau JW

更新日期：2020-10-01 00:00:00

abstract：:Vibrio vulnificus, an inhabitant of marine and estuarine environments around the world, is the leading cause of reported seafood-related deaths in the United States. Disease is caused by opaque colony-forming strains that produce capsular polysaccharide, loss of which results in an unencapsulated translucent phenotype...

journal_title：Environmental microbiology reports

authors： Kaluskar ZM,Garrison-Schilling KL,McCarter KS,Lambert B,Simar SR,Pettis GS

更新日期：2015-10-01 00:00:00

abstract：:KaiC protein is the pivotal component of the circadian clock in cyanobacteria. While KaiC family proteins are well-conserved throughout divergent phylogenetic lineages, studies of the physiological roles of KaiC proteins from other microorganisms have been limited. We examined the role of the KaiC proteins, KaiC1 and ...

journal_title：Environmental microbiology reports

authors： Iguchi H,Yoshida Y,Fujisawa K,Taga H,Yurimoto H,Oyama T,Sakai Y

更新日期：2018-12-01 00:00:00

abstract：:Ectosymbiotic Nanoarchaeota live on the surface of diverse archaeal hosts. Despite being broadly distributed in global geothermal systems, only three Nanoarchaeota have been successfully co-cultivated with their hosts, and until now no nanoarchaeotal cultures or genomes have been described from deep-sea hydrothermal v...

journal_title：Environmental microbiology reports

authors： St John E,Flores GE,Meneghin J,Reysenbach AL

更新日期：2019-04-01 00:00:00

abstract：:The Epsilonproteobacteria, including members of the genus Sulfurovum, are regarded as important primary producers in hydrothermal systems. However, their in situ gene expression in this habitat has so far not been investigated. We report a metatranscriptomic analysis of a Sulfurovum-dominated biofilm from one of the c...

journal_title：Environmental microbiology reports

authors： Dahle H,Roalkvam I,Thorseth IH,Pedersen RB,Steen IH

更新日期：2013-04-01 00:00:00

abstract：:The increase in the areal extent of the subtropical gyres over the past decade has been attributed to a global tendency towards increased water-column stratification. Here, we examine how vertical stratification governs the community structure of the picophytoplankton that dominate these vast marine ecosystems. We ana...

journal_title：Environmental microbiology reports

authors： Bouman HA,Ulloa O,Barlow R,Li WK,Platt T,Zwirglmaier K,Scanlan DJ,Sathyendranath S

更新日期：2011-08-01 00:00:00

abstract：:Dehalococcoides mccartyi is a small, slow-growing bacterium of the phylum Chloroflexi that conserves energy using aliphatic and aromatic organohalides as electron acceptors, and hydrogen as sole electron donor. A recent study identified a protein complex in the membrane of strain CBDB1 comprising a Hup hydrogenase, a ...

journal_title：Environmental microbiology reports

authors： Hartwig S,Dragomirova N,Kublik A,Türkowsky D,von Bergen M,Lechner U,Adrian L,Sawers RG

更新日期：2017-10-01 00:00:00

abstract：:Corals are inhabited by complex communities of microbes that affect their growth and survival. Several studies suggest that coral disease may be attributed to the success of vibrios in out-competing other bacteria in the mucus and tissues of corals. Vibrios utilize a variety of quorum sensing (QS) signal molecules to ...

journal_title：Environmental microbiology reports

authors： Tait K,Hutchison Z,Thompson FL,Munn CB

更新日期：2010-02-01 00:00:00

abstract：:Although dissimilatory sulfate-reducing bacteria (SRB) are generally described as strictly anaerobic organisms with regard to growth, several reports have shown that some SRB, particularly Desulfovibrio species, are quite resistant to O2 . For example, SRB remain viable in many aerobic environments while some even red...

journal_title：Environmental microbiology reports

authors： Lefèvre CT,Howse PA,Schmidt ML,Sabaty M,Menguy N,Luther GW 3rd,Bazylinski DA

更新日期：2016-12-01 00:00:00

abstract：:Free-living bacteria such as Pseudomonas putida are frequently exposed to temperature shifts and non-optimal growth conditions. We compared the transcriptome and metabolome of the cold adaptation of P. putida KT2440 and isogenic cold-sensitive transposon mutants carrying transposons in their cbrA, cbrB, pcnB, vacB, an...

journal_title：Environmental microbiology reports

authors： Dethlefsen S,Jäger C,Klockgether J,Schomburg D,Tümmler B

更新日期：2019-12-01 00:00:00

abstract：:The metabolism of cholesterol in Mycobacterium smegmatis mc(2) 155 has been investigated by using a microarray approach. The transcriptome of M. smegmatis growing in cholesterol was compared with that of cells growing in glycerol as the sole carbon and energy sources during the middle exponential phase. Microarray ana...

journal_title：Environmental microbiology reports

authors： Uhía I,Galán B,Kendall SL,Stoker NG,García JL

更新日期：2012-04-01 00:00:00

abstract：:Lack of the Pseudomonas putida PP2258 protein or its overexpression results in defective motility on solid media. The PP2258 protein is tripartite, possessing a PAS domain linked to two domains associated with turnover of c-di-GMP - a cyclic nucleotide that controls the switch between motile and sessile lifestyles. Th...

journal_title：Environmental microbiology reports

authors： Österberg S,Åberg A,Herrera Seitz MK,Wolf-Watz M,Shingler V

更新日期：2013-08-01 00:00:00

abstract：:In the last few years, geomicrobiologists have focused their researches on the nature and origin of enigmatic reticulated filaments reported in modern and fossil samples from limestone caves and basalt lava tubes. Researchers have posed questions on these filaments concerning their nature, origin, chemistry, morpholog...

journal_title：Environmental microbiology reports

authors： Miller AZ,Hernández-Mariné M,Jurado V,Dionísio A,Barquinha P,Fortunato E,Afonso MJ,Chaminé HI,Saiz-Jimenez C

更新日期：2012-12-01 00:00:00

abstract：:Honey is one of the most important agricultural products for export in Argentina. In fact, more than 3.5 million beehives and 50 000 beekeepers are related with this production, mainly located in Buenos Aires province. Honeybee mortality is a serious problem that beekeepers in Argentina have had to face during the las...

journal_title：Environmental microbiology reports

authors： Reynaldi FJ,Sguazza GH,Pecoraro MR,Tizzano MA,Galosi CM

更新日期：2010-12-01 00:00:00

abstract：:For many centuries, hops (Humulus lupulus L.) have been used as essential ingredient in beers, providing the typical bitterness and hoppy flavour. However, the last few years the plant has gained increasing attention as a source of prenylflavonoids and in 1999, 8-prenylnaringenin (8-PN) was identified as the most pote...

journal_title：Environmental microbiology reports

authors： Possemiers S,Verstraete W

更新日期：2009-04-01 00:00:00

abstract：:The microorganisms responsible for anaerobic oxidation of methane (AOM) coupled to denitrification have not been clearly elucidated. Three recent publications suggested it can be achieved by a denitrifying bacterium with or without the involvement of anaerobic methanotrophic archaea. A key factor limiting the progress...

journal_title：Environmental microbiology reports

authors： Hu S,Zeng RJ,Burow LC,Lant P,Keller J,Yuan Z

更新日期：2009-10-01 00:00:00

abstract：:'Bacterial consortium' sensu lato applies to mutualism or syntrophy-based systems consisting of unrelated bacteria. Consortia of cyanobacteria have been preferentially studied on Anabaena epibioses; non-photosynthetic satellites of other filamentous or unicellular cyanobacteria were also considered although structure-...

journal_title：Environmental microbiology reports

authors： Velichko N,Chernyaeva E,Averina S,Gavrilova O,Lapidus A,Pinevich A

更新日期：2015-08-01 00:00:00

abstract：:In this study, we investigated quorum sensing regulation of virulence genes in Vibrio harveyi by determining their expression levels, both in vitro and in vivo during infection of gnotobiotic brine shrimp. The quorum sensing master regulator luxR and the vhp metalloprotease showed around threefold and fivefold higher ...

journal_title：Environmental microbiology reports

authors： Ruwandeepika HA,Bhowmick PP,Karunasagar I,Bossier P,Defoirdt T

更新日期：2011-10-01 00:00:00

abstract：:Although cyanobacterial diazotrophs are common in Arctic terrestrial and freshwater habitats, they have been assumed to be absent from Arctic marine habitats. We report here a high diversity of cyanobacterial nifH genes in Fram Strait and the Greenland Sea. The nifH gene encodes the iron protein of the nitrogenase enz...

journal_title：Environmental microbiology reports

authors： Díez B,Bergman B,Pedrós-Alió C,Antó M,Snoeijs P

更新日期：2012-06-01 00:00:00

abstract：:Magnetotactic bacteria (MTB) biomineralize intracellular, membrane-bounded crystals of magnetite (Fe3 O4 ) and/or greigite (Fe3 S4 ) called magnetosomes. MTB play important roles in the geochemical cycling of iron, sulfur, nitrogen and carbon. Significantly, they also represent an intriguing model system not just for ...

journal_title：Environmental microbiology reports

authors： Lin W,Pan Y,Bazylinski DA

更新日期：2017-08-01 00:00:00

abstract：:Magnetotactic bacteria are capable of aligning and swimming along the geomagnetic field lines; such a behaviour is called magnetotaxis. Previous studies reported that bacteria in the northern hemisphere migrate preferentially towards the North Pole of the Earth's magnetic field (north-seeking, NS), whereas those in th...

journal_title：Environmental microbiology reports

authors： Zhang WJ,Chen C,Li Y,Song T,Wu LF

更新日期：2010-10-01 00:00:00