Mechanical properties of cardiac titin's N2B-region by single-molecule atomic force spectroscopy.

Abstract:

:Titin is a giant protein responsible for passive-tension generation in muscle sarcomeres. Here, we used single-molecule AFM force spectroscopy to investigate the mechanical characteristics of a recombinant construct from the human cardiac-specific N2B-region, which harbors a 572-residue unique sequence flanked by two immunoglobulin (Ig) domains on either side. Force-extension curves of the N2B-construct revealed mean unfolding forces for the Ig-domains similar to those of a recombinant fragment from the distal Ig-region in titin (I91-98). The mean contour length of the N2B-unique sequence was 120 nm, but there was a bimodal distribution centered at approximately 95 nm (major peak) and 180 nm (minor peak). These values are lower than expected if the N2B-unique sequence were a permanently unfolded entropic spring, but are consistent with the approximately 100 nm maximum extension of that segment measured in isolated stretched cardiomyofibrils. A contour-length below 200 nm would be reasonable, however, if the N2B-unique sequence were stabilized by a disulphide bridge, as suggested by several disulphide connectivity prediction algorithms. Since the N2B-unique sequence can be phosphorylated by protein kinase A (PKA), which lowers titin-based stiffness, we studied whether addition of PKA (+ATP) affects the mechanical properties of the N2B-construct, but found no changes. The softening effect of PKA on N2B-titin may require specific conditions/factors present inside the cardiomyocytes.

journal_name

J Struct Biol

authors

Leake MC,Grützner A,Krüger M,Linke WA

doi

10.1016/j.jsb.2006.02.017

subject

Has Abstract

pub_date

2006-08-01 00:00:00

pages

263-72

issue

2

eissn

1047-8477

issn

1095-8657

pii

S1047-8477(06)00109-2

journal_volume

155

pub_type

杂志文章
  • Type I collagen-phosphophoryn interactions: specificity of the monomer-monomer binding.

    abstract::It has been postulated that phosphophoryn (PP) molecules bind specifically to type I collagen fibrils as the key event in inducing matrix mineralization in dentin. The nature and specificity of the collagen molecule-PP interaction has been examined by rotary shadowing-electron microscopy of mixtures of native, monomer...

    journal_title:Journal of structural biology

    pub_type: 杂志文章

    doi:10.1006/jsbi.1998.4025

    authors: Dahl T,Sabsay B,Veis A

    更新日期:1998-10-01 00:00:00

  • Interactions of the α-subunits of heterotrimeric G-proteins with GPCRs, effectors and RGS proteins: a critical review and analysis of interacting surfaces, conformational shifts, structural diversity and electrostatic potentials.

    abstract::G-protein coupled receptors (GPCRs) are one of the largest families of membrane receptors in eukaryotes. Heterotrimeric G-proteins, composed of α, β and γ subunits, are important molecular switches in the mediation of GPCR signaling. Receptor stimulation after the binding of a suitable ligand leads to G-protein hetero...

    journal_title:Journal of structural biology

    pub_type: 杂志文章

    doi:10.1016/j.jsb.2013.03.004

    authors: Baltoumas FA,Theodoropoulou MC,Hamodrakas SJ

    更新日期:2013-06-01 00:00:00

  • Comparative spatial localization of protein-A-tagged and authentic yeast nuclear pore complex proteins by immunogold electron microscopy.

    abstract::The nuclear pore complex (NPC) mediates protein and RNP import in and RNA and RNP export out of the nucleus of eukaryotic cells. Due to its genetic tractability, yeast offers a versatile system for investigating the chemical composition and molecular architecture of the NPC. In this context, protein A tagging is a com...

    journal_title:Journal of structural biology

    pub_type: 杂志文章

    doi:10.1006/jsbi.2000.4223

    authors: Fahrenkrog B,Aris JP,Hurt EC,Panté N,Aebi U

    更新日期:2000-04-01 00:00:00

  • The three-dimensional structure of trypsin-treated Staphylococcus aureus alpha-toxin.

    abstract::Trypsin treatment of staphylococcal alpha-toxin cleaves the molecule into two roughly equally sized parts, which results in inactivation of the toxin. Tetragonal arrays of oligomers, closely resembling the native ones, can however be formed on lipid layers. From tilted views of negatively stained crystals a 3D structu...

    journal_title:Journal of structural biology

    pub_type: 杂志文章

    doi:10.1016/1047-8477(92)90024-5

    authors: Olofsson A,Kavéus U,Thelestam M,Hebert H

    更新日期:1992-05-01 00:00:00

  • Statistical modeling and removal of lipid membrane projections for cryo-EM structure determination of reconstituted membrane proteins.

    abstract::This paper describes steps in the single-particle cryo-EM 3D structure determination of membrane proteins in their membrane environment. Using images of the Kv1.2 potassium-channel complex reconstituted into lipid vesicles, we describe procedures for the merging of focal-pairs of exposures and the removal of the vesic...

    journal_title:Journal of structural biology

    pub_type: 杂志文章

    doi:10.1016/j.jsb.2016.01.012

    authors: Jensen KH,Brandt SS,Shigematsu H,Sigworth FJ

    更新日期:2016-04-01 00:00:00

  • Change in single cystathionine β-synthase domain-containing protein from a bent to flat conformation upon adenosine monophosphate binding.

    abstract::Cystathionine β-synthase (CBS) domains are small intracellular modules that can act as binding domains for adenosine derivatives, and they may regulate the activity of associated enzymes or other functional domains. Among these, the single CBS domain-containing proteins, CBSXs, from Arabidopsis thaliana, have recently...

    journal_title:Journal of structural biology

    pub_type: 杂志文章

    doi:10.1016/j.jsb.2013.04.013

    authors: Jeong BC,Park SH,Yoo KS,Shin JS,Song HK

    更新日期:2013-07-01 00:00:00

  • In situ detection of specific gene expression during and immediately after transcription at electron microscopic level.

    abstract::In situ hybridization (ISH) is a widely applied technique used for visualizing specific nucleic acid sequences at chromosomal, cytologic, and histologic levels. It sometimes fails, however, to demonstrate precise cell identity, early stages of gene expression and variants of alternative splicing because of its limited...

    journal_title:Journal of structural biology

    pub_type: 杂志文章

    doi:10.1016/j.jsb.2005.09.010

    authors: Kitazawa S,Kitazawa R

    更新日期:2006-01-01 00:00:00

  • From colloidal nanoparticles to a single crystal: new insights into the formation of nacre's aragonite tablets.

    abstract::Nacre has long served as a model for understanding the biomineralization mechanism and designing bio-inspired materials. However, its basic building blocks, the aragonite tablets, are still under debate in terms of their fine structure at the nanoscale and corresponding formation mechanism. Here, using a field emissio...

    journal_title:Journal of structural biology

    pub_type: 杂志文章

    doi:10.1016/j.jsb.2013.01.010

    authors: Zhang G,Xu J

    更新日期:2013-04-01 00:00:00

  • Radial averages of astigmatic TEM images.

    abstract::The Contrast Transfer Function (CTF) of an image, which modulates images taken from a Transmission Electron Microscope (TEM), is usually determined from the radial average of the power spectrum of the image (Frank, J., Three-dimensional Electron Microscopy of Macromolecular Assemblies, Oxford University Press, Oxford,...

    journal_title:Journal of structural biology

    pub_type: 杂志文章

    doi:10.1016/j.jsb.2008.06.012

    authors: Fernando KV

    更新日期:2008-10-01 00:00:00

  • Exploiting desktop supercomputing for three-dimensional electron microscopy reconstructions using ART with blobs.

    abstract::Three-dimensional electron microscopy allows direct visualization of biological macromolecules close to their native state. The high impact of this technique in the structural biology field is highly correlated with the development of new image processing algorithms. In order to achieve subnanometer resolution, the si...

    journal_title:Journal of structural biology

    pub_type: 杂志文章

    doi:10.1016/j.jsb.2008.09.009

    authors: Bilbao-Castro JR,Marabini R,Sorzano CO,García I,Carazo JM,Fernández JJ

    更新日期:2009-01-01 00:00:00

  • Single versus dual-axis cryo-electron tomography of microtubules assembled in vitro: limits and perspectives.

    abstract::Single-axis cryo-electron tomography of vitrified specimens has become a method of choice to reconstruct in three dimensions macromolecular assemblies in their cellular context or prepared from purified components. Here, we asked how a dual-axis acquisition scheme would improve three-dimensional reconstructions of mic...

    journal_title:Journal of structural biology

    pub_type: 杂志文章

    doi:10.1016/j.jsb.2012.11.004

    authors: Guesdon A,Blestel S,Kervrann C,Chrétien D

    更新日期:2013-02-01 00:00:00

  • Applications of a slow-scan CCD camera in protein electron crystallography.

    abstract::A Gatan 1024 x 1024 slow-scan charge-coupled device (CCD) camera has been interfaced to a JEOL4000EX electron cryomicroscope and explored for its usefulness in the electron crystallographic analysis of thin, glucose-embedded crystals of crotoxin complex kept at -125 degrees C. We show that the camera allows for an on-...

    journal_title:Journal of structural biology

    pub_type: 杂志文章

    doi:10.1006/jsbi.1994.1029

    authors: Brink J,Chiu W

    更新日期:1994-07-01 00:00:00

  • Implementation of a cryo-electron tomography tilt-scheme optimized for high resolution subtomogram averaging.

    abstract::Cryo-electron tomography (cryoET) allows 3D structural information to be obtained from cells and other biological samples in their close-to-native state. In combination with subtomogram averaging, detailed structures of repeating features can be resolved. CryoET data is collected as a series of images of the sample fr...

    journal_title:Journal of structural biology

    pub_type: 杂志文章

    doi:10.1016/j.jsb.2016.06.007

    authors: Hagen WJH,Wan W,Briggs JAG

    更新日期:2017-02-01 00:00:00

  • Accurate determination of local defocus and specimen tilt in electron microscopy.

    abstract::Accurate knowledge of defocus and tilt parameters is essential for the determination of three-dimensional protein structures at high resolution using electron microscopy. We present two computer programs, CTFFIND3 and CTFTILT, which determine defocus parameters from images of untilted specimens, as well as defocus and...

    journal_title:Journal of structural biology

    pub_type: 杂志文章

    doi:10.1016/s1047-8477(03)00069-8

    authors: Mindell JA,Grigorieff N

    更新日期:2003-06-01 00:00:00

  • A near atomic resolution structure of a Melanocarpus albomyces laccase.

    abstract::We have solved a crystal structure from Melanocarpus albomyces laccase expressed in the filamentous fungus Trichoderma reesei (rMaL) at 1.3A resolution by using synchrotron radiation at 100K. At the moment, this is the highest resolution that has been attained for any multicopper oxidase. The present structure confirm...

    journal_title:Journal of structural biology

    pub_type: 杂志文章

    doi:10.1016/j.jsb.2007.12.003

    authors: Hakulinen N,Andberg M,Kallio J,Koivula A,Kruus K,Rouvinen J

    更新日期:2008-04-01 00:00:00

  • The structure of a COPII tubule.

    abstract::Nearly a third of all eukaryotic proteins are transported from the ER to the Golgi apparatus through the secretory pathway using COPII coated vesicles. Evidence suggests that this transport occurs via 500-900 Å vesicles that bud from the ER membrane. It has been shown that procollagen molecules utilize the COPII prote...

    journal_title:Journal of structural biology

    pub_type: 杂志文章

    doi:10.1016/j.jsb.2010.09.002

    authors: O'Donnell J,Maddox K,Stagg S

    更新日期:2011-02-01 00:00:00

  • How does osteocalcin lacking γ-glutamic groups affect biomimetic apatite formation and what can we say about its structure in mineral-bound form?

    abstract::Non-collagenous proteins such as osteocalcin function as regulators of the mineralization process in bone. Osteocalcin undergoes post-translational modification adding an extra carboxylate group on three of its glutamate residues to enhance interaction with bone mineral. In this work, we examine regulation of biomimet...

    journal_title:Journal of structural biology

    pub_type: 杂志文章

    doi:10.1016/j.jsb.2019.04.014

    authors: Iline-Vul T,Kulpanovich A,Nadav-Tsubery M,Semionov A,Keinan-Adamsky K,Goobes G

    更新日期:2019-08-01 00:00:00

  • Image segmentation for automatic particle identification in electron micrographs based on hidden Markov random field models and expectation maximization.

    abstract::Three-dimensional reconstruction of large macromolecules like viruses at resolutions below 10 A requires a large set of projection images. Several automatic and semi-automatic particle detection algorithms have been developed along the years. Here we present a general technique designed to automatically identify the p...

    journal_title:Journal of structural biology

    pub_type: 杂志文章

    doi:10.1016/j.jsb.2003.11.028

    authors: Singh V,Marinescu DC,Baker TS

    更新日期:2004-01-01 00:00:00

  • A high-throughput strategy to screen 2D crystallization trials of membrane proteins.

    abstract::Electron microscopy of two-dimensional (2D) crystals has demonstrated potential for structure determination of membrane proteins. Technical limitations in large-scale crystallization screens have, however, prevented a major breakthrough in the routine application of this technology. Dialysis is generally used for dete...

    journal_title:Journal of structural biology

    pub_type: 杂志文章

    doi:10.1016/j.jsb.2007.09.003

    authors: Vink M,Derr K,Love J,Stokes DL,Ubarretxena-Belandia I

    更新日期:2007-12-01 00:00:00

  • Hybrid fluorescence and electron cryo-microscopy for simultaneous electron and photon imaging.

    abstract::Integration of fluorescence light and transmission electron microscopy into the same device would represent an important advance in correlative microscopy, which traditionally involves two separate microscopes for imaging. To achieve such integration, the primary technical challenge that must be solved regards how to ...

    journal_title:Journal of structural biology

    pub_type: 杂志文章

    doi:10.1016/j.jsb.2013.10.018

    authors: Iijima H,Fukuda Y,Arai Y,Terakawa S,Yamamoto N,Nagayama K

    更新日期:2014-01-01 00:00:00

  • Unsupervised mitochondria segmentation using recursive spectral clustering and adaptive similarity models.

    abstract::The unsupervised segmentation method proposed in the current study follows the evolutional ability of human vision to extrapolate significant structures in an image. In this work we adopt the perceptual grouping strategy by selecting the spectral clustering framework, which is known to capture perceptual organization ...

    journal_title:Journal of structural biology

    pub_type: 杂志文章

    doi:10.1016/j.jsb.2013.10.013

    authors: Dietlmeier J,Ghita O,Duessmann H,Prehn JH,Whelan PF

    更新日期:2013-12-01 00:00:00

  • Structural ensemble and biological activity of DciA intrinsically disordered region.

    abstract::DciA is a newly discovered bacterial protein involved in loading the replicative helicase DnaB onto DNA at the initiation step of chromosome replication. Its three-dimensional structure is composed of a folded N-terminal domain (residues 1-111) resembling K Homology domains and a long disordered C-terminal tail (resid...

    journal_title:Journal of structural biology

    pub_type: 杂志文章

    doi:10.1016/j.jsb.2020.107573

    authors: Chan-Yao-Chong M,Marsin S,Quevillon-Cheruel S,Durand D,Ha-Duong T

    更新日期:2020-10-01 00:00:00

  • Crystallization and 1.1-A diffraction of chorismate lyase from Escherichia coli.

    abstract::Chorismate pathway enzymes are important as producers of nonnucleotide aromatic compounds. The enzyme chorismate lyase from Escherichia coli has been crystallized in four distinct forms, three of which have been characterized by X-ray diffraction. Despite widespread screening, all four crystal forms grow from the same...

    journal_title:Journal of structural biology

    pub_type: 杂志文章

    doi:10.1006/jsbi.1999.4205

    authors: Stover C,Mayhew MP,Holden MJ,Howard A,Gallagher DT

    更新日期:2000-02-01 00:00:00

  • Intracellular calcium phosphate deposits contribute to transcellular calcium transport within the hepatopancreas of Porcellio scaber.

    abstract::Like in most Crustacea, the cuticle of terrestrial isopods is hardened by a calcareous mineral phase. This rigid cuticle is frequently shed during a process called moulting. To reduce calcium loss, Porcellio scaber eats the shed cuticle, the exuviae, and absorb the calcium from it through large tubular diverticula of ...

    journal_title:Journal of structural biology

    pub_type: 杂志文章

    doi:10.1016/j.jsb.2020.107613

    authors: Rupp U,Walther P,Ziegler A

    更新日期:2020-11-01 00:00:00

  • A link between sequence conservation and domain motion within the AAA+ family.

    abstract::The AAA+ family of proteins play fundamental roles in all three kingdoms of life. It is thought that they act as molecular chaperones in aiding the assembly or disassembly of proteins or protein complexes. Recent structural studies on a number of AAA+ family proteins have revealed that they share similar structural el...

    journal_title:Journal of structural biology

    pub_type: 杂志文章

    doi:10.1016/j.jsb.2003.11.022

    authors: Smith GR,Contreras-Moreira B,Zhang X,Bates PA

    更新日期:2004-04-01 00:00:00

  • Formation of biomineral iron oxides compounds in a Fe hyperaccumulator plant: Imperata cylindrica (L.) P. Beauv.

    abstract::We report a detailed work of composition and location of naturally formed iron biominerals in plant cells tissues grown in iron rich environments as Imperata cylindrica. This perennial grass grows on the Tinto River banks (Iberian Pyritic Belt) in an extreme acidic ecosystem (pH∼2.3) with high concentration of dissolv...

    journal_title:Journal of structural biology

    pub_type: 杂志文章

    doi:10.1016/j.jsb.2015.11.005

    authors: Fuente V,Rufo L,Juárez BH,Menéndez N,García-Hernández M,Salas-Colera E,Espinosa A

    更新日期:2016-01-01 00:00:00

  • High-resolution structures of annexin A5 in a two-dimensional array.

    abstract::Annexins are soluble cytosolic proteins that bind to cell membranes. Annexin A5 self-assembles into a two-dimensional (2D) array and prevents cell rupture by attaching to damaged membranes. However, this process is not fully understood at the molecular level. In this study, we determined the crystal structures of anne...

    journal_title:Journal of structural biology

    pub_type: 杂志文章

    doi:10.1016/j.jsb.2019.10.003

    authors: Hong S,Na S,Kim OH,Jeong S,Oh BC,Ha NC

    更新日期:2020-01-01 00:00:00

  • Forming nacreous layer of the shells of the bivalves Atrina rigida and Pinctada margaritifera: an environmental- and cryo-scanning electron microscopy study.

    abstract::A key to understanding control over mineral formation in mollusk shells is the microenvironment inside the pre-formed 3-dimensional organic matrix framework where mineral forms. Much of what is known about nacre formation is from observations of the mature tissue. Although these studies have elucidated several importa...

    journal_title:Journal of structural biology

    pub_type: 杂志文章

    doi:10.1016/j.jsb.2008.01.008

    authors: Nudelman F,Shimoni E,Klein E,Rousseau M,Bourrat X,Lopez E,Addadi L,Weiner S

    更新日期:2008-05-01 00:00:00

  • Structural insights of key enzymes into therapeutic intervention against SARS-CoV-2.

    abstract::COVID-19 pandemic, caused by SARS-CoV-2, has drastically affected human health all over the world. After the emergence of the pandemic the major focus of efforts to attenuate the infection has been on repurposing the already approved drugs to treat COVID-19 adopting a fast-track strategy. However, to date a specific r...

    journal_title:Journal of structural biology

    pub_type: 杂志文章

    doi:10.1016/j.jsb.2020.107690

    authors: Shahid M,Shahzad-Ul-Hussan S

    更新日期:2020-12-29 00:00:00

  • Description and comparison of algorithms for correcting anisotropic magnification in cryo-EM images.

    abstract::Single particle electron cryomicroscopy (cryo-EM) allows for structures of proteins and protein complexes to be determined from images of non-crystalline specimens. Cryo-EM data analysis requires electron microscope images of randomly oriented ice-embedded protein particles to be rotated and translated to allow for co...

    journal_title:Journal of structural biology

    pub_type: 杂志文章

    doi:10.1016/j.jsb.2015.06.014

    authors: Zhao J,Brubaker MA,Benlekbir S,Rubinstein JL

    更新日期:2015-11-01 00:00:00