Segmental neurofibromatosis type 2: discriminating two hit from four hit in a patient presenting multiple schwannomas confined to one limb.

Abstract:

BACKGROUND:A clinical overlap exists between mosaic Neurofibromatosis Type 2 and sporadic Schwannomatosis conditions. In these cases a molecular analysis of tumors is recommended for a proper genetic diagnostics. This analysis is challenged by the fact that schwannomas in both conditions bear a somatic double inactivation of the NF2 gene. However, SMARCB1-associated schwannomas follow a four-hit, three-step model, in which both alleles of SMARCB1 and NF2 genes are inactivated in the tumor, with one of the steps being always the loss of a big part of chromosome 22 involving both loci. CASE PRESENTATION:Here we report a 36-year-old woman who only presented multiple subcutaneous schwannomas on her right leg. To help discriminate between both possible diagnoses, an exhaustive molecular genetic and genomic analysis was performed on two schwannomas of the patient, consisting in cDNA and DNA sequencing, MLPA, microsatellite multiplex PCR and SNP-array analyses. The loss of a big part of chromosome 22 (22q12.1q13.33) was identified in both tumors. However, this loss involved the NF2 but not the SMARCB1 locus. SNP-array analysis revealed the presence of the same deletion breakpoint in both schwannomas, indicating that this alteration was actually the first NF2 inactivating hit. In addition, a distinct NF2 point mutation in each tumor was identified, representing independent second hits. In accordance with these results, no deletions or point mutations in the SMARCB1 gene were identified. None of the mutations were present in the blood. Two of the patient's children inherited chromosome 22 deleted in schwannomas of the mother, but in its wild type form. CONCLUSIONS:These results conclusively confirm the segmental mosaic NF2 nature of the clinical phenotype presented.

journal_name

BMC Med Genomics

journal_title

BMC medical genomics

authors

Castellanos E,Bielsa I,Carrato C,Rosas I,Solanes A,Hostalot C,Amilibia E,Prades J,Roca-Ribas F,Lázaro C,Blanco I,Serra E,NF2 Multidisciplinary Clinics HUGTiP-ICO-IMPPC.

doi

10.1186/s12920-015-0076-2

subject

Has Abstract

pub_date

2015-01-24 00:00:00

pages

2

issn

1755-8794

pii

s12920-015-0076-2

journal_volume

8

pub_type

杂志文章
  • African ancestry is associated with cluster-based childhood asthma subphenotypes.

    abstract:BACKGROUND:Childhood asthma is a syndrome composed of heterogeneous phenotypes; furthermore, intrinsic biologic variation among racial/ethnic populations suggests possible genetic ancestry variation in childhood asthma. The objective of the study is to identify clinically homogeneous asthma subphenotypes in a diverse s...

    journal_title:BMC medical genomics

    pub_type: 杂志文章

    doi:10.1186/s12920-018-0367-5

    authors: Ding L,Li D,Wathen M,Altaye M,Mersha TB

    更新日期:2018-05-31 00:00:00

  • Whole exome sequencing in adult-onset hearing loss reveals a high load of predicted pathogenic variants in known deafness-associated genes and identifies new candidate genes.

    abstract:BACKGROUND:Deafness is a highly heterogenous disorder with over 100 genes known to underlie human non-syndromic hearing impairment. However, many more remain undiscovered, particularly those involved in the most common form of deafness: adult-onset progressive hearing loss. Despite several genome-wide association studi...

    journal_title:BMC medical genomics

    pub_type: 杂志文章

    doi:10.1186/s12920-018-0395-1

    authors: Lewis MA,Nolan LS,Cadge BA,Matthews LJ,Schulte BA,Dubno JR,Steel KP,Dawson SJ

    更新日期:2018-09-04 00:00:00

  • Gene expression signatures in childhood acute leukemias are largely unique and distinct from those of normal tissues and other malignancies.

    abstract:BACKGROUND:Childhood leukemia is characterized by the presence of balanced chromosomal translocations or by other structural or numerical chromosomal changes. It is well know that leukemias with specific molecular abnormalities display profoundly different global gene expression profiles. However, it is largely unknown...

    journal_title:BMC medical genomics

    pub_type: 杂志文章

    doi:10.1186/1755-8794-3-6

    authors: Andersson A,Edén P,Olofsson T,Fioretos T

    更新日期:2010-03-08 00:00:00

  • Pharmacogenetic testing through the direct-to-consumer genetic testing company 23andMe.

    abstract:BACKGROUND:Rapid advances in scientific research have led to an increase in public awareness of genetic testing and pharmacogenetics. Direct-to-consumer (DTC) genetic testing companies, such as 23andMe, allow consumers to access their genetic information directly through an online service without the involvement of hea...

    journal_title:BMC medical genomics

    pub_type: 杂志文章

    doi:10.1186/s12920-017-0283-0

    authors: Lu M,Lewis CM,Traylor M

    更新日期:2017-06-19 00:00:00

  • Integration of genomic copy number variations and chemotherapy-response biomarkers in pediatric sarcoma.

    abstract:BACKGROUND:While most pediatric sarcomas respond to front-line therapy, some bone sarcomas do not show radiographic response like soft-tissue sarcomas (rhabdomyosarccomas) but do show 90% necrosis. Though, new therapies are urgently needed to improve survival and quality of life in pediatric patients with sarcomas. Com...

    journal_title:BMC medical genomics

    pub_type: 杂志文章

    doi:10.1186/s12920-018-0456-5

    authors: Cheng L,Pandya PH,Liu E,Chandra P,Wang L,Murray ME,Carter J,Ferguson M,Saadatzadeh MR,Bijangi-Visheshsaraei K,Marshall M,Li L,Pollok KE,Renbarger JL

    更新日期:2019-01-31 00:00:00

  • Logistic regression over encrypted data from fully homomorphic encryption.

    abstract:BACKGROUND:One of the tasks in the 2017 iDASH secure genome analysis competition was to enable training of logistic regression models over encrypted genomic data. More precisely, given a list of approximately 1500 patient records, each with 18 binary features containing information on specific mutations, the idea was f...

    journal_title:BMC medical genomics

    pub_type: 杂志文章

    doi:10.1186/s12920-018-0397-z

    authors: Chen H,Gilad-Bachrach R,Han K,Huang Z,Jalali A,Laine K,Lauter K

    更新日期:2018-10-11 00:00:00

  • Key genes for modulating information flow play a temporal role as breast tumor coexpression networks are dynamically rewired by letrozole.

    abstract:BACKGROUND:Genes do not act in isolation but instead as part of complex regulatory networks. To understand how breast tumors adapt to the presence of the drug letrozole, at the molecular level, it is necessary to consider how the expression levels of genes in these networks change relative to one another. METHODS:Usin...

    journal_title:BMC medical genomics

    pub_type: 杂志文章

    doi:10.1186/1755-8794-6-S2-S2

    authors: Penrod NM,Moore JH

    更新日期:2013-01-01 00:00:00

  • Glucocorticoids with different chemical structures but similar glucocorticoid receptor potency regulate subsets of common and unique genes in human trabecular meshwork cells.

    abstract:BACKGROUND:In addition to their well-documented ocular therapeutic effects, glucocorticoids (GCs) can cause sight-threatening side-effects including ocular hypertension presumably via morphological and biochemical changes in trabecular meshwork (TM) cells. In the present study, we directly compared the glucocorticoid r...

    journal_title:BMC medical genomics

    pub_type: 杂志文章

    doi:10.1186/1755-8794-2-58

    authors: Nehmé A,Lobenhofer EK,Stamer WD,Edelman JL

    更新日期:2009-09-10 00:00:00

  • Controlling the signal: Practical privacy protection of genomic data sharing through Beacon services.

    abstract:BACKGROUND:Genomic data is increasingly collected by a wide array of organizations. As such, there is a growing demand to make summary information about such collections available more widely. However, over the past decade, a series of investigations have shown that attacks, rooted in statistical inference methods, can...

    journal_title:BMC medical genomics

    pub_type: 杂志文章

    doi:10.1186/s12920-017-0282-1

    authors: Wan Z,Vorobeychik Y,Kantarcioglu M,Malin B

    更新日期:2017-07-26 00:00:00

  • A systems biology approach to construct the gene regulatory network of systemic inflammation via microarray and databases mining.

    abstract:BACKGROUND:Inflammation is a hallmark of many human diseases. Elucidating the mechanisms underlying systemic inflammation has long been an important topic in basic and clinical research. When primary pathogenetic events remains unclear due to its immense complexity, construction and analysis of the gene regulatory netw...

    journal_title:BMC medical genomics

    pub_type: 杂志文章

    doi:10.1186/1755-8794-1-46

    authors: Chen BS,Yang SK,Lan CY,Chuang YJ

    更新日期:2008-09-30 00:00:00

  • Biological processes, properties and molecular wiring diagrams of candidate low-penetrance breast cancer susceptibility genes.

    abstract:BACKGROUND:Recent advances in whole-genome association studies (WGASs) for human cancer risk are beginning to provide the part lists of low-penetrance susceptibility genes. However, statistical analysis in these studies is complicated by the vast number of genetic variants examined and the weak effects observed, as a r...

    journal_title:BMC medical genomics

    pub_type: 杂志文章

    doi:10.1186/1755-8794-1-62

    authors: Bonifaci N,Berenguer A,Díez J,Reina O,Medina I,Dopazo J,Moreno V,Pujana MA

    更新日期:2008-12-18 00:00:00

  • Sex hormones and gene expression signatures in peripheral blood from postmenopausal women - the NOWAC postgenome study.

    abstract:BACKGROUND:Postmenopausal hormone therapy (HT) influences endogenous hormone concentrations and increases the risk of breast cancer. Gene expression profiling may reveal the mechanisms behind this relationship.Our objective was to explore potential associations between sex hormones and gene expression in whole blood fr...

    journal_title:BMC medical genomics

    pub_type: 杂志文章

    doi:10.1186/1755-8794-4-29

    authors: Waaseth M,Olsen KS,Rylander C,Lund E,Dumeaux V

    更新日期:2011-03-31 00:00:00

  • Pathway analysis of rare variants for the clustered phenotypes by using hierarchical structured components analysis.

    abstract:BACKGROUNDS:Recent large-scale genetic studies often involve clustered phenotypes such as repeated measurements. Compared to a series of univariate analyses of single phenotypes, an analysis of clustered phenotypes can be useful for substantially increasing statistical power to detect more genetic associations. Moreove...

    journal_title:BMC medical genomics

    pub_type: 杂志文章

    doi:10.1186/s12920-019-0517-4

    authors: Lee S,Kim S,Kim Y,Oh B,Hwang H,Park T

    更新日期:2019-07-11 00:00:00

  • A comparison of machine learning classifiers for dementia with Lewy bodies using miRNA expression data.

    abstract:BACKGROUND:Dementia with Lewy bodies (DLB) is the second most common subtype of neurodegenerative dementia in humans following Alzheimer's disease (AD). Present clinical diagnosis of DLB has high specificity and low sensitivity and finding potential biomarkers of prodromal DLB is still challenging. MicroRNAs (miRNAs) h...

    journal_title:BMC medical genomics

    pub_type: 杂志文章

    doi:10.1186/s12920-019-0607-3

    authors: Shigemizu D,Akiyama S,Asanomi Y,Boroevich KA,Sharma A,Tsunoda T,Sakurai T,Ozaki K,Ochiya T,Niida S

    更新日期:2019-10-30 00:00:00

  • Molecular conservation of estrogen-response associated with cell cycle regulation, hormonal carcinogenesis and cancer in zebrafish and human cancer cell lines.

    abstract:BACKGROUND:The zebrafish is recognized as a versatile cancer and drug screening model. However, it is not known whether the estrogen-responsive genes and signaling pathways that are involved in estrogen-dependent carcinogenesis and human cancer are operating in zebrafish. In order to determine the potential of zebrafis...

    journal_title:BMC medical genomics

    pub_type: 杂志文章

    doi:10.1186/1755-8794-4-41

    authors: Lam SH,Lee SG,Lin CY,Thomsen JS,Fu PY,Murthy KR,Li H,Govindarajan KR,Nick LC,Bourque G,Gong Z,Lufkin T,Liu ET,Mathavan S

    更新日期:2011-05-16 00:00:00

  • 12q14 microduplication: a new clinical entity reciprocal to the microdeletion syndrome?

    abstract:BACKGROUND:12q14 microdeletion syndrome is characterized by low birth weight and failure to thrive, proportionate short stature and developmental delay. The opposite syndrome (microduplication) has not yet been characterized. Our main objective is the recognition of a new clinical entity - 12q14 microduplication syndro...

    journal_title:BMC medical genomics

    pub_type: 杂志文章

    doi:10.1186/s12920-019-0653-x

    authors: Dória S,Alves D,Pinho MJ,Pinto J,Leão M

    更新日期:2020-01-03 00:00:00

  • Detecting early-warning signals of type 1 diabetes and its leading biomolecular networks by dynamical network biomarkers.

    abstract:BACKGROUND:Type 1 diabetes (T1D) is a complex disease and harmful to human health, and most of the existing biomarkers are mainly to measure the disease phenotype after the disease onset (or drastic deterioration). Until now, there is no effective biomarker which can predict the upcoming disease (or pre-disease state) ...

    journal_title:BMC medical genomics

    pub_type: 杂志文章

    doi:10.1186/1755-8794-6-S2-S8

    authors: Liu X,Liu R,Zhao XM,Chen L

    更新日期:2013-01-01 00:00:00

  • Molecular sampling of prostate cancer: a dilemma for predicting disease progression.

    abstract:BACKGROUND:Current prostate cancer prognostic models are based on pre-treatment prostate specific antigen (PSA) levels, biopsy Gleason score, and clinical staging but in practice are inadequate to accurately predict disease progression. Hence, we sought to develop a molecular panel for prostate cancer progression by re...

    journal_title:BMC medical genomics

    pub_type: 杂志文章

    doi:10.1186/1755-8794-3-8

    authors: Sboner A,Demichelis F,Calza S,Pawitan Y,Setlur SR,Hoshida Y,Perner S,Adami HO,Fall K,Mucci LA,Kantoff PW,Stampfer M,Andersson SO,Varenhorst E,Johansson JE,Gerstein MB,Golub TR,Rubin MA,Andrén O

    更新日期:2010-03-16 00:00:00

  • Routine use of microarray-based gene expression profiling to identify patients with low cytogenetic risk acute myeloid leukemia: accurate results can be obtained even with suboptimal samples.

    abstract:BACKGROUND:Gene expression profiling has shown its ability to identify with high accuracy low cytogenetic risk acute myeloid leukemia such as acute promyelocytic leukemia and leukemias with t(8;21) or inv(16). The aim of this gene expression profiling study was to evaluate to what extent suboptimal samples with low leu...

    journal_title:BMC medical genomics

    pub_type: 杂志文章

    doi:10.1186/1755-8794-5-6

    authors: de la Blétière DR,Blanchet O,Cornillet-Lefèbvre P,Coutolleau A,Baranger L,Geneviève F,Luquet I,Hunault-Berger M,Beucher A,Schmidt-Tanguy A,Zandecki M,Delneste Y,Ifrah N,Guardiola P

    更新日期:2012-01-30 00:00:00

  • Phenotype-driven gene prioritization for rare diseases using graph convolution on heterogeneous networks.

    abstract:BACKGROUND:One of the major goals of genomic medicine is the identification of causal genomic variants in a patient and their relation to the observed clinical phenotypes. Prioritizing the genomic variants by considering only the genotype information usually identifies a few hundred potential variants. Narrowing it dow...

    journal_title:BMC medical genomics

    pub_type: 杂志文章

    doi:10.1186/s12920-018-0372-8

    authors: Rao A,Vg S,Joseph T,Kotte S,Sivadasan N,Srinivasan R

    更新日期:2018-07-06 00:00:00

  • Within-pair differences of DNA methylation levels between monozygotic twins are different between male and female pairs.

    abstract:BACKGROUND:DNA methylation levels will be important for detection of epigenetic effects. However, there are few reports showing sex-related differences in the sensitivity to DNA methylation. To evaluate their sex-related individual differences in the sensitivity to methylation rigorously, we performed a systematic anal...

    journal_title:BMC medical genomics

    pub_type: 杂志文章

    doi:10.1186/s12920-016-0217-2

    authors: Watanabe M,Honda C,Osaka Twin Research Group.,Iwatani Y,Yorifuji S,Iso H,Kamide K,Hatazawa J,Kihara S,Sakai N,Watanabe H,Makimoto K,Watanabe M,Honda C,Iwatani Y

    更新日期:2016-08-26 00:00:00

  • Transcriptomic analysis of fetal membranes reveals pathways involved in preterm birth.

    abstract:BACKGROUND:Preterm birth (PTB), defined as infant delivery before 37 weeks of completed gestation, results from the interaction of both genetic and environmental components and constitutes a complex multifactorial syndrome. Transcriptome analysis of PTB has proven challenging because of the multiple causes of PTB and t...

    journal_title:BMC medical genomics

    pub_type: 杂志文章

    doi:10.1186/s12920-019-0498-3

    authors: Pereyra S,Sosa C,Bertoni B,Sapiro R

    更新日期:2019-04-01 00:00:00

  • Development of a blood-based gene expression algorithm for assessment of obstructive coronary artery disease in non-diabetic patients.

    abstract:BACKGROUND:Alterations in gene expression in peripheral blood cells have been shown to be sensitive to the presence and extent of coronary artery disease (CAD). A non-invasive blood test that could reliably assess obstructive CAD likelihood would have diagnostic utility. RESULTS:Microarray analysis of RNA samples from...

    journal_title:BMC medical genomics

    pub_type: 杂志文章

    doi:10.1186/1755-8794-4-26

    authors: Elashoff MR,Wingrove JA,Beineke P,Daniels SE,Tingley WG,Rosenberg S,Voros S,Kraus WE,Ginsburg GS,Schwartz RS,Ellis SG,Tahirkheli N,Waksman R,McPherson J,Lansky AJ,Topol EJ

    更新日期:2011-03-28 00:00:00

  • Genomics of drug sensitivity in bladder cancer: an integrated resource for pharmacogenomic analysis in bladder cancer.

    abstract:BACKGROUND:Bladder cancer has numerous genomic features that are potentially actionable by targeted agents. Nevertheless, both pre-clinical and clinical research using molecular targeted agents have been very limited in bladder cancer. RESULTS:We created the Genomics of Drug Sensitivity in Bladder Cancer (GDBC) databa...

    journal_title:BMC medical genomics

    pub_type: 杂志文章

    doi:10.1186/s12920-018-0406-2

    authors: Ansari AA,Park I,Kim I,Park S,Ahn SM,Lee JL

    更新日期:2018-10-03 00:00:00

  • A fast and high performance multiple data integration algorithm for identifying human disease genes.

    abstract:BACKGROUND:Integrating multiple data sources is indispensable in improving disease gene identification. It is not only due to the fact that disease genes associated with similar genetic diseases tend to lie close with each other in various biological networks, but also due to the fact that gene-disease associations are...

    journal_title:BMC medical genomics

    pub_type: 杂志文章

    doi:10.1186/1755-8794-8-S3-S2

    authors: Chen B,Li M,Wang J,Shang X,Wu FX

    更新日期:2015-01-01 00:00:00

  • Saliva sampling in global clinical studies: the impact of low sampling volume on performance of DNA in downstream genotyping experiments.

    abstract:BACKGROUND:The collection of viable DNA samples is an essential element of any genetics research programme. Biological samples for DNA purification are now routinely collected in many studies with a variety of sampling methods available. Initial observation in this study suggested a reduced genotyping success rate of s...

    journal_title:BMC medical genomics

    pub_type: 杂志文章

    doi:10.1186/1755-8794-6-20

    authors: Pulford DJ,Mosteller M,Briley JD,Johansson KW,Nelsen AJ

    更新日期:2013-06-10 00:00:00

  • DNA methylation changes in ovarian cancer are cumulative with disease progression and identify tumor stage.

    abstract:BACKGROUND:Hypermethylation of promoter CpG islands with associated loss of gene expression, and hypomethylation of CpG-rich repetitive elements that may destabilize the genome are common events in most, if not all, epithelial cancers. METHODS:The methylation of 6,502 CpG-rich sequences spanning the genome was analyze...

    journal_title:BMC medical genomics

    pub_type: 杂志文章

    doi:10.1186/1755-8794-1-47

    authors: Watts GS,Futscher BW,Holtan N,Degeest K,Domann FE,Rose SL

    更新日期:2008-09-30 00:00:00

  • Transcriptome profiling reveals significant changes in the gastric muscularis externa with obesity that partially overlap those that occur with idiopathic gastroparesis.

    abstract:BACKGROUND:Gastric emptying is impaired in patients with gastroparesis whereas it is either unchanged or accelerated in obese individuals. The goal of the current study was to identify changes in gene expression in the stomach muscularis that may be contributing to altered gastric motility in idiopathic gastroparesis a...

    journal_title:BMC medical genomics

    pub_type: 杂志文章

    doi:10.1186/s12920-019-0550-3

    authors: Herring BP,Chen M,Mihaylov P,Hoggatt AM,Gupta A,Nakeeb A,Choi JN,Wo JM

    更新日期:2019-06-20 00:00:00

  • Identification of lung cancer gene markers through kernel maximum mean discrepancy and information entropy.

    abstract:BACKGROUND:The early diagnosis of lung cancer has been a critical problem in clinical practice for a long time and identifying differentially expressed gene as disease marker is a promising solution. However, the most existing gene differential expression analysis (DEA) methods have two main drawbacks: First, these met...

    journal_title:BMC medical genomics

    pub_type: 杂志文章

    doi:10.1186/s12920-019-0630-4

    authors: Zhao Z,Peng H,Zhang X,Zheng Y,Chen F,Fang L,Li J

    更新日期:2019-12-20 00:00:00

  • Association of adipocyte genes with ASP expression: a microarray analysis of subcutaneous and omental adipose tissue in morbidly obese subjects.

    abstract:BACKGROUND:Prevalence of obesity is increasing to pandemic proportions. However, obese subjects differ in insulin resistance, adipokine production and co-morbidities. Based on fasting plasma analysis, obese subjects were grouped as Low Acylation Stimulating protein (ASP) and Triglyceride (TG) (LAT) vs High ASP and TG (...

    journal_title:BMC medical genomics

    pub_type: 杂志文章

    doi:10.1186/1755-8794-3-3

    authors: MacLaren RE,Cui W,Lu H,Simard S,Cianflone K

    更新日期:2010-01-27 00:00:00