Bacillus pallidus sp. nov., isolated from forest soil.

Abstract:

:A Gram-positive bacterium, designated strain CW 7(T), was isolated from forest soil in Anhui Province, south-east China. Cells were strictly aerobic, motile with peritrichous flagella and rod-shaped. The strain grew optimally at 30-37 degrees C and pH 7.0-8.0. The major fatty acids of strain CW 7(T) were anteiso-C(15 : 0), iso-C(15 : 0) and anteiso-C(17 : 0). The predominant menaquinone was MK-7. The cell-wall peptidoglycan contained meso-diaminopimelic acid. The G+C content of the genomic DNA was 42.3 mol%. Phylogenetic analysis indicated that strain CW 7(T) belonged to a monophyletic cluster within the genus Bacillus and showed 16S rRNA gene sequence similarities of less than 96.5 % to recognized species of the genus Bacillus. The results of the polyphasic taxonomic study, including phenotypic, chemotaxonomic and phylogenetic analyses, showed that strain CW 7(T) represents a novel species of the genus Bacillus, for which the name Bacillus pallidus sp. nov. is proposed. The type strain is CW 7(T) (=KCTC 13200(T)=CCTCC AB 207188(T)=LMG 24451(T)).

authors

Zhou Y,Wei W,Che Q,Xu Y,Wang X,Huang X,Lai R

doi

10.1099/ijs.0.2008/000075-0

subject

Has Abstract

pub_date

2008-12-01 00:00:00

pages

2850-4

issue

Pt 12

eissn

1466-5026

issn

1466-5034

pii

58/12/2850

journal_volume

58

pub_type

杂志文章
  • Sphingobium lactosutens sp. nov., isolated from a hexachlorocyclohexane dump site and Sphingobium abikonense sp. nov., isolated from oil-contaminated soil.

    abstract::The taxonomic position of a yellow-pigmented bacterial strain, designated DS20T, isolated from a hexachlorocyclohexane dump site at Lucknow, India was determined based on a polyphasic taxonomic characterization. A neighbour-joining tree based on 16S rRNA gene sequences showed that strain DS20T occupied a distinct phyl...

    journal_title:International journal of systematic and evolutionary microbiology

    pub_type: 杂志文章

    doi:10.1099/ijs.0.004739-0

    authors: Kumari H,Gupta SK,Jindal S,Katoch P,Lal R

    更新日期:2009-09-01 00:00:00

  • Taxonomic revision of water-bloom-forming species of oscillatorioid cyanobacteria.

    abstract::A polyphasic approach was used to clarify the taxonomy of the water-bloom-forming oscillatorioid cyanobacteria. Seventy-five strains of oscillatorioid cyanobacteria were characterized by 16S rDNA sequence analysis, DNA base composition, DNA-DNA hybridization, fatty acid composition, phycobilin pigment composition, com...

    journal_title:International journal of systematic and evolutionary microbiology

    pub_type: 杂志文章

    doi:10.1099/00207713-52-5-1577

    authors: Suda S,Watanabe MM,Otsuka S,Mahakahant A,Yongmanitchai W,Nopartnaraporn N,Liu Y,Day JG

    更新日期:2002-09-01 00:00:00

  • Desulfovirga adipica gen. nov., sp. nov., an adipate-degrading, gram-negative, sulfate-reducing bacterium.

    abstract::A novel, mesophilic, Gram-negative bacterium was isolated from an anaerobic digestor for municipal wastewater. The bacterium degraded adipate in the presence of sulfate, sulfite, thiosulfate and elemental sulfur. (E)-2-Hexenedioate accumulated transiently in the degradation of adipate. (E)-2-Hexenedioate, (E)-3-hexene...

    journal_title:International journal of systematic and evolutionary microbiology

    pub_type: 杂志文章

    doi:10.1099/00207713-50-2-639

    authors: Tanaka K,Stackebrandt E,Tohyama S,Eguchi T

    更新日期:2000-03-01 00:00:00

  • Carboxydothermus islandicus sp. nov., a thermophilic, hydrogenogenic, carboxydotrophic bacterium isolated from a hot spring.

    abstract::An anaerobic, thermophilic bacterium, strain SET IS-9(T), was isolated from an Icelandic hot spring. Cells of strain SET IS-9(T) are short, slightly curved, motile rods. The strain grows chemolithotrophically on CO, producing equimolar quantities of H(2) and CO(2). It also grows fermentatively on lactate or pyruvate i...

    journal_title:International journal of systematic and evolutionary microbiology

    pub_type: 杂志文章

    doi:10.1099/ijs.0.030288-0

    authors: Novikov AA,Sokolova TG,Lebedinsky AV,Kolganova TV,Bonch-Osmolovskaya EA

    更新日期:2011-10-01 00:00:00

  • Alteromonas marina sp. nov., isolated from sea water of the East Sea in Korea.

    abstract::Two Gram-negative, motile, non-spore-forming and moderately halophilic rods (strains SW-47(T) and SW-49) were isolated from sea water of the East Sea in Korea and subjected to a polyphasic taxonomic study. The two strains grew optimally between 30 and 37 degrees C, and grew at 4 and 44 degrees C but not at temperature...

    journal_title:International journal of systematic and evolutionary microbiology

    pub_type: 杂志文章

    doi:10.1099/ijs.0.02536-0

    authors: Yoon JH,Kim IG,Kang KH,Oh TK,Park YH

    更新日期:2003-09-01 00:00:00

  • The status of the species Enterobacter siamensisKhunthongpan et al. 2014. Request for an Opinion.

    abstract::In the course of a taxonomic study describing novel species of the genus Enterobacter it was found that the 16S rRNA gene sequence of the type strain of Enterobacter siamensis, obtained both directly from the authors of the publication on Enterobacter siamensis and from the Korean Collection for Type Cultures (C2361T ...

    journal_title:International journal of systematic and evolutionary microbiology

    pub_type: 杂志文章

    doi:10.1099/ijsem.0.000777

    authors: Kämpfer P,Doijad S,Chakraborty T,Glaeser SP

    更新日期:2016-01-01 00:00:00

  • Bacillus aurantiacus sp. nov., an alkaliphilic and moderately halophilic bacterium isolated from Hungarian soda lakes.

    abstract::Three alkaliphilic and moderately halophilic strains designated K1-5T, K1-10 and B1-1, characterized by optimal growth at pH 9.0-10.0 and at 3-7 % (w/v) NaCl, were isolated from extremely shallow, alkaline soda lakes located in Hungary. Cells of the strains are Gram-positive, straight rods and form a central to subter...

    journal_title:International journal of systematic and evolutionary microbiology

    pub_type: 杂志文章

    doi:10.1099/ijs.0.65325-0

    authors: Borsodi AK,Márialigeti K,Szabó G,Palatinszky M,Pollák B,Kéki Z,Kovács AL,Schumann P,Tóth EM

    更新日期:2008-04-01 00:00:00

  • Pseudarthrobacter psychrotolerans sp. nov., a cold-adapted bacterium isolated from Antarctic soil.

    abstract::A novel cold-tolerant bacterium, designated strain YJ56T, was isolated from Antarctic soil collected from the Cape Burk area. Phylogenetic analysis through 16S rRNA gene sequence similarity revealed that strain YJ56T was most closely related to the genus Pseudarthrobacter, including Pseudarthrobacter oxydans DSM 20119...

    journal_title:International journal of systematic and evolutionary microbiology

    pub_type: 杂志文章

    doi:10.1099/ijsem.0.004505

    authors: Shin Y,Lee BH,Lee KE,Park W

    更新日期:2020-12-01 00:00:00

  • Nesterenkonia suensis sp. nov., a haloalkaliphilic actinobacterium isolated from a salt pan.

    abstract::A Gram-positive, non-motile, non-spore-forming actinobacterium designated strain Sua-BAC020(T) was isolated from brine from Sua salt pan in Botswana. The strain was alkaliphilic and moderately halophilic, displaying optimal growth at 35-37 °C, pH 9 and 2.5 % (w/v) NaCl. Comparative 16S rRNA gene sequence analysis show...

    journal_title:International journal of systematic and evolutionary microbiology

    pub_type: 杂志文章

    doi:10.1099/ijs.0.035006-0

    authors: Govender L,Naidoo L,Setati ME

    更新日期:2013-01-01 00:00:00

  • Characterization of 'Candidatus Neoehrlichia lotoris' (family Anaplasmataceae) from raccoons (Procyon lotor).

    abstract::Recently, a novel ehrlichial organism was isolated from a raccoon (Procyon lotor) and the isolate (RAC413) was infectious to two naïve raccoons but not laboratory mice, rats or rabbits. In this study, amplification and sequencing of four gene targets (16S rRNA gene, groESL, gltA and rpoB) confirmed that the novel ehrl...

    journal_title:International journal of systematic and evolutionary microbiology

    pub_type: 杂志文章

    doi:10.1099/ijs.0.65836-0

    authors: Yabsley MJ,Murphy SM,Luttrell MP,Wilcox BR,Howerth EW,Munderloh UG

    更新日期:2008-12-01 00:00:00

  • Jiella pacifica sp. nov., isolated from the West Pacific Ocean.

    abstract::A Gram-stain-negative bacterium, designated strain 40Bstr34T, isolated from a sediment sample from the West Pacific Ocean, was taxonomically characterized by using a polyphasic approach. The strain was phylogenetically close to Jiella aquimaris LZB041T and Jiella endophytica CBS5Q-3T, with 16S rRNA gene sequence simil...

    journal_title:International journal of systematic and evolutionary microbiology

    pub_type: 杂志文章

    doi:10.1099/ijsem.0.004295

    authors: Xue Z,Zhu S,Chen X,Chen T,Ren N,Chen Y,Dong B,Shen X,Huang Y,Yang J,Chen J

    更新日期:2020-07-01 00:00:00

  • Pseudomonas composti sp. nov., isolated from compost samples.

    abstract::Two unusual, Gram-negative, catalase- and oxidase-positive rods, designated C2(T) and C5, were isolated from compost samples. Comparative 16S rRNA gene sequencing studies demonstrated that both isolates were members of the genus Pseudomonas and belonged to the Pseudomonas aeruginosa group. Strain C2(T) was most closel...

    journal_title:International journal of systematic and evolutionary microbiology

    pub_type: 杂志文章

    doi:10.1099/ijs.0.027086-0

    authors: Gibello A,Vela AI,Martín M,Mengs G,Alonso PZ,Garbi C,Fernández-Garayzábal JF

    更新日期:2011-12-01 00:00:00

  • Thioalbus denitrificans gen. nov., sp. nov., a chemolithoautotrophic sulfur-oxidizing gammaproteobacterium, isolated from marine sediment.

    abstract::A mesophilic, facultatively anaerobic, autotrophic bacterium, designated strain Su4(T), was isolated from marine sediment. The isolate was able to utilize reduced sulfur compounds including thiosulfate, tetrathionate, sulfur and sulfide but not sulfite as the energy source. Growth occurred under aerobic and denitrifyi...

    journal_title:International journal of systematic and evolutionary microbiology

    pub_type: 杂志文章

    doi:10.1099/ijs.0.024844-0

    authors: Park SJ,Pham VH,Jung MY,Kim SJ,Kim JG,Roh DH,Rhee SK

    更新日期:2011-09-01 00:00:00

  • Citreimonas salinaria gen. nov., sp. nov., a member of the Roseobacter clade isolated from a solar saltern.

    abstract::A lemon-shaped marine bacterium, strain CL-SP20(T), isolated from hypersaline water from a solar saltern in Korea, was characterized in terms of its physiological and biochemical features, its fatty acid profile and its phylogenetic position based on 16S rRNA gene sequences. Analysis of the 16S rRNA gene sequence reve...

    journal_title:International journal of systematic and evolutionary microbiology

    pub_type: 杂志文章

    doi:10.1099/ijs.0.64373-0

    authors: Choi DH,Cho BC

    更新日期:2006-12-01 00:00:00

  • Atopobium deltae sp. nov., isolated from the blood of a patient with Fournier's gangrene.

    abstract::A Gram-stain-positive, obligately anaerobic, short rod, designated strain HHRM1715(T), was isolated from the blood of a patient with Fournier's gangrene, complicated by sepsis. On the basis of 16S rRNA gene sequence analysis, strain HHRM1715(T) was shown to belong to the genus Atopobium and was most closely related to...

    journal_title:International journal of systematic and evolutionary microbiology

    pub_type: 杂志文章

    doi:10.1099/ijs.0.065243-0

    authors: Cools P,Oyaert M,Vaneechoutte M,De Laere E,Vervaeke S

    更新日期:2014-09-01 00:00:00

  • Dietzia alimentaria sp. nov., isolated from a traditional Korean food.

    abstract::An actinobacterial strain, designated 72(T), was isolated from a traditional salt-fermented seafood in Korea. Colonies were coral red and cells were Gram-reaction-positive, non-motile rods. Strain 72(T) grew with 0-10 % (w/v) NaCl, at pH 7-10 and at 15-37 °C. Optimum growth conditions were 2 % NaCl, pH 7.0 and 30 °C. ...

    journal_title:International journal of systematic and evolutionary microbiology

    pub_type: 杂志文章

    doi:10.1099/ijs.0.021501-0

    authors: Kim J,Roh SW,Choi JH,Jung MJ,Nam YD,Kim MS,Park EJ,Shin KS,Bae JW

    更新日期:2011-09-01 00:00:00

  • Streptomyces zinciresistens sp. nov., a zinc-resistant actinomycete isolated from soil from a copper and zinc mine.

    abstract::A filamentous actinomycete, designated strain CCNWNQ 0016(T), was isolated from soil from a zinc and copper mine in Shaanxi province, north-western China. A polyphasic taxonomic study was carried out to establish the status of strain CCNWNQ 0016(T). Chemical and morphological properties of the isolate were similar to ...

    journal_title:International journal of systematic and evolutionary microbiology

    pub_type: 杂志文章

    doi:10.1099/ijs.0.024018-0

    authors: Lin YB,Wang XY,Li HF,Wang NN,Wang HX,Tang M,Wei GH

    更新日期:2011-03-01 00:00:00

  • Pontibacter amylolyticus sp. nov., isolated from a deep-sea sediment hydrothermal vent field.

    abstract::A Gram-stain-negative, short rod-shaped bacterium, designated 9-2T, was isolated from a sediment sample collected from a hydrothermal vent field on the south-west Indian Ridge. It formed red colonies, produced carotenoid-like pigments and did not produce bacteriochlorophyll a. Strain 9-2T was positive for hydrolysis o...

    journal_title:International journal of systematic and evolutionary microbiology

    pub_type: 杂志文章

    doi:10.1099/ijsem.0.000944

    authors: Wu YH,Zhou P,Jian SL,Liu ZS,Wang CS,Oren A,Xu XW

    更新日期:2016-04-01 00:00:00

  • Thermogutta terrifontis gen. nov., sp. nov. and Thermogutta hypogea sp. nov., thermophilic anaerobic representatives of the phylum Planctomycetes.

    abstract::Two novel strains of thermophilic planctomycetes were recovered from terrestrial and subterranean habitats. Strain R1(T) was isolated from a hot spring (Kunashir Island, Russia) and strain SBP2(T) was isolated from a deep gold mine (South Africa). Both isolates grew in the temperature range 30-60 °C and pH range 5.0-8...

    journal_title:International journal of systematic and evolutionary microbiology

    pub_type: 杂志文章

    doi:10.1099/ijs.0.000009

    authors: Slobodkina GB,Kovaleva OL,Miroshnichenko ML,Slobodkin AI,Kolganova TV,Novikov AA,van Heerden E,Bonch-Osmolovskaya EA

    更新日期:2015-03-01 00:00:00

  • Actibacterium ureilyticum sp. nov., isolated from seawater.

    abstract::A polyphasic approach was used to characterize a novel marine bacterial strain, designated LS-811T, isolated from seawater of the South China Sea (Taiwan). Cells of strain LS-811Twere Gram-staining negative, aerobic and rod-shaped with polar flagella. The 16S rRNA gene sequence analysis of strain LS-811T showed highes...

    journal_title:International journal of systematic and evolutionary microbiology

    pub_type: 杂志文章

    doi:10.1099/ijsem.0.001052

    authors: Lin SY,Young CC,Hameed A,Liu YC,Hsu YH,Chung WC,Young LS

    更新日期:2016-08-01 00:00:00

  • Brachybacterium hainanense sp. nov., isolated from noni (Morinda citrifolia L.) branch.

    abstract::A Gram-stain-positive bacterial strain, designated as NR2T, isolated from noni (Morinda citrifolia L.) branch was investigated using a polyphasic taxonomic approach. The cells were small coccoid to ovoid, non-spore-forming and motile. Phylogenetic analysis based on 16S rRNA gene sequences showed that the strain was a ...

    journal_title:International journal of systematic and evolutionary microbiology

    pub_type: 杂志文章

    doi:10.1099/ijsem.0.000559

    authors: Liu Y,Zhai L,Yao S,Cao Y,Cao Y,Zhang X,Su J,Ge Y,Zhao R,Cheng C

    更新日期:2015-11-01 00:00:00

  • Shewanella submarina sp. nov., a gammaproteobacterium isolated from marine water.

    abstract::A curved-rod-shaped bacterium was isolated from a marine (100 m depth) water sample collected from Bay of Bengal, Visakhapatnam, India. Strain NIO-S14T, was Gram-stain-negative, motile and pale-yellow. NIO-S14T was able to grow aerobically and anaerobically and could utilize a number of organic substrates. Major fatty...

    journal_title:International journal of systematic and evolutionary microbiology

    pub_type: 杂志文章

    doi:10.1099/ijsem.0.003059

    authors: Sudha Rani P,Saini MK,Pinnaka AK,Sampath Kumar G,Kumar S,Vemuluri VR,Tanuku NRS

    更新日期:2019-01-01 00:00:00

  • Entomomonas moraniae gen. nov., sp. nov., a member of the family Pseudomonadaceae isolated from Asian honey bee gut, possesses a highly reduced genome.

    abstract::The honey bee gut microbiota contains many bacterial lineages that are specific to this ecosystem. Apis cerana, raised across the Asian continent, is of great significance to the maintenance and development of ecology and agriculture in Asia. Here, we report the isolation and characterization of strain QZS01T from the...

    journal_title:International journal of systematic and evolutionary microbiology

    pub_type: 杂志文章

    doi:10.1099/ijsem.0.003731

    authors: Wang J,Su Q,Zhang X,Li C,Luo S,Zhou X,Zheng H

    更新日期:2020-01-01 00:00:00

  • Haloarchaeobius salinus sp. nov., isolated from an inland salt lake, and emended description of the genus Haloarchaeobius.

    abstract::The halophilic archaeal strain, YC82(T), was isolated from Yuncheng salt lake in Shanxi, PR China. Cells from strain YC82(T) were Gram-stain negative, pleomorphic rods, which lysed in distilled water and formed light-red colonies on solid media. Strain YC82(T) grew at 25-50 °C (optimum 37 °C), in 1.4-4.8 M NaCl (optim...

    journal_title:International journal of systematic and evolutionary microbiology

    pub_type: 杂志文章

    doi:10.1099/ijs.0.000038

    authors: Yuan PP,Zhang WJ,Han D,Cui HL

    更新日期:2015-03-01 00:00:00

  • A multigene approach to phylogenetic analysis using the genus Mycobacterium as a model.

    abstract::Advances in DNA sequencing and the increasing number of sequences available in databases have greatly enhanced the bacterial identification process. Several species within the genus Mycobacterium cause serious human and animal diseases. In order to assess their relative positions in the evolutionary process, four gene...

    journal_title:International journal of systematic and evolutionary microbiology

    pub_type: 杂志文章

    doi:10.1099/ijs.0.63222-0

    authors: Devulder G,de Montclos MP,Flandrois JP

    更新日期:2005-01-01 00:00:00

  • Paenibacillus stellifer sp. nov., a cyclodextrin-producing species isolated from paperboard.

    abstract::The microflora isolated from food-packaging board is dominated by paenibacilli; a number of these micro-organisms have been characterized using a polyphasic approach. The highest 16S rRNA gene similarity was found between these isolates and Paenibacillus azotofixans ATCC 35681(T) (97.7 %). The main fatty acid of the p...

    journal_title:International journal of systematic and evolutionary microbiology

    pub_type: 杂志文章

    doi:10.1099/ijs.0.02277-0

    authors: Suominen I,Spröer C,Kämpfer P,Rainey FA,Lounatmaa K,Salkinoja-Salonen M

    更新日期:2003-09-01 00:00:00

  • Phylogenetic analysis identifies the 'megabacterium' of birds as a novel anamorphic ascomycetous yeast, Macrorhabdus ornithogaster gen. nov., sp. nov.

    abstract::An organism commonly referred to as 'megabacterium' colonizes the gastric isthmus of many species of birds. It is weakly gram-positive and periodic acid-Schiff-positive and stains with silver stains. Previous studies have shown that it has a nucleus and a cell wall similar to those seen in fungi. Calcofluor white M2R ...

    journal_title:International journal of systematic and evolutionary microbiology

    pub_type: 杂志文章

    doi:10.1099/ijs.0.02514-0

    authors: Tomaszewski EK,Logan KS,Snowden KF,Kurtzman CP,Phalen DN

    更新日期:2003-07-01 00:00:00

  • Fodinibius salinus gen. nov., sp. nov., a moderately halophilic bacterium isolated from a salt mine.

    abstract::A novel, moderately halophilic, rod-shaped bacterium, designated strain YIM D17(T), was isolated from a sample of sediment from a salt mine in Yunnan, south-western China. The taxonomy of strain YIM D17(T) was investigated using a polyphasic approach. Strain YIM D17(T) was Gram-stain-negative, strictly aerobic and non...

    journal_title:International journal of systematic and evolutionary microbiology

    pub_type: 杂志文章

    doi:10.1099/ijs.0.025502-0

    authors: Wang YX,Liu JH,Xiao W,Zhang XX,Li YQ,Lai YH,Ji KY,Wen ML,Cui XL

    更新日期:2012-02-01 00:00:00

  • Micromonospora sediminicola sp. nov., isolated from marine sediment.

    abstract::An actinomycete strain, designated strain SH2-13(T), was isolated from a marine sediment sample collected from the Andaman Sea of Thailand. Applying a polyphasic approach, the isolate was identified as a member of the genus Micromonospora using morphological and chemotaxonomic characteristics, including the presence o...

    journal_title:International journal of systematic and evolutionary microbiology

    pub_type: 杂志文章

    doi:10.1099/ijs.0.041103-0

    authors: Supong K,Suriyachadkun C,Tanasupawat S,Suwanborirux K,Pittayakhajonwut P,Kudo T,Thawai C

    更新日期:2013-02-01 00:00:00

  • Thermus arciformis sp. nov., a thermophilic species from a geothermal area.

    abstract::Two aerobic, Gram-negative, non-motile, non-sporulating, yellow-pigmented bacteria, strains TH92(T) and TH91, were isolated from a hot spring located in Laibin, Guangxi, in the south-eastern geothermal area of China. The isolates grew at 40-77 degrees C (optimally at 70 degrees C) and at pH 6.0-9.5 (optimally at pH 7....

    journal_title:International journal of systematic and evolutionary microbiology

    pub_type: 杂志文章

    doi:10.1099/ijs.0.007690-0

    authors: Zhang XQ,Ying Y,Ye Y,Xu XW,Zhu XF,Wu M

    更新日期:2010-04-01 00:00:00