Abstract:
:The gene co-expression analysis toolbox (GeneCAT) introduces several novel microarray data analyzing tools. First, the multigene co-expression analysis, combined with co-expressed gene networks, provides a more powerful data mining technique than standard, single-gene co-expression analysis. Second, the high-throughput Map-O-Matic tool matches co-expression pattern of multiple query genes to genes present in user-defined subdatabases, and can therefore be used for gene mapping in forward genetic screens. Third, Rosetta combines co-expression analysis with BLAST and can be used to find 'true' gene orthologs in the plant model organisms Arabidopsis thaliana and Hordeum vulgare (Barley). GeneCAT is equipped with expression data for the model plant A. thaliana, and first to introduce co-expression mining tools for the monocot Barley. GeneCAT is available at http://genecat.mpg.de.
journal_name
Nucleic Acids Resjournal_title
Nucleic acids researchauthors
Mutwil M,Obro J,Willats WG,Persson Sdoi
10.1093/nar/gkn292subject
Has Abstractpub_date
2008-07-01 00:00:00pages
W320-6issue
Web Server issueeissn
0305-1048issn
1362-4962pii
gkn292journal_volume
36pub_type
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