Critical assessment of assembly strategies for non-model species mRNA-Seq data and application of next-generation sequencing to the comparison of C(3) and C(4) species.

abstract：:Plants show varied cellular responses to salinity that are partly associated with maintaining low cytosolic Na(+) levels and a high K(+)/Na(+) ratio. Plant metabolites change with elevated Na(+), some changes are likely to help restore osmotic balance while others protect Na(+)-sensitive proteins. Metabolic responses ...

journal_title：Journal of experimental botany

authors： Widodo,Patterson JH,Newbigin E,Tester M,Bacic A,Roessner U

更新日期：2009-01-01 00:00:00

abstract：:At the onset of ripening, some fleshy fruits shift the dominant water import pathway from the xylem to the phloem, but the cause for the decline in xylem inflow remains obscure. This study found that xylem-mobile dye movement into grape berries decreased despite transient increases in berry growth and transpiration du...

journal_title：Journal of experimental botany

authors： Zhang Y,Keller M

更新日期：2017-01-01 00:00:00

abstract：:In grafted plants, rootstocks assure the mineral nutrition of the scion and modify its development. In this study, we show that two grapevine rootstock genotypes have different shoot branching architectures when cultivated as cuttings and that this trait is transmitted to the scion when grafted. Shoot branching plasti...

journal_title：Journal of experimental botany

authors： Cochetel N,Météier E,Merlin I,Hévin C,Pouvreau JB,Coutos-Thévenot P,Hernould M,Vivin P,Cookson SJ,Ollat N,Lauvergeat V

更新日期：2018-07-18 00:00:00

abstract：:Water deficit during male meiosis in wheat (Triticum aestivum L.) causes pollen sterility. With a view to identifying the internal trigger for this failure, it was found that water stress specifically impairs the activities of vacuolar and cell-wall invertases in anthers prior to the arrest of pollen development. The ...

journal_title：Journal of experimental botany

authors： Koonjul PK,Minhas JS,Nunes C,Sheoran IS,Saini HS

更新日期：2005-01-01 00:00:00

abstract：:Quantitative RT-PCR (reverse transcription polymerase chain reaction, also known as qRT-PCR or real-time RT-PCR) has been used in large proportions of transcriptome analyses published to date. The accuracy of the results obtained by this method strongly depends on accurate transcript normalization using stably express...

journal_title：Journal of experimental botany

authors： Guénin S,Mauriat M,Pelloux J,Van Wuytswinkel O,Bellini C,Gutierrez L

更新日期：2009-01-01 00:00:00

abstract：:Shoot branching is the process by which axillary buds, located on the axil of a leaf, develop and form new flowers or branches. The process by which a dormant bud activates and becomes an actively growing branch is complex and very finely tuned. Bud outgrowth is regulated by the interaction of environmental signals an...

journal_title：Journal of experimental botany

authors： Ongaro V,Leyser O

更新日期：2008-01-01 00:00:00

abstract：:Stress induces changes of modified nucleosides in tRNA, and these changes can influence codon-anticodon interaction and therefore the translation of target proteins. Certain nucleoside modification genes are associated with regulation of stress tolerance and immune response in plants. In this study, we found a dramati...

journal_title：Journal of experimental botany

authors： Wang Y,Li D,Gao J,Li X,Zhang R,Jin X,Hu Z,Zheng B,Persson S,Chen P

更新日期：2017-03-01 00:00:00

abstract：:The hydrophobic cuticular membrane of land plants performs a number of important roles during fruit development, including protection from a range of abiotic and biotic stresses. The components of the fleshy fruit cuticle are synthesized and secreted from the epidermal cells. While the biosynthetic and transport pathw...

journal_title：Journal of experimental botany

authors： Hen-Avivi S,Lashbrooke J,Costa F,Aharoni A

更新日期：2014-08-01 00:00:00

abstract：:Antisense- or RNAi-mediated suppression of the biosynthesis of nutritionally inferior storage proteins is a promising strategy for improving the amino acid profile of seeds. However, the potential pleiotropic effects of this on interconnected pathways and the agronomic quality traits need to be addressed. In the curre...

journal_title：Journal of experimental botany

authors： Hansen M,Lange M,Friis C,Dionisio G,Holm PB,Vincze E

更新日期：2007-01-01 00:00:00

abstract：:This study describes the variation in the mean relative shoot Ca content within the angiosperms at the ordinal level. Data were derived from studies in the literature in which the shoot Ca content of two or more species had been compared, and from a hydroponic experiment in which plants were selected to represent the ...

journal_title：Journal of experimental botany

authors： Broadley MR,Bowen HC,Cotterill HL,Hammond JP,Meacham MC,Mead A,White PJ

更新日期：2003-05-01 00:00:00

abstract：:Oleoresin produced and stored in pine tree leaves provides direct resistance to herbivores, while leaf volatile terpenes (LVT) in the resin are also powerful airborne infochemicals. Resin concentration and profile show considerable spatial and temporal phenotypic variation within and among pine populations. LVT bioche...

journal_title：Journal of experimental botany

authors： Sampedro L,Moreira X,Llusia J,Peñuelas J,Zas R

更新日期：2010-10-01 00:00:00

abstract：:Plant cell elongation depends on the physical properties of the primary cell wall. Because xyloglucan endotransglycosylases (XETs) are enzymes that mediate cleavage and rejoining of the beta(1-4)-XG backbone of primary cell wall, they are potentially involved in cell elongation. In this paper, the growth of the barley...

journal_title：Journal of experimental botany

authors： Burstin J

更新日期：2000-05-01 00:00:00

abstract：:Phospholipid signaling plays an important role in plant immune responses against phytopathogenic bacteria in Nicotiana benthamiana. Here, we isolated two phospholipase C2 (PLC2) orthologs in the N. benthamiana genome, designated as PLC2-1 and 2-2. Both NbPLC2-1 and NbPLC2-2 were expressed in most tissues and were indu...

journal_title：Journal of experimental botany

authors： Kiba A,Nakano M,Hosokawa M,Galis I,Nakatani H,Shinya T,Ohnishi K,Hikichi Y

更新日期：2020-08-06 00:00:00

abstract：:To investigate the relationship between a carotenoid profile and gene expression for carotenoid cleavage dioxygenases, three citrus varieties that exhibit different 9-cis-violaxanthin levels in their juice sacs, Satsuma mandarin (Citrus unshiu Marc.; a variety accumulating a low level of 9-cis-violaxanthin), Valencia ...

journal_title：Journal of experimental botany

authors： Kato M,Matsumoto H,Ikoma Y,Okuda H,Yano M

更新日期：2006-01-01 00:00:00

abstract：:Many stresses are associated with increased accumulation of reactive oxygen species (ROS) and polyamines (PAs). PAs act as ROS scavengers, but export of putrescine and/or PAs to the apoplast and their catabolization by amine oxidases gives rise to H2O2 and other ROS, including hydroxyl radicals ((•)OH). PA catabolizat...

journal_title：Journal of experimental botany

authors： Pottosin I,Velarde-Buendía AM,Bose J,Zepeda-Jazo I,Shabala S,Dobrovinskaya O

更新日期：2014-03-01 00:00:00

abstract：:Bud break in raspberry (Rubus idaeus L.) is often poor and uneven, with many of the subapical buds remaining in a dormant state. In order to determine the dormancy status of raspberry buds, an empirical measure of bud burst in a growth-permissive environment following exposure to chilling (4 degrees C cold storage) wa...

journal_title：Journal of experimental botany

authors： Mazzitelli L,Hancock RD,Haupt S,Walker PG,Pont SD,McNicol J,Cardle L,Morris J,Viola R,Brennan R,Hedley PE,Taylor MA

更新日期：2007-01-01 00:00:00

abstract：:Cell wall disassembly in softening fruits is a complex process involving the cumulative action of many families of wall-modifying proteins on interconnected polysaccharide matrices. One strategy to elucidate the in vivo substrates of specific enzymes and their relative importance and contribution to wall modification ...

journal_title：Journal of experimental botany

authors： Santiago-Doménech N,Jiménez-Bemúdez S,Matas AJ,Rose JK,Muñoz-Blanco J,Mercado JA,Quesada MA

更新日期：2008-01-01 00:00:00

abstract：:Arabinogalactan proteins (AGPs) comprise a family of hydroxyproline-rich glycoproteins that are implicated in plant growth and development. In this study, 69 AGPs are identified from the rice genome, including 13 classical AGPs, 15 arabinogalactan (AG) peptides, three non-classical AGPs, three early nodulin-like AGPs ...

journal_title：Journal of experimental botany

authors： Ma H,Zhao J

更新日期：2010-06-01 00:00:00

abstract：:Alloplasmic lines of Brassica napus with rearranged Arabidopsis thaliana mitochondrial DNA are male sterile and vegetatively altered compared with B. napus cv. Hanna. The CMS lines contain pure nuclear and plastid genomes from B. napus. Cross-sections of leaves revealed elevated starch accumulation and a higher number...

journal_title：Journal of experimental botany

authors： Teixeira RT,Knorpp C,Glimelius K

更新日期：2005-04-01 00:00:00

abstract：:The relationship between photosynthetic energy conservation and thermal dissipation of light energy is considered, with emphasis on organisms which tolerate full desiccation without suffering photo-oxidative damage in strong light. As soon as water becomes available to dry poikilohydric organisms, they resume photosyn...

journal_title：Journal of experimental botany

authors： Heber U,Lange OL,Shuvalov VA

更新日期：2006-01-01 00:00:00

abstract：:In recent years, efforts to exploit sunlight, a free and abundant energy source, have sped up dramatically. Oxygenic photosynthetic organisms, such as higher plants, algae, and cyanobacteria, can convert solar energy into chemical energy very efficiently using water as an electron donor. By providing organic building ...

journal_title：Journal of experimental botany

authors： Russo DA,Zedler JAZ,Jensen PE

更新日期：2019-03-27 00:00:00

abstract：:Sweet cherry is a non-climacteric fruit and its ripening is regulated by abscisic acid (ABA) during fruit development. In this study, four cDNAs (PacCYP707A1-4) encoding 8'-hydroxylase, a key enzyme in the oxidative catabolism of ABA, were identified in sweet cherry fruits using tobacco rattle virus-induced gene silen...

journal_title：Journal of experimental botany

authors： Li Q,Chen P,Dai S,Sun Y,Yuan B,Kai W,Pei Y,He S,Liang B,Zhang Y,Leng P

更新日期：2015-07-01 00:00:00

abstract：:Soil composition largely defines the living conditions of plants and represents one of their most relevant, dynamic and complex environmental cues. The effective concentrations of many either tolerated or essential ions and compounds in the soil usually differ from the optimum that would be most suitable for plants. I...

journal_title：Journal of experimental botany

authors： Manishankar P,Wang N,Köster P,Alatar AA,Kudla J

更新日期：2018-05-24 00:00:00

abstract：:Particular physiological traits allow the vascular plants Deschampsia antarctica Desv. and Colobanthus quitensis (Kunth) Bartl. to inhabit Antarctica. The photosynthetic performance of these species was evaluated in situ, focusing on diffusive and biochemical constraints to CO2 assimilation. Leaf gas exchange, Chl a f...

journal_title：Journal of experimental botany

authors： Sáez PL,Bravo LA,Cavieres LA,Vallejos V,Sanhueza C,Font-Carrascosa M,Gil-Pelegrín E,Javier Peguero-Pina J,Galmés J

更新日期：2017-05-17 00:00:00

abstract：:A highly reproducible regeneration system through somatic embryogenesis from the excised mature embryos (MEs) of dry seeds of a range of European barley cultivars was developed. By minimizing the germination of plated MEs, primary callus could be obtained with high frequency which permitted efficient embryogenesis and...

journal_title：Journal of experimental botany

authors： Sharma VK,Hänsch R,Mendel RR,Schulze J

更新日期：2005-07-01 00:00:00

abstract：:Cytokinin hormones are important regulators of development and environmental responses of plants that execute their action via the molecular machinery of signal perception and transduction. The limiting step of the whole process is the availability of the hormone in suitable concentrations in the right place and at th...

journal_title：Journal of experimental botany

authors： Frébort I,Kowalska M,Hluska T,Frébortová J,Galuszka P

更新日期：2011-05-01 00:00:00

abstract：:Cortical microtubules (CMTs) are often aligned in a particular direction in individual cells or even in groups of cells and play a central role in the definition of growth anisotropy. How the CMTs themselves are aligned is not well known, but two hypotheses have been proposed. According to the first hypothesis, CMTs a...

journal_title：Journal of experimental botany

authors： Burian A,Ludynia M,Uyttewaal M,Traas J,Boudaoud A,Hamant O,Kwiatkowska D

更新日期：2013-12-01 00:00:00

abstract：:Ozone induces rapid activation of SIPK, a mitogen-activated protein kinase (MAPK) in tobacco. Through transgenic manipulation it has previously been shown that overexpression of SIPK leads to enhanced ozone-induced lesion formation with concomitant accumulation of ROS. In spite of this hypersensitive phenotype, the ef...

journal_title：Journal of experimental botany

authors： Samuel MA,Walia A,Mansfield SD,Ellis BE

更新日期：2005-08-01 00:00:00

abstract：:The aim of this study was to investigate the effect of salinity stress on root growth at the phytomer level in wheat to provide novel site-specific understanding of salinity damage in roots. Seedlings of 13 wheat varieties were grown hydroponically. Plants were exposed to three concentrations of NaCl, 0 (control), 50 ...

journal_title：Journal of experimental botany

authors： Robin AH,Matthew C,Uddin MJ,Bayazid KN

更新日期：2016-06-01 00:00:00

abstract：:Although several per cent of net carbon assimilation can be re-released as isoprene emissions to the atmosphere by many tropical plants, much uncertainty remains regarding its biological significance. In a previous study, we detected emissions of isoprene and its oxidation products methyl vinyl ketone (MVK) and methac...

journal_title：Journal of experimental botany

authors： Jardine KJ,Meyers K,Abrell L,Alves EG,Yanez Serrano AM,Kesselmeier J,Karl T,Guenther A,Chambers JQ,Vickers C

更新日期：2013-09-01 00:00:00