A comparative study of ripening among berries of the grape cluster reveals an altered transcriptional programme and enhanced ripening rate in delayed berries.

Abstract:

:Transcriptional studies in relation to fruit ripening generally aim to identify the transcriptional states associated with physiological ripening stages and the transcriptional changes between stages within the ripening programme. In non-climacteric fruits such as grape, all ripening-related genes involved in this programme have not been identified, mainly due to the lack of mutants for comparative transcriptomic studies. A feature in grape cluster ripening (Vitis vinifera cv. Pinot noir), where all berries do not initiate the ripening at the same time, was exploited to study their shifted ripening programmes in parallel. Berries that showed marked ripening state differences in a véraison-stage cluster (ripening onset) ultimately reached similar ripeness states toward maturity, indicating the flexibility of the ripening programme. The expression variance between these véraison-stage berry classes, where 11% of the genes were found to be differentially expressed, was reduced significantly toward maturity, resulting in the synchronization of their transcriptional states. Defined quantitative expression changes (transcriptional distances) not only existed between the véraison transitional stages, but also between the véraison to maturity stages, regardless of the berry class. It was observed that lagging berries complete their transcriptional programme in a shorter time through altered gene expressions and ripening-related hormone dynamics, and enhance the rate of physiological ripening progression. Finally, the reduction in expression variance of genes can identify new genes directly associated with ripening and also assess the relevance of gene activity to the phase of the ripening programme.

journal_name

J Exp Bot

authors

Gouthu S,O'Neil ST,Di Y,Ansarolia M,Megraw M,Deluc LG

doi

10.1093/jxb/eru329

subject

Has Abstract

pub_date

2014-11-01 00:00:00

pages

5889-902

issue

20

eissn

0022-0957

issn

1460-2431

pii

eru329

journal_volume

65

pub_type

杂志文章
  • Uptake of sodium in protoplasts of salt-sensitive and salt-tolerant cultivars of rice, Oryza sativa L. determined by the fluorescent dye SBFI.

    abstract::In this study, the uptake of Na+ into the cytosol of rice (Oryza sativa L. cvs Pokkali and BRRI Dhan29) protoplasts was measured using the acetoxy methyl ester of the fluorescent sodium-binding benzofuran isopthalate, SBFI-AM, and fluorescence microscopy. By means of inhibitor analyses the mechanisms for uptake and se...

    journal_title:Journal of experimental botany

    pub_type: 杂志文章

    doi:10.1093/jxb/eri312

    authors: Kader MA,Lindberg S

    更新日期:2005-12-01 00:00:00

  • An Arabidopsis gene encoding a C2H2-domain protein with alternatively spliced transcripts is essential for endosperm development.

    abstract::The endosperm is an essential part of the seed which sustains embryo development and contains storage reserves. Endosperm development involves a series of nuclear divisions in the absence of cytokinesis. In this study, it is shown that a mutant Arabidopsis plant carrying the disrupted At4g24900 gene exhibits severe de...

    journal_title:Journal of experimental botany

    pub_type: 杂志文章

    doi:10.1093/jxb/ers243

    authors: Lu X,Li Y,Su Y,Liang Q,Meng H,Li S,Shen S,Fan Y,Zhang C

    更新日期:2012-10-01 00:00:00

  • An interspecific barberry hybrid enables genetic dissection of non-host resistance to the stem rust pathogen Puccinia graminis.

    abstract::Stem rust, caused by Puccinia graminis (Pg), remains a devastating disease of wheat, and the emergence of new Pg races virulent on deployed resistance genes fuels the ongoing search for sources of durable resistance. Despite its intrinsic durability, non-host resistance (NHR) is largely unexplored as a protection stra...

    journal_title:Journal of experimental botany

    pub_type: 杂志文章

    doi:10.1093/jxb/ery066

    authors: Bartaula R,Melo ATO,Connolly BA,Jin Y,Hale I

    更新日期:2018-04-27 00:00:00

  • Signalling of Arabidopsis thaliana response to Pieris brassicae eggs shares similarities with PAMP-triggered immunity.

    abstract::Insect egg deposition activates plant defence, but very little is known about signalling events that control this response. In Arabidopsis thaliana, oviposition by Pieris brassicae triggers salicylic acid (SA) accumulation and induces the expression of defence genes. This is similar to the recognition of pathogen-asso...

    journal_title:Journal of experimental botany

    pub_type: 杂志文章

    doi:10.1093/jxb/ers362

    authors: Gouhier-Darimont C,Schmiesing A,Bonnet C,Lassueur S,Reymond P

    更新日期:2013-01-01 00:00:00

  • To grow or not to grow: what can we learn on ethylene-gibberellin cross-talk by in silico gene expression analysis?

    abstract::Ethylene and gibberellins (GAs) are known to influence plant growth by mutual cross-talk and by interaction with other hormones. Transcript meta-analysis shows that GA and ethylene metabolism genes are expressed in the majority of plant organs. Both GAs and the ethylene precursor 1-amino-cyclopropane-1-carboxylic acid...

    journal_title:Journal of experimental botany

    pub_type: 杂志文章,评审

    doi:10.1093/jxb/erm349

    authors: Dugardeyn J,Vandenbussche F,Van Der Straeten D

    更新日期:2008-01-01 00:00:00

  • Expression of galactinol synthase from Ammopiptanthus nanus in tomato improves tolerance to cold stress.

    abstract::Soluble carbohydrates not only directly affect plant growth and development but also act as signal molecules in processes that enhance tolerance to cold stress. Raffinose family oligosaccharides (RFOs) are an example and play an important role in abiotic stress tolerance. This study aimed to determine whether galactin...

    journal_title:Journal of experimental botany

    pub_type: 杂志文章

    doi:10.1093/jxb/erz450

    authors: Liu Y,Zhang L,Meng S,Liu Y,Zhao X,Pang C,Zhang H,Xu T,He Y,Qi M,Li T

    更新日期:2020-01-01 00:00:00

  • Role of HSP101 in the stimulation of nodal root development from the coleoptilar node by light and temperature in maize (Zea mays L.) seedlings.

    abstract::Nodal roots (NRs) constitute the prevalent root system of adult maize plants. NRs emerge from stem nodes located below or above ground, and little is known about their inducing factors. Here, it is shown that precocious development of NRs at the coleoptilar node (NRCNs) occurred in maize seedlings when: (i) dark grown...

    journal_title:Journal of experimental botany

    pub_type: 杂志文章

    doi:10.1093/jxb/err186

    authors: López-Frías G,Martínez LM,Ponce G,Cassab GI,Nieto-Sotelo J

    更新日期:2011-08-01 00:00:00

  • NH4+-stimulated and -inhibited components of K+ transport in rice (Oryza sativa L.).

    abstract::The disruption of K(+) transport and accumulation is symptomatic of NH(4)(+) toxicity in plants. In this study, the influence of K(+) supply (0.02-40 mM) and nitrogen source (10 mM NH(4)(+) or NO(3)(-)) on root plasma membrane K(+) fluxes and cytosolic K(+) pools, plant growth, and whole-plant K(+) distribution in the...

    journal_title:Journal of experimental botany

    pub_type: 杂志文章

    doi:10.1093/jxb/ern190

    authors: Szczerba MW,Britto DT,Ali SA,Balkos KD,Kronzucker HJ

    更新日期:2008-01-01 00:00:00

  • Functional analysis of the isoforms of an ABI3-like factor of Pisum sativum generated by alternative splicing.

    abstract::At least seven isoforms (PsABI3-1 to PsABI3-7) of a putative, pea ABI3-like factor, originated by alternative splicing, have been identified after cDNA cloning. A similar variability had previously only been described for monocot genes. The full-length isoform, PsABI3-1, contains the typical N-terminal acidic domains ...

    journal_title:Journal of experimental botany

    pub_type: 杂志文章

    doi:10.1093/jxb/erp038

    authors: Gagete AP,Riera M,Franco L,Rodrigo MI

    更新日期:2009-01-01 00:00:00

  • How cell wall complexity influences saccharification efficiency in Miscanthus sinensis.

    abstract::The production of bioenergy from grasses has been developing quickly during the last decade, with Miscanthus being among the most important choices for production of bioethanol. However, one of the key barriers to producing bioethanol is the lack of information about cell wall structure. Cell walls are thought to disp...

    journal_title:Journal of experimental botany

    pub_type: 杂志文章

    doi:10.1093/jxb/erv183

    authors: De Souza AP,Alvim Kamei CL,Torres AF,Pattathil S,Hahn MG,Trindade LM,Buckeridge MS

    更新日期:2015-07-01 00:00:00

  • Nitrite and nitric oxide are important in the adjustment of primary metabolism during the hypersensitive response in tobacco.

    abstract::Nitrate and ammonia deferentially modulate primary metabolism during the hypersensitive response in tobacco. In this study, tobacco RNAi lines with low nitrite reductase (NiRr) levels were used to investigate the roles of nitrite and nitric oxide (NO) in this process. The lines accumulate NO2-, with increased NO gener...

    journal_title:Journal of experimental botany

    pub_type: 杂志文章

    doi:10.1093/jxb/erz161

    authors: Mur LAJ,Kumari A,Brotman Y,Zeier J,Mandon J,Cristescu SM,Harren F,Kaiser WM,Fernie AR,Gupta KJ

    更新日期:2019-08-29 00:00:00

  • Emissions of putative isoprene oxidation products from mango branches under abiotic stress.

    abstract::Although several per cent of net carbon assimilation can be re-released as isoprene emissions to the atmosphere by many tropical plants, much uncertainty remains regarding its biological significance. In a previous study, we detected emissions of isoprene and its oxidation products methyl vinyl ketone (MVK) and methac...

    journal_title:Journal of experimental botany

    pub_type: 杂志文章

    doi:10.1093/jxb/ert202

    authors: Jardine KJ,Meyers K,Abrell L,Alves EG,Yanez Serrano AM,Kesselmeier J,Karl T,Guenther A,Chambers JQ,Vickers C

    更新日期:2013-09-01 00:00:00

  • Elemental sulphur as an induced antifungal substance in plant defence.

    abstract::Man's oldest fungicide has probably long functioned in this role in plants, as a natural component of induced antifungal defence. Elemental sulphur (S(0)) is the only inorganic phytoalexin and the only phytoalexin produced by so many different taxa. S(0) (detected by GC-MS as (32)S(8)) is produced in representative sp...

    journal_title:Journal of experimental botany

    pub_type: 杂志文章,评审

    doi:10.1093/jxb/erh179

    authors: Cooper RM,Williams JS

    更新日期:2004-08-01 00:00:00

  • High-level overexpression of the Arabidopsis HsfA2 gene confers not only increased themotolerance but also salt/osmotic stress tolerance and enhanced callus growth.

    abstract::Heat shock transcription factors (Hsfs) are the central regulators of the heat shock (HS) stress response in all eukaryotic organisms. HsfA2 is one of the Arabidopsis class A Hsfs, and the induction of HsfA2 expression in response to HS stress is highest among all 21 Arabidopsis Hsfs. In this study, it is reported tha...

    journal_title:Journal of experimental botany

    pub_type: 杂志文章

    doi:10.1093/jxb/erm184

    authors: Ogawa D,Yamaguchi K,Nishiuchi T

    更新日期:2007-01-01 00:00:00

  • Classes of programmed cell death in plants, compared to those in animals.

    abstract::Relatively little is known about programmed cell death (PCD) in plants. It is nonetheless suggested here that tonoplast rupture and the subsequent rapid destruction of the cytoplasm can distinguish two large PCD classes. One class, which is here called 'autolytic', shows this feature, whilst the second class (called '...

    journal_title:Journal of experimental botany

    pub_type: 杂志文章,评审

    doi:10.1093/jxb/err196

    authors: van Doorn WG

    更新日期:2011-10-01 00:00:00

  • PME58 plays a role in pectin distribution during seed coat mucilage extrusion through homogalacturonan modification.

    abstract::Pectins are major components of plant primary cell walls. They include homogalacturonans (HGs), which are the most abundant pectin and can be the target of apoplastic enzymes like pectin methylesterases (PMEs) that control their methylesterification level. Several PMEs are expressed in the seed coat of Arabidopsis tha...

    journal_title:Journal of experimental botany

    pub_type: 杂志文章

    doi:10.1093/jxb/erw025

    authors: Turbant A,Fournet F,Lequart M,Zabijak L,Pageau K,Bouton S,Van Wuytswinkel O

    更新日期:2016-04-01 00:00:00

  • Mature embryo axis-based high frequency somatic embryogenesis and plant regeneration from multiple cultivars of barley (Hordeum vulgare L.).

    abstract::A highly reproducible regeneration system through somatic embryogenesis from the excised mature embryos (MEs) of dry seeds of a range of European barley cultivars was developed. By minimizing the germination of plated MEs, primary callus could be obtained with high frequency which permitted efficient embryogenesis and...

    journal_title:Journal of experimental botany

    pub_type: 杂志文章

    doi:10.1093/jxb/eri186

    authors: Sharma VK,Hänsch R,Mendel RR,Schulze J

    更新日期:2005-07-01 00:00:00

  • Metabolic characterization of loci affecting sensory attributes in tomato allows an assessment of the influence of the levels of primary metabolites and volatile organic contents.

    abstract::Numerous studies have revealed the extent of genetic and phenotypic variation between both species and cultivars of tomato. Using a series of tomato lines resulting from crosses between a cherry tomato and three independent large fruit cultivar (Levovil, VilB, and VilD), extensive profiling of both central primary met...

    journal_title:Journal of experimental botany

    pub_type: 杂志文章

    doi:10.1093/jxb/erp086

    authors: Zanor MI,Rambla JL,Chaïb J,Steppa A,Medina A,Granell A,Fernie AR,Causse M

    更新日期:2009-01-01 00:00:00

  • Changes in fatty acid composition during development of tissues of coconut (Cocos nucifera L.) embryos in the intact nut and in vitro.

    abstract::Intact coconuts were germinated in situ and compared with excised zygotic embryos germinated in vitro. The growth of the embryonic tissue and their fatty acid compositions were measured. Haustoria, plumules and radicles of coconuts germinated in situ grew continuously and proportionately throughout the 120 d experimen...

    journal_title:Journal of experimental botany

    pub_type: 杂志文章

    doi:10.1093/jexbot/52.358.933

    authors: López-Villalobos A,Dodds PF,Hornung R

    更新日期:2001-05-01 00:00:00

  • Activation of cell proliferation by brassinolide application in tobacco BY-2 cells: effects of brassinolide on cell multiplication, cell-cycle-related gene expression, and organellar DNA contents.

    abstract::Brassinosteroids (BRs) are steroidal phytohormones that are essential for many processes in plant growth and development, such as cell expansion, vascular differentiation, and responses to stress. The effects of BRs on cell division are unclear, as attested by contradictory published results. To determine the effect o...

    journal_title:Journal of experimental botany

    pub_type: 杂志文章

    doi:10.1093/jxb/erg312

    authors: Miyazawa Y,Nakajima N,Abe T,Sakai A,Fujioka S,Kawano S,Kuroiwa T,Yoshida S

    更新日期:2003-12-01 00:00:00

  • Sugars and flowering in the grapevine (Vitis vinifera L.).

    abstract::Sugars play an important role in grapevine flowering. This complex process from inflorescence initiation to fruit maturity takes two growing seasons. Currently, most of the available data concern the involvement of sugars as energy sources during the formation of reproductive structures from initiation of inflorescenc...

    journal_title:Journal of experimental botany

    pub_type: 杂志文章,评审

    doi:10.1093/jxb/ern135

    authors: Lebon G,Wojnarowiez G,Holzapfel B,Fontaine F,Vaillant-Gaveau N,Clément C

    更新日期:2008-01-01 00:00:00

  • GeneChip profiling of transcriptional responses to soybean cyst nematode, Heterodera glycines, colonization of soybean roots.

    abstract::Soybean cyst nematode (SCN) is currently the most devastating pathogen of soybean. SCN penetrates the root and migrates toward the central vascular bundle where it establishes a complex multinucleated feeding structure that provides plant-derived nutrients to support the development and growth of the nematode. To iden...

    journal_title:Journal of experimental botany

    pub_type: 杂志文章

    doi:10.1093/jxb/erm211

    authors: Puthoff DP,Ehrenfried ML,Vinyard BT,Tucker ML

    更新日期:2007-01-01 00:00:00

  • Isolation of Arabidopsis ahg11, a weak ABA hypersensitive mutant defective in nad4 RNA editing.

    abstract::The phytohormone abscisic acid (ABA) plays pivotal roles in the regulation of developmental and environmental responses in plants. Identification of cytoplasmic ABA receptors enabled the elucidation of the main ABA signalling pathway, connecting ABA perception to either nuclear events or the action of several transpor...

    journal_title:Journal of experimental botany

    pub_type: 杂志文章

    doi:10.1093/jxb/ers188

    authors: Murayama M,Hayashi S,Nishimura N,Ishide M,Kobayashi K,Yagi Y,Asami T,Nakamura T,Shinozaki K,Hirayama T

    更新日期:2012-09-01 00:00:00

  • Transcriptional reprogramming and enhanced photosynthesis drive inducible salt tolerance in sugarcane mutant line M4209.

    abstract::Sugarcane (Saccharum officinarum) is a globally cultivated cash crop whose yield is negatively affected by soil salinity. In this study, we investigated the molecular basis of inducible salt tolerance in M4209, a sugarcane mutant line generated through radiation-induced mutagenesis. Under salt-contaminated field condi...

    journal_title:Journal of experimental botany

    pub_type: 杂志文章

    doi:10.1093/jxb/eraa339

    authors: Negi P,Pandey M,Dorn KM,Nikam AA,Devarumath RM,Srivastava AK,Suprasanna P

    更新日期:2020-10-07 00:00:00

  • Perspectives for a better understanding of the metabolic integration of photorespiration within a complex plant primary metabolism network.

    abstract::Photorespiration is an essential high flux metabolic pathway that is found in all oxygen-producing photosynthetic organisms. It is often viewed as a closed metabolic repair pathway that serves to detoxify 2-phosphoglycolic acid and to recycle carbon to fuel the Calvin-Benson cycle. However, this view is too simplistic...

    journal_title:Journal of experimental botany

    pub_type: 杂志文章,评审

    doi:10.1093/jxb/erw145

    authors: Hodges M,Dellero Y,Keech O,Betti M,Raghavendra AS,Sage R,Zhu XG,Allen DK,Weber AP

    更新日期:2016-05-01 00:00:00

  • Antagonistic peptide technology for functional dissection of CLE peptides revisited.

    abstract::In the Arabidopsis thaliana genome, over 1000 putative genes encoding small, presumably secreted, signalling peptides can be recognized. However, a major obstacle in identifying the function of genes encoding small signalling peptides is the limited number of available loss-of-function mutants. To overcome this, a pro...

    journal_title:Journal of experimental botany

    pub_type: 杂志文章

    doi:10.1093/jxb/erv284

    authors: Czyzewicz N,Wildhagen M,Cattaneo P,Stahl Y,Pinto KG,Aalen RB,Butenko MA,Simon R,Hardtke CS,De Smet I

    更新日期:2015-08-01 00:00:00

  • Light and an exogenous transcription factor qualitatively and quantitatively affect the biosynthetic pathway of condensed tannins in Lotus corniculatus leaves.

    abstract::The effects of increasing light and of a heterologous bHLH transcription factor on the accumulation of condensed tannins (CT) were investigated in leaves of Lotus corniculatus, a model legume species which accumulates these secondary metabolites in leaves as well as reproductive tissues. Light and expression of the tr...

    journal_title:Journal of experimental botany

    pub_type: 杂志文章

    doi:10.1093/jxb/eri101

    authors: Paolocci F,Bovone T,Tosti N,Arcioni S,Damiani F

    更新日期:2005-04-01 00:00:00

  • Synthetic biology approaches for improving photosynthesis.

    abstract::The phenomenal increase in agricultural yields that we have witnessed in the last century has slowed down as we approach the limits of selective breeding and optimization of cultivation techniques. To support the yield increase required to feed an ever-growing population, we will have to identify new ways to boost the...

    journal_title:Journal of experimental botany

    pub_type: 杂志文章,评审

    doi:10.1093/jxb/erz029

    authors: Kubis A,Bar-Even A

    更新日期:2019-03-11 00:00:00

  • Endomembrane architecture and dynamics during secretion of the extracellular matrix of the unicellular charophyte, Penium margaritaceum.

    abstract::The extracellular matrix (ECM) of many charophytes, the assemblage of green algae that are the sister group to land plants, is complex, produced in large amounts, and has multiple essential functions. An extensive secretory apparatus and endomembrane system are presumably needed to synthesize and secrete the ECM, but ...

    journal_title:Journal of experimental botany

    pub_type: 杂志文章

    doi:10.1093/jxb/eraa039

    authors: Domozych DS,Sun L,Palacio-Lopez K,Reed R,Jeon S,Li M,Jiao C,Sørensen I,Fei Z,Rose JKC

    更新日期:2020-06-11 00:00:00

  • Genome-wide changes in microRNA expression during short and prolonged heat stress and recovery in contrasting rice cultivars.

    abstract::MicroRNAs (miRNAs) are known to regulate expression of genes under stress. We report here the deep sequencing of small RNAs expressed during control, short and prolonged heat stress and recovery. Genome-wide identification of miRNAs in tolerant (Nagina 22) and susceptible (Vandana) rice cultivars was performed in 16 s...

    journal_title:Journal of experimental botany

    pub_type: 杂志文章

    doi:10.1093/jxb/erx111

    authors: Mangrauthia SK,Bhogireddy S,Agarwal S,Prasanth VV,Voleti SR,Neelamraju S,Subrahmanyam D

    更新日期:2017-04-01 00:00:00