Synthesis of [(18)F]SiFB: a prosthetic group for direct protein radiolabeling for application in positron emission tomography.

Abstract:

:N-Succinimidyl 3-(di-tert-butyl[(18)F]fluorosilyl)benzoate ([(18)F]SiFB) is a highly reactive prosthetic group for radiolabeling of proteins for use in positron emission tomography (PET). It is similar to N-succinimidyl-4-[(18)F]fluorobenzoate ([(18)F]SFB), the 'gold-standard' prosthetic group for protein (18)F-labeling, but can be synthesized using a much shorter and technically easier procedure. A recently reported simple procedure to obtain anhydrous (18)F- by avoiding time-consuming azeotropic drying is applied with a slight modification to prevent basic hydrolysis of the active N-hydroxysuccinimide (NHS) ester moiety of [(18)F]SiFB. The labeling of [(18)F]SiFB is performed by a fast (18)F-(19)F isotopic exchange (IE) reaction at room temperature (20-25 °C) within 30 min. [(18)F]SiFB is purified using a C18 cartridge instead of HPLC, further decreasing the overall time required for protein labeling. High specific activities > 18.5 GBq μmol(-1) (> 500 Ci mmol(-1)) can be obtained. Finally, incubation of [(18)F]SiFB with the desired protein in an aqueous solution at pH 9, followed by HPLC purification, provides the final solution of the labeled protein ready for in vivo applications.

journal_name

Nat Protoc

journal_title

Nature protocols

authors

Kostikov AP,Chin J,Orchowski K,Schirrmacher E,Niedermoser S,Jurkschat K,Iovkova-Berends L,Wängler C,Wängler B,Schirrmacher R

doi

10.1038/nprot.2012.110

subject

Has Abstract

pub_date

2012-11-01 00:00:00

pages

1956-63

issue

11

eissn

1754-2189

issn

1750-2799

pii

nprot.2012.110

journal_volume

7

pub_type

杂志文章
  • Generation of a transgenic ORFeome library in Drosophila.

    abstract::Overexpression screens can be used to explore gene function in Drosophila melanogaster, but to demonstrate their full potential, comprehensive and systematic collections of fly strains are required. Here we provide a protocol for high-throughput cloning of Drosophila open-reading frames (ORFs) that are regulated by up...

    journal_title:Nature protocols

    pub_type: 杂志文章

    doi:10.1038/nprot.2014.105

    authors: Bischof J,Sheils EM,Björklund M,Basler K

    更新日期:2014-07-01 00:00:00

  • Use of luminescent bacteria for rapid screening and characterization of short cationic antimicrobial peptides synthesized on cellulose using peptide array technology.

    abstract::The increasing multi-resistance of pathogenic bacteria requires the development of novel classes of antibiotics. Antimicrobial host defense peptides represent one promising class. Here we describe a protocol for screening large numbers of peptides against any microbe of interest. Peptides synthesized on a cellulose su...

    journal_title:Nature protocols

    pub_type: 杂志文章

    doi:10.1038/nprot.2007.203

    authors: Hilpert K,Hancock RE

    更新日期:2007-01-01 00:00:00

  • Characterizing peptides in individual mammalian cells using mass spectrometry.

    abstract::Cell-to-cell chemical signaling plays multiple roles in coordinating the activity of the functional elements of an organism, with these elements ranging from a three-neuron reflex circuit to the entire animal. In recent years, single-cell mass spectrometry (MS) has enabled the discovery of cell-to-cell signaling molec...

    journal_title:Nature protocols

    pub_type: 杂志文章

    doi:10.1038/nprot.2007.277

    authors: Rubakhin SS,Sweedler JV

    更新日期:2007-01-01 00:00:00

  • Integrated analysis of shotgun proteomic data with PatternLab for proteomics 4.0.

    abstract::PatternLab for proteomics is an integrated computational environment that unifies several previously published modules for the analysis of shotgun proteomic data. The contained modules allow for formatting of sequence databases, peptide spectrum matching, statistical filtering and data organization, extracting quantit...

    journal_title:Nature protocols

    pub_type: 杂志文章

    doi:10.1038/nprot.2015.133

    authors: Carvalho PC,Lima DB,Leprevost FV,Santos MD,Fischer JS,Aquino PF,Moresco JJ,Yates JR 3rd,Barbosa VC

    更新日期:2016-01-01 00:00:00

  • High spatial resolution imaging of biological tissues using nanospray desorption electrospray ionization mass spectrometry.

    abstract::Mass spectrometry imaging (MSI) enables label-free spatial mapping of hundreds of biomolecules in tissue sections. This capability provides valuable information on tissue heterogeneity that is difficult to obtain using population-averaged assays. Despite substantial developments in both instrumentation and methodology...

    journal_title:Nature protocols

    pub_type: 杂志文章

    doi:10.1038/s41596-019-0237-4

    authors: Yin R,Burnum-Johnson KE,Sun X,Dey SK,Laskin J

    更新日期:2019-12-01 00:00:00

  • Fabrication of nanopores with ultrashort single-walled carbon nanotubes inserted in a lipid bilayer.

    abstract::We describe a protocol for the insertion of ultrashort single-walled carbon nanotubes (SWCNTs) to form nanopores in a Montal-Mueller lipid bilayer. The SWCNTs are designed to bind to a specific analyte of interest; binding will result in the reduction of current in single-channel recording experiments. The first stage...

    journal_title:Nature protocols

    pub_type: 杂志文章

    doi:10.1038/nprot.2015.112

    authors: Liu L,Xie J,Li T,Wu HC

    更新日期:2015-11-01 00:00:00

  • Flow cytometry and FISH to measure the average length of telomeres (flow FISH).

    abstract::Telomeres have emerged as crucial cellular elements in aging and various diseases including cancer. To measure the average length of telomere repeats in cells, we describe our protocols that use fluorescent in situ hybridization (FISH) with labeled peptide nucleic acid (PNA) probes specific for telomere repeats in com...

    journal_title:Nature protocols

    pub_type: 杂志文章

    doi:10.1038/nprot.2006.263

    authors: Baerlocher GM,Vulto I,de Jong G,Lansdorp PM

    更新日期:2006-01-01 00:00:00

  • Selective chemoprecipitation to enrich nitropeptides from complex proteomes for mass-spectrometric analysis.

    abstract::Post-translational protein nitration has attracted interest owing to its involvement in cellular signaling, effects on protein function and potential as biomarker of nitroxidative stress. We describe a procedure for enriching nitropeptides for mass spectrometry (MS)-based proteomics that is a simple and reliable alter...

    journal_title:Nature protocols

    pub_type: 杂志文章

    doi:10.1038/nprot.2014.052

    authors: Prokai L,Guo J,Prokai-Tatrai K

    更新日期:2014-04-01 00:00:00

  • Mapping in vivo target interaction profiles of covalent inhibitors using chemical proteomics with label-free quantification.

    abstract::Activity-based protein profiling (ABPP) has emerged as a valuable chemical proteomics method to guide the therapeutic development of covalent drugs by assessing their on-target engagement and off-target activity. We recently used ABPP to determine the serine hydrolase interaction landscape of the experimental drug BIA...

    journal_title:Nature protocols

    pub_type: 杂志文章

    doi:10.1038/nprot.2017.159

    authors: van Rooden EJ,Florea BI,Deng H,Baggelaar MP,van Esbroeck ACM,Zhou J,Overkleeft HS,van der Stelt M

    更新日期:2018-04-01 00:00:00

  • 5' end-centered expression profiling using cap-analysis gene expression and next-generation sequencing.

    abstract::Cap-analysis gene expression (CAGE) provides accurate high-throughput measurement of RNA expression. CAGE allows mapping of all the initiation sites of both capped coding and noncoding RNAs. In addition, transcriptional start sites within promoters are characterized at single-nucleotide resolution. The latter allows t...

    journal_title:Nature protocols

    pub_type: 杂志文章

    doi:10.1038/nprot.2012.005

    authors: Takahashi H,Lassmann T,Murata M,Carninci P

    更新日期:2012-02-23 00:00:00

  • Production and characterization of adeno-associated viral vectors.

    abstract::The adeno-associated virus (AAV) is one of the most promising viral vectors for human gene therapy. As with any potential therapeutic system, a thorough understanding of it at the in vitro and in vivo levels is required. Over the years, numerous methods have been developed to better characterize AAV vectors. These met...

    journal_title:Nature protocols

    pub_type: 杂志文章

    doi:10.1038/nprot.2006.207

    authors: Grieger JC,Choi VW,Samulski RJ

    更新日期:2006-01-01 00:00:00

  • Synthesis of oligo-RNAs with photocaged adenosine 2'-hydroxyls.

    abstract::This protocol describes a general method for the preparation of RNAs in which the reactivity or hydrogen-bonding properties of the molecule are modified in a photoreversible fashion by use of a caging strategy. A single caged adenosine, modified at the 2' position as a nitro-benzyl ether, can be incorporated into shor...

    journal_title:Nature protocols

    pub_type: 杂志文章

    doi:10.1038/nprot.2007.154

    authors: Chaulk SG,MacMillan AM

    更新日期:2007-01-01 00:00:00

  • Metabolic labeling of glycans with azido sugars and subsequent glycan-profiling and visualization via Staudinger ligation.

    abstract::Metabolic labeling of glycans with a bioorthogonal chemical reporter such as the azide enables their visualization in cells and organisms as well as the enrichment of specific glycoprotein types for proteomic analysis. This process involves two steps. Azido sugars are fed to cells or organisms and integrated by the gl...

    journal_title:Nature protocols

    pub_type: 杂志文章

    doi:10.1038/nprot.2007.422

    authors: Laughlin ST,Bertozzi CR

    更新日期:2007-01-01 00:00:00

  • Nucleotide resolution profiling of m7G tRNA modification by TRAC-Seq.

    abstract::Precise identification of sites of RNA modification is key to studying the functional role of such modifications in the regulation of gene expression and for elucidating relevance to diverse physiological processes. tRNA reduction and cleavage sequencing (TRAC-Seq) is a chemically based approach for the unbiased globa...

    journal_title:Nature protocols

    pub_type: 杂志文章

    doi:10.1038/s41596-019-0226-7

    authors: Lin S,Liu Q,Jiang YZ,Gregory RI

    更新日期:2019-11-01 00:00:00

  • Vibrational spectroscopic image analysis of biological material using multivariate curve resolution-alternating least squares (MCR-ALS).

    abstract::Raman and Fourier transform IR (FTIR) microspectroscopic images of biological material (tissue sections) contain detailed information about their chemical composition. The challenge lies in identifying changes in chemical composition, as well as locating and assigning these changes to different conditions (pathology, ...

    journal_title:Nature protocols

    pub_type: 杂志文章

    doi:10.1038/nprot.2015.008

    authors: Felten J,Hall H,Jaumot J,Tauler R,de Juan A,Gorzsás A

    更新日期:2015-02-01 00:00:00

  • Recombineering: a homologous recombination-based method of genetic engineering.

    abstract::Recombineering is an efficient method of in vivo genetic engineering applicable to chromosomal as well as episomal replicons in Escherichia coli. This method circumvents the need for most standard in vitro cloning techniques. Recombineering allows construction of DNA molecules with precise junctions without constraint...

    journal_title:Nature protocols

    pub_type: 杂志文章

    doi:10.1038/nprot.2008.227

    authors: Sharan SK,Thomason LC,Kuznetsov SG,Court DL

    更新日期:2009-01-01 00:00:00

  • Marker selection for genetic case-control association studies.

    abstract::Association studies can focus on candidate gene(s), a particular genomic region, or adopt a genome-wide association approach, each of which has implications for marker selection. The strategy for marker selection will affect the statistical power of the study to detect a disease association and is a crucial element of...

    journal_title:Nature protocols

    pub_type: 杂志文章

    doi:10.1038/nprot.2009.38

    authors: Pettersson FH,Anderson CA,Clarke GM,Barrett JC,Cardon LR,Morris AP,Zondervan KT

    更新日期:2009-01-01 00:00:00

  • Standardization of complex biologically derived spectrochemical datasets.

    abstract::Spectroscopic techniques such as Fourier-transform infrared (FTIR) spectroscopy are used to study interactions of light with biological materials. This interaction forms the basis of many analytical assays used in disease screening/diagnosis, microbiological studies, and forensic/environmental investigations. Advantag...

    journal_title:Nature protocols

    pub_type: 杂志文章

    doi:10.1038/s41596-019-0150-x

    authors: Morais CLM,Paraskevaidi M,Cui L,Fullwood NJ,Isabelle M,Lima KMG,Martin-Hirsch PL,Sreedhar H,Trevisan J,Walsh MJ,Zhang D,Zhu YG,Martin FL

    更新日期:2019-05-01 00:00:00

  • Tracking recent adaptive evolution in microbial species using TimeZone.

    abstract::An important goal of the analysis of sequenced genomes of microbial pathogens is to improve the therapy of infectious diseases. In this context, a major challenge is to detect genomic-level evolutionary changes that increase microbial virulence. TimeZone, a genome analysis software package, is designed to detect footp...

    journal_title:Nature protocols

    pub_type: 杂志文章

    doi:10.1038/nprot.2013.031

    authors: Chattopadhyay S,Paul S,Dykhuizen DE,Sokurenko EV

    更新日期:2013-04-01 00:00:00

  • In situ hybridization technique for mRNA detection in whole mount Arabidopsis samples.

    abstract::High throughput microarray transcription analyses provide us with the expression profiles for large amounts of plant genes. However, their tissue and cellular resolution is limited. Thus, for detailed functional analysis, it is still necessary to examine the expression pattern of selected candidate genes at a cellular...

    journal_title:Nature protocols

    pub_type: 杂志文章

    doi:10.1038/nprot.2006.333

    authors: Hejátko J,Blilou I,Brewer PB,Friml J,Scheres B,Benková E

    更新日期:2006-01-01 00:00:00

  • In vivo antigen-driven plasmablast enrichment in combination with antigen-specific cell sorting to facilitate the isolation of rare monoclonal antibodies from human B cells.

    abstract::The ability to rapidly generate large panels of antigen-specific human antibodies in a rodent would enable the efficient discovery of novel therapeutically useful antibodies. We have developed a system wherein human antigen-specific antibody-secreting plasmablasts can be enriched in vivo, in a severe combined immunode...

    journal_title:Nature protocols

    pub_type: 杂志文章

    doi:10.1038/nprot.2014.104

    authors: Lin Z,Chiang NY,Chai N,Seshasayee D,Lee WP,Balazs M,Nakamura G,Swem LR

    更新日期:2014-07-01 00:00:00

  • In-gel stable isotope labeling for relative quantification using mass spectrometry.

    abstract::Although differences in protein staining intensity can often be visualized by difference gel electrophoresis, abundant proteins can obscure less abundant proteins, and quantification of post-translational modifications is difficult. We present a protocol for quantifying changes in the abundance of a specific protein o...

    journal_title:Nature protocols

    pub_type: 杂志文章

    doi:10.1038/nprot.2006.7

    authors: Asara JM,Zhang X,Zheng B,Maroney LA,Christofk HR,Wu N,Cantley LC

    更新日期:2006-01-01 00:00:00

  • Determining the polysaccharide composition of plant cell walls.

    abstract::The plant cell wall is a chemically complex structure composed mostly of polysaccharides. Detailed analyses of these cell wall polysaccharides are essential for our understanding of plant development and for our use of plant biomass (largely wall material) in the food, agriculture, fabric, timber, biofuel and biocompo...

    journal_title:Nature protocols

    pub_type: 杂志文章

    doi:10.1038/nprot.2012.081

    authors: Pettolino FA,Walsh C,Fincher GB,Bacic A

    更新日期:2012-09-01 00:00:00

  • The partial reduction of electron-deficient pyrroles: procedures describing both Birch (Li/NH3) and ammonia-free (Li/DBB) conditions.

    abstract::The partial reduction of electron-deficient pyrroles using either Birch (Li/NH(3)) or ammonia-free (Li/di-tert-butyl biphenyl) conditions allows formation of pyrroline compounds in good yield and, when combined with a reductive alkylation or similar approach, leads to highly functionalized, synthetically useful compou...

    journal_title:Nature protocols

    pub_type: 杂志文章

    doi:10.1038/nprot.2007.245

    authors: Donohoe TJ,Thomas RE

    更新日期:2007-01-01 00:00:00

  • Genetically modified mouse models to help fight COVID-19.

    abstract::The research community is in a race to understand the molecular mechanisms of severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) infection, to repurpose currently available antiviral drugs and to develop new therapies and vaccines against coronavirus disease 2019 (COVID-19). One major challenge in achieving ...

    journal_title:Nature protocols

    pub_type: 杂志文章,评审

    doi:10.1038/s41596-020-00403-2

    authors: Gurumurthy CB,Quadros RM,Richardson GP,Poluektova LY,Mansour SL,Ohtsuka M

    更新日期:2020-12-01 00:00:00

  • Holographic two-photon activation for synthetic optogenetics.

    abstract::Optogenetic tools provide users the ability to photocontrol the activity of cells. Commonly, activation is achieved by expression of proteins from photosynthetic organisms, for example, microbial opsins (e.g., ChR2). Alternatively, a sister approach, synthetic optogenetics, enables photocontrol over proteins of mammal...

    journal_title:Nature protocols

    pub_type: 杂志文章

    doi:10.1038/s41596-018-0118-2

    authors: Carmi I,De Battista M,Maddalena L,Carroll EC,Kienzler MA,Berlin S

    更新日期:2019-03-01 00:00:00

  • Template-based protein structure modeling using the RaptorX web server.

    abstract::A key challenge of modern biology is to uncover the functional role of the protein entities that compose cellular proteomes. To this end, the availability of reliable three-dimensional atomic models of proteins is often crucial. This protocol presents a community-wide web-based method using RaptorX (http://raptorx.uch...

    journal_title:Nature protocols

    pub_type: 杂志文章

    doi:10.1038/nprot.2012.085

    authors: Källberg M,Wang H,Wang S,Peng J,Wang Z,Lu H,Xu J

    更新日期:2012-07-19 00:00:00

  • Scototaxis as anxiety-like behavior in fish.

    abstract::The scototaxis (dark/light preference) protocol is a behavioral model for fish that is being validated to assess the antianxiety effects of pharmacological agents and the behavioral effects of toxic substances, and to investigate the (epi)genetic bases of anxiety-related behavior. Briefly, a fish is placed in a centra...

    journal_title:Nature protocols

    pub_type: 杂志文章

    doi:10.1038/nprot.2009.225

    authors: Maximino C,Marques de Brito T,Dias CA,Gouveia A Jr,Morato S

    更新日期:2010-02-01 00:00:00

  • Expander: from expression microarrays to networks and functions.

    abstract::A major challenge in the analysis of gene expression microarray data is to extract meaningful biological knowledge out of the huge volume of raw data. Expander (EXPression ANalyzer and DisplayER) is an integrated software platform for the analysis of gene expression data, which is freely available for academic use. It...

    journal_title:Nature protocols

    pub_type: 杂志文章

    doi:10.1038/nprot.2009.230

    authors: Ulitsky I,Maron-Katz A,Shavit S,Sagir D,Linhart C,Elkon R,Tanay A,Sharan R,Shiloh Y,Shamir R

    更新日期:2010-02-01 00:00:00

  • Derivation and maintenance of human embryonic stem cells from poor-quality in vitro fertilization embryos.

    abstract::Human embryonic stem (hES) cells are self-renewing, pluripotent cells that are valuable research tools and hold promise for use in regenerative medicine. Most hES cell lines are derived from cryopreserved human embryos that were created during in vitro fertilization (IVF) and are in excess of clinical need. Embryos th...

    journal_title:Nature protocols

    pub_type: 杂志文章

    doi:10.1038/nprot.2008.60

    authors: Lerou PH,Yabuuchi A,Huo H,Miller JD,Boyer LF,Schlaeger TM,Daley GQ

    更新日期:2008-01-01 00:00:00