Abstract:
:The presence of the fungal pathogen, Botrytis cinerea, in the vineyard causes reductions in both quality and quantity of grapes and wine. Because proteins are involved in the foam stabilization of sparkling wines, we have undertaken, for the first time, a thorough proteomic analysis of two champagne base wines prepared with either healthy or botrytized Chardonnay grapes, using two-dimensional electrophoresis (2DE) coupled with immunodetection and tandem mass spectrometry. Most of the identified proteins were from grape origin: invertase and pathogenesis-related (PR) proteins. The disappearance of numerous grape proteins was observed in the botrytized wine, suggesting that they were probably degraded or even repressed or the result of a differential expression of grape proteins upon fungal infection. On the other hand, two pectinolytic enzymes secreted by B. cinerea were found in the botrytized wine.
journal_name
J Proteome Resjournal_title
Journal of proteome researchauthors
Cilindre C,Jégou S,Hovasse A,Schaeffer C,Castro AJ,Clément C,Van Dorsselaer A,Jeandet P,Marchal Rdoi
10.1021/pr070419psubject
Has Abstractpub_date
2008-03-01 00:00:00pages
1199-208issue
3eissn
1535-3893issn
1535-3907journal_volume
7pub_type
杂志文章abstract::Sensitive detection of molecular biomarkers in clinical samples is crucially important in disease diagnostics. This paper reports the development of an aptamer microarray platform combined with sol-gel technology to identify low-abundance targets in complex serum samples. Because of the nanoporous structure of the sol...
journal_title:Journal of proteome research
pub_type: 杂志文章
doi:10.1021/pr100300t
更新日期:2010-11-05 00:00:00
abstract::Hypoxia inducible factor (HIF)-2α protein expression in solid tumors promotes stem-like phenotype in cancer stem cells and increases tumorigenic potential in nonstem cancer cells. Recently, we have shown that HIF-1/2α gene expression is correlated to neuroblastoma (NB) poor survival and to undifferentiated tumor state...
journal_title:Journal of proteome research
pub_type: 杂志文章
doi:10.1021/acs.jproteome.6b00457
更新日期:2016-10-07 00:00:00
abstract::"Dry eye" is a multifactorial inflammatory disease affecting the ocular surface. Tear hyperosmolarity in dry eye contributes to inflammation and cell damage. Recent research efforts on dry eye have been directed toward biomarker discovery for diagnosis, response to treatment, and disease mechanisms. This study employe...
journal_title:Journal of proteome research
pub_type: 杂志文章
doi:10.1021/acs.jproteome.5b00443
更新日期:2015-09-04 00:00:00
abstract::Minimal hepatic encephalopathy (MHE) reduces quality of life of cirrhotic patients, predicts overt hepatic encephalopathy, and is associated with poor prognosis. We hypothesized that MHE arises once metabolic alterations derived from the liver reach a particular threshold. Our aim was to assess whether metabolic profi...
journal_title:Journal of proteome research
pub_type: 杂志文章
doi:10.1021/pr100486e
更新日期:2010-10-01 00:00:00
abstract::Cancers are initiated and developed from a small population of stem-like cells termed cancer stem cells (CSCs). There is heterogeneity among this CSC population that leads to multiple subpopulations with their own distinct biological features and protein expression. The protein expression and function may be impacted ...
journal_title:Journal of proteome research
pub_type: 杂志文章
doi:10.1021/acs.jproteome.6b00824
更新日期:2017-02-03 00:00:00
abstract::In this report, we describe an integrated fluidic platform composed of tandem affinity columns for the depletion of high-abundance proteins from human serum and on-line fractionation/concentration of medium- and low-abundance proteins by tandem immobilized metal-ion affinity chromatography (IMAC) columns and reversed ...
journal_title:Journal of proteome research
pub_type: 杂志文章
doi:10.1021/pr900399q
更新日期:2009-10-01 00:00:00
abstract::The use of matrix-assisted laser desorption ionization mass spectrometry (MALDI-MS) to acquire spectral profiles has become a common approach to detect proteomic biomarkers of disease. MALDI-MS signals may represent both intact proteins as well as proteolysis products. Liquid chromatography-tandem mass spectrometry (L...
journal_title:Journal of proteome research
pub_type: 杂志文章
doi:10.1021/pr050138m
更新日期:2005-09-01 00:00:00
abstract::Human plasma and serum proteins are subject to intrinsic proteolytic degradation both during and after blood collection. By monitoring peptides, we investigated the stability of plasma and serum samples and the effects of anticoagulants and protease inhibitors on the plasma samples. Serum and plasma were subjected to ...
journal_title:Journal of proteome research
pub_type: 杂志文章
doi:10.1021/pr060550h
更新日期:2007-05-01 00:00:00
abstract::Protein cleavage coupled with isotope dilution mass spectrometry (PC-IDMS) has the potential to provide the absolute concentration of a specific protein, or multiple proteins, in complex mixtures. However, PC-IDMS differs from standard IDMS since the internal standard is a different molecule than the analyte at the st...
journal_title:Journal of proteome research
pub_type: 杂志文章
doi:10.1021/pr034124x
更新日期:2004-05-01 00:00:00
abstract::Deficiency of the sulfide metabolizing protein ETHE1 is the cause of ethylmalonic encephalopathy (EE), an inherited and severe metabolic disorder. To study the molecular effects of EE, we performed a proteomics study on mitochondria from cultured patient fibroblast cells. Samples from six patients were analyzed and re...
journal_title:Journal of proteome research
pub_type: 杂志文章
doi:10.1021/pr101218d
更新日期:2011-05-06 00:00:00
abstract::POPX2 is a serine/threonine phosphatase belonging to the protein phosphatase 2C (PP2C) family that has been found to be elevated in invasive breast cancer cells. Silencing of POPX2 results in lower cell motility and invasiveness. The molecular mechanism of POPX2-regulated cell motility is not well understood. To ident...
journal_title:Journal of proteome research
pub_type: 杂志文章
doi:10.1021/pr301113c
更新日期:2013-06-07 00:00:00
abstract::Acute stress may trigger systemic biochemical and physiological changes in living organisms, leading to a rapid loss of homeostasis, which can be gradually reinstated by self-regulatory mechanisms and/or drug intervention strategy. However, such a sophisticated metabolic regulatory process has so far been poorly under...
journal_title:Journal of proteome research
pub_type: 杂志文章
doi:10.1021/pr070051w
更新日期:2007-09-01 00:00:00
abstract::After tissue or body fluid sampling, proteases and other protein-modifying enzymes can rapidly change composition of the proteome. As a direct consequence, analytical results will reflect a mix of in vivo proteome and ex vivo degradation products. Vital information about the presampling state may be destroyed or disto...
journal_title:Journal of proteome research
pub_type: 杂志文章
doi:10.1021/pr8006446
更新日期:2009-02-01 00:00:00
abstract::Sterols are membrane-bound isoprenoid lipids that are required for cell viability and growth. In plants, it is generally assumed that 3-hydroxy-3-methylglutaryl-CoA-reductase (HMGR) is a key element of their biosynthesis, but the molecular regulation of that pathway is largely unknown. In an attempt to identify regula...
journal_title:Journal of proteome research
pub_type: 杂志文章
doi:10.1021/pr201127u
更新日期:2012-02-03 00:00:00
abstract::Chronic kidney disease (CKD) has emerged as a major public health problem worldwide. It frequently progresses to end-stage renal disease, which is related to very high cost and mortality. Novel biomarkers can provide insight into the novel mechanism, facilitate early detection, and monitor progression of CKD and its r...
journal_title:Journal of proteome research
pub_type: 杂志文章
doi:10.1021/acs.jproteome.6b00583
更新日期:2016-10-07 00:00:00
abstract::Detergents are indispensable solubilizing agents in the purification and analysis of membrane proteins. For mass spectrometric identification of proteins, it is essential that detergents are removed prior to analysis, necessitating an in-gel digestion step. Here, we report a procedure that allows use of detergents and...
journal_title:Journal of proteome research
pub_type: 杂志文章
doi:10.1021/pr800412j
更新日期:2008-11-01 00:00:00
abstract::A major source of intestinal metabolites results from both host and microbial processing of dietary nutrients. (1)H NMR-based metabolic profiling of mouse feces was carried out over time in different microbiome mouse models, including conventional (n = 9), conventionalized (n = 10), and "humanized" gnotobiotic mice in...
journal_title:Journal of proteome research
pub_type: 杂志文章
doi:10.1021/pr100554m
更新日期:2010-10-01 00:00:00
abstract::Tryptic digestion of biotinylated Lys-C peptides followed by affinity chromatography allows the selective isolation of lysine-free tryptic peptides delimited by arginine residues (RRnK peptides). In silico analysis revealed that RRnK peptides represent 87% of the whole proteomes and their specific isolation simplifies...
journal_title:Journal of proteome research
pub_type: 杂志文章
doi:10.1021/pr060003w
更新日期:2006-05-01 00:00:00
abstract::Temperature is one of the most critical parameters for yeast growth, and it has deep consequences in many industrial processes where yeast is involved. Nevertheless, the metabolic changes required to accommodate yeast cells at high or low temperatures are still poorly understood. In this work, the ultimate responses o...
journal_title:Journal of proteome research
pub_type: 杂志文章
doi:10.1021/acs.jproteome.7b00921
更新日期:2018-06-01 00:00:00
abstract::Today's highly accurate spectra provided by modern tandem mass spectrometers offer considerable advantages for the analysis of proteomic samples of increased complexity. Among other factors, the quantity of reliably identified peptides is considerably influenced by the peptide identification algorithm. While most wide...
journal_title:Journal of proteome research
pub_type: 杂志文章
doi:10.1021/pr500202e
更新日期:2014-08-01 00:00:00
abstract::We analyzed a unique rice (Oryza sativa L.) blast lesion mimic (blm) mutant for differentially expressed proteins in leaves of one- and two-week-old seedlings manifesting the lesion mimic phenotype. Gel-based one- and two-dimensional electrophoresis (1- and 2-DGE) was performed using leaves (blm and wild-type, WT) bef...
journal_title:Journal of proteome research
pub_type: 杂志文章
doi:10.1021/pr060092c
更新日期:2006-10-01 00:00:00
abstract::Protein-protein control recognition remains a huge challenge, and its development depends on understanding the chemical and biological mechanisms by which these interactions occur. Here we describe a protein-protein control recognition technique based on the dominant electrostatic interactions occurring between the pr...
journal_title:Journal of proteome research
pub_type: 杂志文章
doi:10.1021/pr100027k
更新日期:2010-06-04 00:00:00
abstract::Acinetobacter baumannii causes severe infections in compromised patients. We combined SDS-PAGE, two-dimensional gel electrophoresis and mass spectrometry (LC-MS/MS and MALDI-TOF) to separate and characterize the proteins of the cell envelope of this bacterium. In total, 135 proteins (inner and outer membrane proteins)...
journal_title:Journal of proteome research
pub_type: 杂志文章
doi:10.1021/pr060372s
更新日期:2006-12-01 00:00:00
abstract::We report the use of chemical derivatization with MALDI-MS/MS analysis for de novo sequence analysis. Using three frequently used homology-based search algorithms, we were able to identify more than 40 proteins from banana, a nonmodel plant with unsequenced genome. Furthermore, this approach allowed the identification...
journal_title:Journal of proteome research
pub_type: 杂志文章
doi:10.1021/pr0601943
更新日期:2007-01-01 00:00:00
abstract::Although tandem mass spectrometry (MS/MS) has become an integral part of proteomics, intensity patterns in MS/MS spectra are rarely weighted heavily in most widely used algorithms because they are not yet fully understood. Here a knowledge mining approach is demonstrated to discover fragmentation intensity patterns an...
journal_title:Journal of proteome research
pub_type: 杂志文章
doi:10.1021/pr070106u
更新日期:2008-01-01 00:00:00
abstract::Bacillus weihenstephanensis is a subspecies of the Bacillus cereus sensu lato group of spore-forming bacteria known to cause food spoilage or food poisoning. The key distinguishing phenotype of B. weihenstephanensis is its ability to grow below 7 °C or, from a food safety perspective, to grow and potentially produce t...
journal_title:Journal of proteome research
pub_type: 杂志文章
doi:10.1021/pr501307t
更新日期:2015-05-01 00:00:00
abstract::Workflows for large-scale (MS)-based shotgun proteomics can potentially lead to costly errors in the form of incorrect peptide-spectrum matches (PSMs). To improve the robustness of these workflows, we have investigated the use of the precursor mass discrepancy (PMD) to detect and filter potentially false PSMs that hav...
journal_title:Journal of proteome research
pub_type: 杂志文章
doi:10.1021/acs.jproteome.9b00478
更新日期:2020-01-03 00:00:00
abstract::Ethylene has been hypothesised to be a regulator of root nodule development in legumes, but its molecular mechanisms of action remain unclear. The skl mutant is an ethylene-insensitive legume mutant showing a hypernodulation phenotype when inoculated with its symbiont Sinorhizobium meliloti. We used the skl mutant to ...
journal_title:Journal of proteome research
pub_type: 杂志文章
doi:10.1021/pr0602646
更新日期:2006-11-01 00:00:00
abstract::Vascular endothelial growth factor receptor-2 (VEGFR-2) is an important receptor tyrosine kinase (RTK) that plays critical roles in both physiologic and pathologic angiogenesis. The extracellular domain of VEGFR-2 is composed of seven immunoglobulin-like domains, each with multiple potential N-glycosylation sites (seq...
journal_title:Journal of proteome research
pub_type: 杂志文章
doi:10.1021/acs.jproteome.6b00738
更新日期:2017-02-03 00:00:00
abstract::Antibodies are a primary research tool for a diverse range of experiments in biology, from development to pathology. Their utility is derived from their ability to specifically identify proteins at a high level of sensitivity. This diversity of experimental requirements stretches the capabilities of these key research...
journal_title:Journal of proteome research
pub_type: 杂志文章
doi:10.1021/pr100029f
更新日期:2010-07-02 00:00:00