Protein and steroid profiles in follicular fluid after ovarian hyperstimulation as potential biomarkers of IVF outcome.

Abstract:

:Controlled ovarian hyperstimulation is performed to assist with generation of multiple mature oocytes for use in in vitro fertilization (IVF). The goal of our study was to evaluate differences in protein and steroid profiles in ovarian follicular fluid (hFF) samples obtained during oocyte retrieval from women undergoing IVF treatment and to identify physiological pathways associated with the proteins. The hFF samples were depleted of abundant proteins, fractionated by ultrafiltration, digested, and analyzed by nano-LC-QTOF. Concentrations of 15 endogenous steroids were determined in the samples using LC-MS/MS methods. The total number of proteins identified in the samples was 75, of which 4, 7, and 2 were unique to the samples from women with viable pregnancy, miscarriage, and no pregnancy, respectively. Identified proteins were associated with the acute response signaling, coagulation system, intrinsic and extrinsic prothrombin activation, complement system, neuroprotective role of THOP1, FXR/RXR activation, role of tissue factor, and growth hormone pathways. A greater number of proteins associated with biosynthesis was found in hFF samples corresponding to the oocytes resulting in pregnancy. The abundance of seven proteins was found to be associated with steroidogenesis. The obtained data will contribute to better understanding of the pathogenesis and development of noninvasive markers for assessment of oocytes viability.

journal_name

J Proteome Res

authors

Kushnir MM,Naessén T,Wanggren K,Rockwood AL,Crockett DK,Bergquist J

doi

10.1021/pr300535g

subject

Has Abstract

pub_date

2012-10-05 00:00:00

pages

5090-100

issue

10

eissn

1535-3893

issn

1535-3907

journal_volume

11

pub_type

杂志文章
  • Proteome of metastatic canine mammary carcinomas: similarities to and differences from human breast cancer.

    abstract::Mammary tumors are a major health threat to women and female dogs. In both, metastasis of the primary tumor to distant organs is the most common cause of tumor-related death. Nevertheless, the molecular mechanisms of tumor metastasis are far from being understood, and it is still unknown why some human and canine carc...

    journal_title:Journal of proteome research

    pub_type: 杂志文章

    doi:10.1021/pr100671c

    authors: Klopfleisch R,Klose P,Weise C,Bondzio A,Multhaup G,Einspanier R,Gruber AD

    更新日期:2010-12-03 00:00:00

  • Integrative analysis of N-linked human glycoproteomic data sets reveals PTPRF ectodomain as a novel plasma biomarker candidate for prostate cancer.

    abstract::In an attempt to identify prostate cancer biomarkers with greater diagnostic and prognostic capabilities, we have developed an integrative proteomic discovery workflow focused on N-linked glycoproteins that refines the target selection process. In this work, hydrazide-based chemistry was used to identify N-linked glyc...

    journal_title:Journal of proteome research

    pub_type: 杂志文章

    doi:10.1021/pr201200n

    authors: Whitmore TE,Peterson A,Holzman T,Eastham A,Amon L,McIntosh M,Ozinsky A,Nelson PS,Martin DB

    更新日期:2012-05-04 00:00:00

  • Systematic analyses of the transcriptome, translatome, and proteome provide a global view and potential strategy for the C-HPP.

    abstract::To estimate the potential of the state-of-the-art proteomics technologies on full coverage of the encoding gene products, the Chinese Human Chromosome Proteome Consortium (CCPC) applied a multiomics strategy to systematically analyze the transciptome, translatome, and proteome of the same cultured hepatoma cells with ...

    journal_title:Journal of proteome research

    pub_type: 杂志文章

    doi:10.1021/pr4009018

    authors: Chang C,Li L,Zhang C,Wu S,Guo K,Zi J,Chen Z,Jiang J,Ma J,Yu Q,Fan F,Qin P,Han M,Su N,Chen T,Wang K,Zhai L,Zhang T,Ying W,Xu Z,Zhang Y,Liu Y,Liu X,Zhong F,Shen H,Wang Q,Hou G,Zhao H,Li G,Liu S,G

    更新日期:2014-01-03 00:00:00

  • Proteomic and Biochemical Analyses Reveal a Novel Mechanism for Promoting Protein Ubiquitination and Degradation by UFBP1, a Key Component of Ufmylation.

    abstract::Protein post-translational modification by ubiquitin-fold modifier 1, UFM1, regulates many biological processes such as response to endoplasmic reticulum stress and regulation of tumor progression. A recent study has indicated that the UFM1-binding and PCI domain-containing protein 1 (UFBP1) is required for the conjug...

    journal_title:Journal of proteome research

    pub_type: 杂志文章

    doi:10.1021/acs.jproteome.7b00843

    authors: Zhu Y,Lei Q,Li D,Zhang Y,Jiang X,Hu Z,Xu G

    更新日期:2018-04-06 00:00:00

  • Occurrence and detection of phosphopeptide isomers in large-scale phosphoproteomics experiments.

    abstract::The past decade has been marked by the emergence of selective affinity media and sensitive mass spectrometry instrumentation that facilitated large-scale phosphoproteome analyses and expanded the repertoire of protein phosphorylation. Despite these remarkable advances, the precise location of the phosphorylation site ...

    journal_title:Journal of proteome research

    pub_type: 杂志文章

    doi:10.1021/pr300229m

    authors: Courcelles M,Bridon G,Lemieux S,Thibault P

    更新日期:2012-07-06 00:00:00

  • Evaluating the conformation and binding interface of cap-binding proteins and complexes via ultraviolet photodissociation mass spectrometry.

    abstract::We report the structural analysis of cap-binding proteins using a chemical probe/ultraviolet photodissociation (UVPD) mass spectrometry strategy for evaluating solvent accessibility of proteins. Our methodology utilized a chromogenic probe (NN) to probe the exposed amine residues of wheat eukaryotic translation initia...

    journal_title:Journal of proteome research

    pub_type: 杂志文章

    doi:10.1021/pr400869u

    authors: O'Brien JP,Mayberry LK,Murphy PA,Browning KS,Brodbelt JS

    更新日期:2013-12-06 00:00:00

  • A Novel Proteomics-Based Strategy for the Investigation of Peptide Sequences in Extraterrestrial Samples.

    abstract::Method development is one of the objectives of the astrophysical community for characterizing the organic matter in objects of the solar system. In this context, we report on the development of an enzyme-catalyzed stereoselective hydrolysis, inspired by the proteomics discipline, which has enabled the indirect detecti...

    journal_title:Journal of proteome research

    pub_type: 杂志文章

    doi:10.1021/acs.jproteome.0c00700

    authors: Lange J,Djago F,Eddhif B,Remaury QB,Ruf A,Leitner NKV,Hendecourt LLS,Danger G,Rodier CG,Papot S,Poinot P

    更新日期:2020-10-20 00:00:00

  • Proteomics analysis of rice lesion mimic mutant (spl1) reveals tightly localized probenazole-induced protein (PBZ1) in cells undergoing programmed cell death.

    abstract::Numerous reports have predicted/hypothesized a role for probenazole-induced protein (PBZ1) as a molecular marker in rice self-defense mechanism. However, the precise function of PBZ1 remains unknown. In the present study, we examined PBZ1 as a putative cell death marker in rice. For this, we focused our attention on a...

    journal_title:Journal of proteome research

    pub_type: 杂志文章

    doi:10.1021/pr700878t

    authors: Kim ST,Kim SG,Kang YH,Wang Y,Kim JY,Yi N,Kim JK,Rakwal R,Koh HJ,Kang KY

    更新日期:2008-04-01 00:00:00

  • Characterization of the Interactome of the Porcine Reproductive and Respiratory Syndrome Virus Nonstructural Protein 2 Reveals the Hyper Variable Region as a Binding Platform for Association with 14-3-3 Proteins.

    abstract::Porcine reproductive and respiratory syndrome virus (PRRSV) is a major threat to the swine industry worldwide and hence global food security, exacerbated by a newly emerged highly pathogenic (HP-PRRSV) strain from China. PRRSV nonstructural protein 2 (nsp2) is a multifunctional polypeptide with strain-dependent influe...

    journal_title:Journal of proteome research

    pub_type: 杂志文章

    doi:10.1021/acs.jproteome.5b00396

    authors: Xiao Y,Wu W,Gao J,Smith N,Burkard C,Xia D,Zhang M,Wang C,Archibald A,Digard P,Zhou EM,Hiscox JA

    更新日期:2016-05-06 00:00:00

  • Proteomic analysis of erythrocyte membranes by soft Immobiline gels combined with differential protein extraction.

    abstract::Improvements in proteome analysis of erythrocyte membrane proteins by two-dimensional electrophoresis are here reported. In particular, a differential extraction procedure was set up allowing separation of integral membrane proteins from peripheral species. Moreover, the use of dilute Immobiline gels (down to as low a...

    journal_title:Journal of proteome research

    pub_type: 杂志文章

    doi:10.1021/pr050026v

    authors: Bruschi M,Seppi C,Arena S,Musante L,Santucci L,Balduini C,Scaloni A,Lanciotti M,Righetti PG,Candiano G

    更新日期:2005-07-01 00:00:00

  • A data-mining scheme for identifying peptide structural motifs responsible for different MS/MS fragmentation intensity patterns.

    abstract::Although tandem mass spectrometry (MS/MS) has become an integral part of proteomics, intensity patterns in MS/MS spectra are rarely weighted heavily in most widely used algorithms because they are not yet fully understood. Here a knowledge mining approach is demonstrated to discover fragmentation intensity patterns an...

    journal_title:Journal of proteome research

    pub_type: 杂志文章

    doi:10.1021/pr070106u

    authors: Huang Y,Tseng GC,Yuan S,Pasa-Tolic L,Lipton MS,Smith RD,Wysocki VH

    更新日期:2008-01-01 00:00:00

  • The Muscle Metabolome Differs between Healthy and Frail Older Adults.

    abstract::Populations around the world are aging rapidly. Age-related loss of physiological functions negatively affects quality of life. A major contributor to the frailty syndrome of aging is loss of skeletal muscle. In this study we assessed the skeletal muscle biopsy metabolome of healthy young, healthy older and frail olde...

    journal_title:Journal of proteome research

    pub_type: 杂志文章

    doi:10.1021/acs.jproteome.5b00840

    authors: Fazelzadeh P,Hangelbroek RW,Tieland M,de Groot LC,Verdijk LB,van Loon LJ,Smilde AK,Alves RD,Vervoort J,Müller M,van Duynhoven JP,Boekschoten MV

    更新日期:2016-02-05 00:00:00

  • 193 nm Ultraviolet Photodissociation Mass Spectrometry for Phosphopeptide Characterization in the Positive and Negative Ion Modes.

    abstract::Advances in liquid chromatography tandem mass spectrometry (LC-MS/MS) have permitted phosphoproteomic analysis on a grand scale, but ongoing challenges specifically associated with confident phosphate localization continue to motivate the development of new fragmentation techniques. In the present study, ultraviolet p...

    journal_title:Journal of proteome research

    pub_type: 杂志文章

    doi:10.1021/acs.jproteome.6b00289

    authors: Robinson MR,Taliaferro JM,Dalby KN,Brodbelt JS

    更新日期:2016-08-05 00:00:00

  • Environmental metabolomics: a SWOT analysis (strengths, weaknesses, opportunities, and threats).

    abstract::Metabolomic approaches have the potential to make an exceptional contribution to understanding how chemicals and other environmental stressors can affect both human and environmental health. However, the application of metabolomics to environmental exposures, although getting underway, has not yet been extensively exp...

    journal_title:Journal of proteome research

    pub_type: 杂志文章,评审

    doi:10.1021/pr060623x

    authors: Miller MG

    更新日期:2007-02-01 00:00:00

  • Interactive feature finding in liquid chromatography mass spectrometry data.

    abstract::We propose a method for finding features in liquid chromatography mass spectrometry data that is based on the isotopic pattern of peaks. Our interactive approach to feature finding is carried out across many samples simultaneously and aligns features concurrently. Our scale-independent approach prioritises potential f...

    journal_title:Journal of proteome research

    pub_type: 杂志文章

    doi:10.1021/pr060226m

    authors: Clifford D,Buckley M,Fung KY,Cosgrove L

    更新日期:2006-11-01 00:00:00

  • Protein expression profiles of necrosis and apoptosis induced by 5-fluoro-2'-deoxyuridine in mouse cancer cells.

    abstract::We have investigated the molecular mechanisms regulating the necrosis and apoptosis that occur on treatment of mouse mammary tumor FM3A cells with 5-fluoro-2'-deoxyuridine (FUdR), a potent anticancer agent, using the original clone F28-7 and its variant F28-7-A cells. Previously, we reported an interesting observation...

    journal_title:Journal of proteome research

    pub_type: 杂志文章

    doi:10.1021/pr9010537

    authors: Sato A,Satake A,Hiramoto A,Wataya Y,Kim HS

    更新日期:2010-05-07 00:00:00

  • Temporal quantitative proteomics by iTRAQ 2D-LC-MS/MS and corresponding mRNA expression analysis identify post-transcriptional modulation of actin-cytoskeleton regulators during TGF-beta-Induced epithelial-mesenchymal transition.

    abstract::To gain insights into how TGF-beta regulates epithelial-mesenchymal transition (EMT), we assessed the time course of proteins and mRNAs during EMT by multiplex iTRAQ labeling and 2D-LC-MS/MS, and by hybridization, respectively. Temporal iTRAQ analysis identified 66 proteins as differentially expressed during EMT, incl...

    journal_title:Journal of proteome research

    pub_type: 杂志文章

    doi:10.1021/pr8006478

    authors: Keshamouni VG,Jagtap P,Michailidis G,Strahler JR,Kuick R,Reka AK,Papoulias P,Krishnapuram R,Srirangam A,Standiford TJ,Andrews PC,Omenn GS

    更新日期:2009-01-01 00:00:00

  • Improving Peptide-Spectrum Matching by Fragmentation Prediction Using Hidden Markov Models.

    abstract::Tandem mass spectrometry has become the method of choice for high-throughput, quantitative analysis in proteomics. Peptide spectrum matching algorithms score the concordance between the experimental and the theoretical spectra of candidate peptides by evaluating the number (or proportion) of theoretically possible fra...

    journal_title:Journal of proteome research

    pub_type: 杂志文章

    doi:10.1021/acs.jproteome.8b00499

    authors: Kirik U,Refsgaard JC,Jensen LJ

    更新日期:2019-06-07 00:00:00

  • Proteome characterization of human NK-92 cells identifies novel IFN-alpha and IL-15 target genes.

    abstract::Natural killer (NK) cells are important components of innate immune defense. NK cells kill virus-infected cells and secrete cytokines that are involved in activation of other immune cells. Macrophage-derived cytokines interferon-alpha (IFN-alpha) and interleukin-15 (IL-15) are in turn important activators of NK cells,...

    journal_title:Journal of proteome research

    pub_type: 杂志文章

    doi:10.1021/pr049857b

    authors: Rakkola R,Matikainen S,Nyman TA

    更新日期:2005-01-01 00:00:00

  • Integration of Proteomics and Transcriptomics Data Sets for the Analysis of a Lymphoma B-Cell Line in the Context of the Chromosome-Centric Human Proteome Project.

    abstract::A comprehensive study of the molecular active landscape of human cells can be undertaken to integrate two different but complementary perspectives: transcriptomics, and proteomics. After the genome era, proteomics has emerged as a powerful tool to simultaneously identify and characterize the compendium of thousands of...

    journal_title:Journal of proteome research

    pub_type: 杂志文章

    doi:10.1021/acs.jproteome.5b00474

    authors: Díez P,Droste C,Dégano RM,González-Muñoz M,Ibarrola N,Pérez-Andrés M,Garin-Muga A,Segura V,Marko-Varga G,LaBaer J,Orfao A,Corrales FJ,De Las Rivas J,Fuentes M

    更新日期:2015-09-04 00:00:00

  • Protein profiling of human pancreatic islets by two-dimensional gel electrophoresis and mass spectrometry.

    abstract::Completion of the human genome sequence has provided scientists with powerful resources with which to explore the molecular events associated with disease states such as diabetes. Understanding the relative levels of expression of gene products, especially of proteins, and their post-translational modifications will b...

    journal_title:Journal of proteome research

    pub_type: 杂志文章

    doi:10.1021/pr050024a

    authors: Ahmed M,Forsberg J,Bergsten P

    更新日期:2005-05-01 00:00:00

  • In-depth proteomic and glycomic analysis of the adult-stage Cooperia oncophora excretome/secretome.

    abstract::Cooperia oncophora is one of the most common intestinal parasitic nematodes in cattle worldwide. To date, C. oncophora infections are treated using broad-spectrum anthelmintics. However, during the past decade, reports of anthelmintic resistance in this parasite species have emerged worldwide, necessitating new avenue...

    journal_title:Journal of proteome research

    pub_type: 杂志文章

    doi:10.1021/pr400114y

    authors: Borloo J,De Graef J,Peelaers I,Nguyen DL,Mitreva M,Devreese B,Hokke CH,Vercruysse J,Claerebout E,Geldhof P

    更新日期:2013-09-06 00:00:00

  • Establishing a reliable multiple reaction monitoring-based method for the quantification of obesity-associated comorbidities in serum and adipose tissue requires intensive clinical validation.

    abstract::Multiple reaction monitoring (MRM)-based mass spectrometric quantification of peptides and their corresponding proteins has been successfully applied for biomarker validation in serum. The option of multiplexing offers the chance to analyze various proteins in parallel, which is especially important in obesity researc...

    journal_title:Journal of proteome research

    pub_type: 杂志文章

    doi:10.1021/pr500722k

    authors: Oberbach A,Schlichting N,Neuhaus J,Kullnick Y,Lehmann S,Heinrich M,Dietrich A,Mohr FW,von Bergen M,Baumann S

    更新日期:2014-12-05 00:00:00

  • Impact of prenatal disorders on the metabolic profile of second trimester amniotic fluid: a nuclear magnetic resonance metabonomic study.

    abstract::This paper describes a metabonomic study of prenatal disorders using nuclear magnetic resonance (NMR) spectroscopy of amniotic fluid (AF) collected in the second trimester of pregnancy, to search for metabolite markers of fetal malformations, prediagnostic gestational diabetes (GD), preterm delivery (PTD), early ruptu...

    journal_title:Journal of proteome research

    pub_type: 杂志文章

    doi:10.1021/pr100815q

    authors: Graca G,Duarte IF,Barros AS,Goodfellow BJ,Diaz SO,Pinto J,Carreira IM,Galhano E,Pita C,Gil AM

    更新日期:2010-11-05 00:00:00

  • Acute phencyclidine treatment induces extensive and distinct protein phosphorylation in rat frontal cortex.

    abstract::Phencyclidine (PCP), a noncompetitive N-methyl-D-aspartate receptor antagonist, induces psychotomimetic effects in humans and animals. Administration of PCP to rodents is used as a preclinical model for schizophrenia; however, the molecular mechanisms underlying the symptoms remain largely unknown. Acute PCP treatment...

    journal_title:Journal of proteome research

    pub_type: 杂志文章

    doi:10.1021/pr4010794

    authors: Palmowski P,Rogowska-Wrzesinska A,Williamson J,Beck HC,Mikkelsen JD,Hansen HH,Jensen ON

    更新日期:2014-03-07 00:00:00

  • Fecal Metabolomics as a Novel Noninvasive Method for Short-Term Stress Monitoring in Beef Cattle.

    abstract::Traditional measures of short-term stress response such as fecal glucocorticoid metabolites (FGM) are widely used in controlled settings to quantify the intensity of stimulation to which cattle are exposed. However, FGMs present several methodological and interpretation pitfalls when applied on animals in free-ranging...

    journal_title:Journal of proteome research

    pub_type: 杂志文章

    doi:10.1021/acs.jproteome.9b00655

    authors: Valerio A,Casadei L,Giuliani A,Valerio M

    更新日期:2020-02-07 00:00:00

  • Hyperplex-MRM: a hybrid multiple reaction monitoring method using mTRAQ/iTRAQ labeling for multiplex absolute quantification of human colorectal cancer biomarker.

    abstract::Novel biomarker verification assays are urgently required to improve the efficiency of biomarker development. Benefitting from lower development costs, multiple reaction monitoring (MRM) has been used for biomarker verification as an alternative to immunoassay. However, in general MRM analysis, only one sample can be ...

    journal_title:Journal of proteome research

    pub_type: 杂志文章

    doi:10.1021/pr4005025

    authors: Yin HR,Zhang L,Xie LQ,Huang LY,Xu Y,Cai SJ,Yang PY,Lu HJ

    更新日期:2013-09-06 00:00:00

  • Screening of Lipids for Early Triage and Dose Estimation after Acute Radiation Exposure in Rat Plasma Based on Targeted Lipidomics Analysis.

    abstract::Rapid early triage and dose estimation is vital for limited medical resource allocation and treatment of a large number of the wounded after radiological accidents. Lipidomics has been utilized to delineate biofluid lipid signatures after irradiation. Here, high-coverage targeted lipidomics was employed to screen radi...

    journal_title:Journal of proteome research

    pub_type: 杂志文章

    doi:10.1021/acs.jproteome.0c00560

    authors: Xi C,Zhao H,Lu X,Cai TJ,Li S,Liu KH,Tian M,Liu QJ

    更新日期:2021-01-01 00:00:00

  • High Resolution GC-Orbitrap-MS Metabolomics Using Both Electron Ionization and Chemical Ionization for Analysis of Human Plasma.

    abstract::Gas chromatography-mass spectrometry (GC-MS) platforms are typically run in electron ionization (EI) mode for mass spectral matching and metabolite annotation. With the advent of high resolution mass spectrometry (HRMS), soft ionization techniques such as chemical ionization (CI) may provide additional coverage for co...

    journal_title:Journal of proteome research

    pub_type: 杂志文章

    doi:10.1021/acs.jproteome.9b00774

    authors: Misra BB,Olivier M

    更新日期:2020-07-02 00:00:00

  • Return of the metabolic trajectory to the original area after human bone marrow mesenchymal stem cell transplantation for the treatment of fulminant hepatic failure.

    abstract::Our recent study first demonstrated that human bone marrow mesenchymal stem cell (hBMSC) transplantation could prevent death from fulminant hepatic failure (FHF) in pigs. To further clarify the metabolic mechanism of hBMSC transplantation in FHF, the plasma collected from FHF pigs that received transplantation of hBMS...

    journal_title:Journal of proteome research

    pub_type: 杂志文章

    doi:10.1021/pr3002639

    authors: Li J,Xin J,Hao S,Zhang L,Jiang L,Chen D,Xie Q,Xu W,Cao H,Li L

    更新日期:2012-06-01 00:00:00