Ecomethodology for organoosmotrophs: Prokaryotic unicellular versus eukaryotic mycelial.

Abstract:

:Although they are very unlikely to play large direct roles in water-column microbial loops, eukaryotic mycelial decomposers (the mycelial true fungi, eumycotes, and zoosporic "fungi," oomycotes) have the potential to be important secondary producers in decaying plant material in shallow aquatic systems. Their secondary productivity may lead to important exchanges of material with microbial loops: output of ascospores, conidia, zoosporic flagellates, leaked lysates, and particles of decayed plants containing mycelium; input of dissolved organics and inorganic nutrients. Development of methods for ecological study of the aquatic mycelial eukaryotic decomposers has not advanced as rapidly as that for the prokaryotes of microbial loops, probably because (1) there are fewer aquatic microbial ecologists with mycological training and inclination than with prokaryotic leanings; and (2) the mycelial decomposers are difficult to work with, because they produce their mycelial mass virtually entirely within opaque solid substrates. Direct microscopic methods have emerged as prime tools for the measurement of prokaryotic mass, whereas an index-chemical assay (ergosterol) is currently the most efficient way to measure the mass of eumycotes. For measuring productivity of prokaryotes of microbial loops, microbial ecologists may choose from several (>10) published and field-tested methods, involving direct microscopy or monitoring of radiotracers. Extensive reviews of distribution and dynamics of aquatic bacterial mass and productivity have appeared. For measuring productivity of eukaryotic mycelial decomposers, one has only two published methods from which to choose, a direct-microscopic and a radiotracer method, neither of which has had adequate field testing. We are, furthermore, much less well equipped to obtain mass and productivity information for the poorly known mycelial oomycotes than we are for the eumycotes. Application of productivity techniques and nucleic-acid technology, may within the next decade allow knowledge of ecology of aquatic eukaryotic mycelial decomposers to advance to levels approaching that for the prokaryotes of microbial loops.

journal_name

Microb Ecol

journal_title

Microbial ecology

authors

Newell SY

doi

10.1007/BF00166803

subject

Has Abstract

pub_date

1994-09-01 00:00:00

pages

151-7

issue

2

eissn

0095-3628

issn

1432-184X

journal_volume

28

pub_type

杂志文章
  • Francisella novicida forms in vitro biofilms mediated by an orphan response regulator.

    abstract::Francisella tularensis is associated with water and waterways and infects many species of animals, insects, and protists. The mechanism Francisella utilizes to persist in the environment and in tick vectors is currently unknown. We have demonstrated for the first time that Francisella novicida, a model organism of F. ...

    journal_title:Microbial ecology

    pub_type: 杂志文章

    doi:10.1007/s00248-009-9586-9

    authors: Durham-Colleran MW,Verhoeven AB,van Hoek ML

    更新日期:2010-04-01 00:00:00

  • Simultaneous consumption of bacteria and dissolved organic matter byTetrahymena pyriformis.

    abstract::The addition of ciliated protozoa to aquatic microcosms and bench-scale sewage treatment plants increases decomposition rates. This is surprising, inasmuch as protozoa consume bacteria, which are the primary decomposers. One possible mechanism of the increase in decomposition rate is the direct consumption of dissolve...

    journal_title:Microbial ecology

    pub_type: 杂志文章

    doi:10.1007/BF02011712

    authors: Glaser D

    更新日期:1988-03-01 00:00:00

  • Comparable Ecological Processes Govern the Temporal Succession of Gut Bacteria and Microeukaryotes as Shrimp Aged.

    abstract::Understanding the rules that govern the successions of gut microbiota is prerequisite for testing general ecological theories and sustaining a desirable microbiota. However, the ignorance of microeukaryotes raises the question of whether gut microeukaryotes are assembled according to the same rules as bacteria. We tra...

    journal_title:Microbial ecology

    pub_type: 杂志文章

    doi:10.1007/s00248-020-01533-6

    authors: Xiong J,Li X,Yan M,Lu J,Qiu Q,Chen J

    更新日期:2020-11-01 00:00:00

  • Arbuscular mycorrhizal symbiosis changes the colonization pattern of Acacia tortilis spp. Raddiana rhizosphere by two strains of rhizobia.

    abstract::The aim of the study was to assess the effect of the mycorrhizosphere of A. tortillis spp. raddiana mycorrhized with Glomus intraradices on the root nodulation by Sinorhizobium terangae (ORS 1009) and/or Mesorhizobium plurifarium (ORS 1096) in two different culture substrates (sandy soil and sand). The endomycorrhizal...

    journal_title:Microbial ecology

    pub_type: 杂志文章

    doi:10.1007/s00248-002-1022-3

    authors: André S,Neyra M,Duponnois R

    更新日期:2003-02-01 00:00:00

  • The biogeography of ammonia-oxidizing bacterial communities in soil.

    abstract::Although ammonia-oxidizing bacteria (AOB) are likely to play a key role in the soil nitrogen cycle, we have only a limited understanding of how the diversity and composition of soil AOB communities change across ecosystem types. We examined 23 soils collected from across North America and used sequence-based analyses ...

    journal_title:Microbial ecology

    pub_type: 杂志文章

    doi:10.1007/s00248-009-9517-9

    authors: Fierer N,Carney KM,Horner-Devine MC,Megonigal JP

    更新日期:2009-08-01 00:00:00

  • The Bacterial Community of the Foliose Macro-lichen Peltigera frigida Is More than a Mere Extension of the Microbiota of the Subjacent Substrate.

    abstract::Lichens host highly diverse microbial communities, with bacteria being one of the most explored groups in terms of their diversity and functioning. These bacteria could partly originate from symbiotic propagules developed by many lichens and, perhaps more commonly and depending on environmental conditions, from differ...

    journal_title:Microbial ecology

    pub_type: 杂志文章

    doi:10.1007/s00248-020-01662-y

    authors: Leiva D,Fernández-Mendoza F,Acevedo J,Carú M,Grube M,Orlando J

    更新日期:2021-01-06 00:00:00

  • Microbial Community Composition and Extracellular Enzyme Activities Associated with Juncus roemerianus and Spartina alterniflora Vegetated Sediments in Louisiana Saltmarshes.

    abstract::Saltmarshes are typically dominated by perennial grasses with large underground rhizome systems that can change local sediment conditions and be important in shaping the sediment microbial community. Factors such as salinity that control plant zonation in saltmarshes are also likely to influence the microbial communit...

    journal_title:Microbial ecology

    pub_type: 杂志文章

    doi:10.1007/s00248-015-0651-2

    authors: Rietl AJ,Overlander ME,Nyman AJ,Jackson CR

    更新日期:2016-02-01 00:00:00

  • Global Networks of Symbiodinium-Bacteria Within the Coral Holobiont.

    abstract::Scleractinian corals form the framework of coral reefs and host abundant and diverse microbial communities that are fundamental to their success. A very limited number of studies have examined the co-occurrence of multiple partners within the coral 'holobiont' and their pattern of specificity over different geographic...

    journal_title:Microbial ecology

    pub_type: 杂志文章

    doi:10.1007/s00248-018-1255-4

    authors: Bernasconi R,Stat M,Koenders A,Huggett MJ

    更新日期:2019-04-01 00:00:00

  • Migration of Paraburkholderia terrae BS001 Along Old Fungal Hyphae in Soil at Various pH Levels.

    abstract::The movement of bacterial cells along with fungal hyphae in soil (the mycosphere) has been reported in several previous studies. However, how local soil conditions affect bacterial migration direction in the mycosphere has not been extensively studied. Here, we investigated the influence of two soil parameters, pH and...

    journal_title:Microbial ecology

    pub_type: 杂志文章

    doi:10.1007/s00248-017-1137-1

    authors: Yang P,Oliveira da Rocha Calixto R,van Elsas JD

    更新日期:2018-08-01 00:00:00

  • Geographical Patterns of nirS Gene Abundance and nirS-Type Denitrifying Bacterial Community Associated with Activated Sludge from Different Wastewater Treatment Plants.

    abstract::Denitrifying bacteria is a driver of nitrogen removal process in wastewater treatment ecosystem. However, the geographical characteristics of denitrifying bacterial communities associated with activated sludge from diverse wastewater treatment plants (WWTPs) are still unclear. Here, quantitative PCR and next-generatio...

    journal_title:Microbial ecology

    pub_type: 杂志文章

    doi:10.1007/s00248-018-1236-7

    authors: Zhang H,Feng J,Chen S,Zhao Z,Li B,Wang Y,Jia J,Li S,Wang Y,Yan M,Lu K,Hao H

    更新日期:2019-02-01 00:00:00

  • Thymidine and leucine incorporation in soil bacteria with different cell size.

    abstract::Thymidine and leucine incorporation into macromolecules of soil bacteria extracted by homogenization-centrifugation were measured after size-fractionation of the bacterial suspension through different sized filters (1.0, 0.8, 0.6, 0.4 μm). The specific thymidine incorporation rate was highest for the unfiltered and 1....

    journal_title:Microbial ecology

    pub_type: 杂志文章

    doi:10.1007/BF00182410

    authors: Bååth E

    更新日期:1994-05-01 00:00:00

  • Biotic disturbance, recolonization, and early succession of bacterial assemblages in intertidal sediments.

    abstract::The role of disturbance in structuring natural microbial communities has been largely unexplored. Disturbance associated with invertebrate ingestion can reduce bacterial biomass and alter metabolic activities and compositions of bacterial assemblages in marine sediments. The primary objectives of the research presente...

    journal_title:Microbial ecology

    pub_type: 杂志文章

    doi:10.1007/s00248-003-1031-x

    authors: Plante CJ,Wilde SB

    更新日期:2004-08-01 00:00:00

  • Effects of temperature and salinity on survival of toxigenicVibrio cholerae O1 in seawater.

    abstract::In 1991 and 1992, the Latin American epidemic strain of Vibrio cholerae O1 was isolated from ballast water, bilge water, and sewage taken from cargo ships docked in Mobile Bay, Alabama. The findings raised questions regarding the organism's ability to survive long-term aboard ships and to withstand the exchange of bal...

    journal_title:Microbial ecology

    pub_type: 杂志文章

    doi:10.1007/BF00167862

    authors: McCarthy SA

    更新日期:1996-03-01 00:00:00

  • Unveiling the Metabolic Pathways Associated with the Adaptive Reduction of Cell Size During Vibrio harveyi Persistence in Seawater Microcosms.

    abstract::Owing to their ubiquitous presence and ability to act as primary or opportunistic pathogens, Vibrio species greatly contribute to the diversity and evolution of marine ecosystems. This study was aimed at unveiling the cellular strategies enabling the marine gammaproteobacterium Vibrio harveyi to adapt and persist in n...

    journal_title:Microbial ecology

    pub_type: 杂志文章

    doi:10.1007/s00248-015-0614-7

    authors: Kaberdin VR,Montánchez I,Parada C,Orruño M,Arana I,Barcina I

    更新日期:2015-10-01 00:00:00

  • Temperature effects on steady-state growth, phosphorus uptake, and the chemical composition of a marine phytoplankter.

    abstract::The marine chrysophyteMonochrysis lutheri was grown in phosphorus-limited continuous cultures at temperatures of 15°, 18.8° and 23°C. The effect of temperature on the maximum growth rate was well-defined by the Arrhenius equation, but the Q10 for this alga (1.7) was somewhat lower than has been determined previously f...

    journal_title:Microbial ecology

    pub_type: 杂志文章

    doi:10.1007/BF02013523

    authors: Goldman JC

    更新日期:1979-09-01 00:00:00

  • Relationship of atmospheric pollution characterized by gas (NO2) and particles (PM10) to microbial communities living in bryophytes at three differently polluted sites (rural, urban, and industrial).

    abstract::Atmospheric pollution has become a major problem for modern societies owing to its fatal effects on both human health and ecosystems. We studied the relationships of nitrogen dioxide atmospheric pollution and metal trace elements contained in atmospheric particles which were accumulated in bryophytes to microbial comm...

    journal_title:Microbial ecology

    pub_type: 杂志文章

    doi:10.1007/s00248-009-9580-2

    authors: Meyer C,Gilbert D,Gaudry A,Franchi M,Nguyen HV,Fabure J,Bernard N

    更新日期:2010-02-01 00:00:00

  • Comparative geochemical and microbiological characterization of two thermal pools in the Uzon Caldera, Kamchatka, Russia.

    abstract::Arkashin Schurf (Arkashin) and Zavarzin Spring (Zavarzin), two active thermal pools in the Uzon Caldera, Kamchatka, Russia, were studied for geochemical and microbiological characterization. Arkashin, the smaller of the two pools, had broader temperature and pH ranges, and the sediments had higher concentrations of to...

    journal_title:Microbial ecology

    pub_type: 杂志文章

    doi:10.1007/s00248-011-9979-4

    authors: Burgess EA,Unrine JM,Mills GL,Romanek CS,Wiegel J

    更新日期:2012-04-01 00:00:00

  • Complexation, Stabilization, and UV Photolysis of Extracellular and Surface-Bound Glucosidase and Alkaline Phosphatase: Implications for Biofilm Microbiota.

    abstract::Biofilm-produced and commercially-purified a- and b-glucosidase and alkaline phosphatase were subjected to different spectral portions of natural and artificial light and exposed to various humic substances to elucidate their impact on enzyme activities. Photochemical degradation of all enzymes occurred under differen...

    journal_title:Microbial ecology

    pub_type: 杂志文章

    doi:10.1007/s00248-001-1023-7

    authors: Espeland EM,Wetzel RG

    更新日期:2001-12-01 00:00:00

  • Genomic taxonomy of the genus prochlorococcus.

    abstract::The genus Prochlorococcus is globally abundant and dominates the total phytoplankton biomass and production in the oligotrophic ocean. The single species, Prochlorococcus marinus, comprises six named ecotypes. Our aim was to analyze the taxonomic structure of the genus Prochlorococcus. We analyzed the complete genomes...

    journal_title:Microbial ecology

    pub_type: 杂志文章

    doi:10.1007/s00248-013-0270-8

    authors: Thompson CC,Silva GG,Vieira NM,Edwards R,Vicente AC,Thompson FL

    更新日期:2013-11-01 00:00:00

  • Assessing gut microbial diversity from feces and rectal mucosa.

    abstract::Gut microbiota is the most complex bacterial community in the human body and its study may give important clues to the etiology of different intestinal diseases. Most studies carried out so far have used fecal samples, assuming that these samples have a similar distribution to the communities present throughout the co...

    journal_title:Microbial ecology

    pub_type: 杂志文章

    doi:10.1007/s00248-010-9738-y

    authors: Durbán A,Abellán JJ,Jiménez-Hernández N,Ponce M,Ponce J,Sala T,D'Auria G,Latorre A,Moya A

    更新日期:2011-01-01 00:00:00

  • The Microbiome of Eucalyptus Roots under Different Management Conditions and Its Potential for Biological Nitrogen Fixation.

    abstract::Eucalyptus plantations offer a cost-effective and renewable source of raw material. There is substantial interest in improving forestry production, especially through sustainable strategies such as the use of plant growth-promoting bacteria. However, little is known about Eucalyptus microbiology. In this study, the en...

    journal_title:Microbial ecology

    pub_type: 杂志文章

    doi:10.1007/s00248-017-1014-y

    authors: Fonseca EDS,Peixoto RS,Rosado AS,Balieiro FC,Tiedje JM,Rachid CTCDC

    更新日期:2018-01-01 00:00:00

  • Haloarchaea from the Andean Puna: Biological Role in the Energy Metabolism of Arsenic.

    abstract::Biofilms, microbial mats, and microbialites dwell under highly limiting conditions (high salinity, extreme aridity, pH, and elevated arsenic concentration) in the Andean Puna. Only recent pioneering studies have described the microbial diversity of different Altiplano lakes and revealed their unexpectedly diverse micr...

    journal_title:Microbial ecology

    pub_type: 杂志文章

    doi:10.1007/s00248-018-1159-3

    authors: Ordoñez OF,Rasuk MC,Soria MN,Contreras M,Farías ME

    更新日期:2018-10-01 00:00:00

  • Resilience of Fungal Communities to Elevated CO2.

    abstract::Soil filamentous fungi play a prominent role in regulating ecosystem functioning in terrestrial ecosystems. This necessitates understanding their responses to climate change drivers in order to predict how nutrient cycling and ecosystem services will be influenced in the future. Here, we provide a quantitative synthes...

    journal_title:Microbial ecology

    pub_type: 杂志文章,meta分析

    doi:10.1007/s00248-016-0795-8

    authors: Veresoglou SD,Anderson IC,de Sousa NM,Hempel S,Rillig MC

    更新日期:2016-08-01 00:00:00

  • Feeding Honeybee Colonies with Honeybee-Specific Lactic Acid Bacteria (Hbs-LAB) Does Not Affect Colony-Level Hbs-LAB Composition or Paenibacillus larvae Spore Levels, Although American Foulbrood Affected Colonies Harbor a More Diverse Hbs-LAB Community.

    abstract::The main current methods for controlling American Foulbrood (AFB) in honeybees, caused by the bacterial pathogen Paenibacillus larvae, are enforced incineration or prophylactic antibiotic treatment, neither of which is fully satisfactory. This has led to an increased interest in the natural relationships between the p...

    journal_title:Microbial ecology

    pub_type: 杂志文章

    doi:10.1007/s00248-019-01434-3

    authors: Lamei S,Stephan JG,Nilson B,Sieuwerts S,Riesbeck K,de Miranda JR,Forsgren E

    更新日期:2020-04-01 00:00:00

  • Microhabitats and chemical microenvironments under saxicolous lichens growing on granite.

    abstract::Lasallia hispanica, Parmelia omphalodes, and Cornicularia normoerica, saxicolous thalli growing on granite, show a close relationship with other lichens and microorganisms living in the lithic substrate beneath them. The lithobiontic community is an accumulation of microorganisms at an interface forming a biofilm, whi...

    journal_title:Microbial ecology

    pub_type: 杂志文章

    doi:10.1007/s00248-001-1028-2

    authors: de los Ríos A,Wierzchos J,Ascaso C

    更新日期:2002-01-01 00:00:00

  • The ecology of the yeast flora in necroticOpuntia cacti and of associatedDrosophila in Australia.

    abstract::A survey was made of the yeast communities isolated from necrotic tissue of 4 species of prickly-pear cacti (Opuntia stricta, O. tomentosa, O. monacantha, andO. streptacantha) which have colonized in Australia. Yeast communities were sampled from a number of localities and at different times. Cactus specific yeasts ac...

    journal_title:Microbial ecology

    pub_type: 杂志文章

    doi:10.1007/BF02015562

    authors: Barker JS,East PD,Phaff HJ,Miranda M

    更新日期:1984-12-01 00:00:00

  • Variations in Bacterial Community in a Temperate Lake Associated with an Agricultural Watershed.

    abstract::Terrestrially derived carbon and nutrients are washed into lakes, providing nutritional drivers for both microbial heterotrophy and phototrophy. Changes in the quantity and diversity of carbon and nutrients exported from watersheds in response to alterations in long-term land use have led to a need for evaluation of t...

    journal_title:Microbial ecology

    pub_type: 杂志文章

    doi:10.1007/s00248-016-0783-z

    authors: Song L,Li L

    更新日期:2016-08-01 00:00:00

  • Bacterial community diversity in undisturbed perhumid montane forest soils in Taiwan.

    abstract::The diversity and composition of soil bacterial communities in three topographic sites (summit, foot slope, and lakeshore) from subtropical montane forest ecosystem in Taiwan were examined by using 16S rRNA gene clone library analysis. This locality is temperate, perhumid, and has low soil acidity (pH < 4), which is a...

    journal_title:Microbial ecology

    pub_type: 杂志文章

    doi:10.1007/s00248-009-9574-0

    authors: Lin YT,Huang YJ,Tang SL,Whitman WB,Coleman DC,Chiu CY

    更新日期:2010-02-01 00:00:00

  • Response of benthic protozoa and thraustochytrid protists to fish farm impact in seagrass (Posidonia oceanica) and soft-bottom sediments.

    abstract::We investigated the impact of fish farm biodeposition on benthic bacteria, thraustochytrid protists, and heterotrophic protozoa (nanoflagellates and ciliates) in an oligotrophic area of the Mediterranean Sea. The fish farm impact was investigated both on a seagrass (Posidonia oceanica) bed and on soft bottom sediments...

    journal_title:Microbial ecology

    pub_type: 杂志文章

    doi:10.1007/s00248-004-0117-4

    authors: Bongiorni L,Mirto S,Pusceddu A,Danovaro R

    更新日期:2005-08-01 00:00:00

  • Epizoic communities of prokaryotes on healthy and diseased scleractinian corals in Lingayen Gulf, Philippines.

    abstract::In search for microbiological indicators of coral health and coral diseases, community profiles of coral-associated epizoic prokaryotes were investigated because of their dual potential as a source of coral pathogens and their antagonists. In pairwise samples of visually healthy and diseased coral specimens from Bolin...

    journal_title:Microbial ecology

    pub_type: 杂志文章

    doi:10.1007/s00248-008-9400-0

    authors: Arboleda M,Reichardt W

    更新日期:2009-01-01 00:00:00