Nonlinear multivariate analysis of neurophysiological signals.

Abstract:

:Multivariate time series analysis is extensively used in neurophysiology with the aim of studying the relationship between simultaneously recorded signals. Recently, advances on information theory and nonlinear dynamical systems theory have allowed the study of various types of synchronization from time series. In this work, we first describe the multivariate linear methods most commonly used in neurophysiology and show that they can be extended to assess the existence of nonlinear interdependence between signals. We then review the concepts of entropy and mutual information followed by a detailed description of nonlinear methods based on the concepts of phase synchronization, generalized synchronization and event synchronization. In all cases, we show how to apply these methods to study different kinds of neurophysiological data. Finally, we illustrate the use of multivariate surrogate data test for the assessment of the strength (strong or weak) and the type (linear or nonlinear) of interdependence between neurophysiological signals.

journal_name

Prog Neurobiol

journal_title

Progress in neurobiology

authors

Pereda E,Quiroga RQ,Bhattacharya J

doi

10.1016/j.pneurobio.2005.10.003

keywords:

subject

Has Abstract

pub_date

2005-09-01 00:00:00

pages

1-37

issue

1-2

eissn

0301-0082

issn

1873-5118

pii

S0301-0082(05)00119-X

journal_volume

77

pub_type

杂志文章,评审
  • The art of lineage tracing: From worm to human.

    abstract::Reconstructing the genealogy of every cell that makes up an organism remains a long-standing challenge in developmental biology. Besides its relevance for understanding the mechanisms underlying normal and pathological development, resolving the lineage origin of cell types will be crucial to create these types on-dem...

    journal_title:Progress in neurobiology

    pub_type: 杂志文章,评审

    doi:10.1016/j.pneurobio.2020.101966

    authors: Garcia-Marques J,Espinosa-Medina I,Lee T

    更新日期:2020-11-26 00:00:00

  • Somatosensory evoked potentials in man: differentiation of spinal pathways responsible for conduction from the forelimb vs hindlimb.

    abstract::This review suggests that a previously unrecognized spinal cord pathway may be of major importance in the conduction of the somatosensory evoked potential (SEP) from the lower limb in Man. The nerve fiber type activated by a "typical" peripheral nerve stimulus used in studying the SEP will activate the posterior tibia...

    journal_title:Progress in neurobiology

    pub_type: 杂志文章,评审

    doi:10.1016/0301-0082(85)90021-8

    authors: York DH

    更新日期:1985-01-01 00:00:00

  • Cellular and molecular mechanisms of epilepsy in the human brain.

    abstract::Animal models have provided invaluable data for identifying the pathogenesis of epileptic disorders. Clearly, the relevance of these experimental findings would be strengthened by the demonstration that similar fundamental mechanisms are at work in the human epileptic brain. Epilepsy surgery has indeed opened the poss...

    journal_title:Progress in neurobiology

    pub_type: 杂志文章,评审

    doi:10.1016/j.pneurobio.2005.09.006

    authors: Avoli M,Louvel J,Pumain R,Köhling R

    更新日期:2005-10-01 00:00:00

  • Preproglucagon derived peptides GLP-1, GLP-2 and oxyntomodulin in the CNS: role of peripherally secreted and centrally produced peptides.

    abstract::The scientific understanding of preproglucagon derived peptides has provided people with type 2 diabetes with two novel classes of glucose lowering agents, the dipeptidyl peptidase IV (DPP-IV) inhibitors and GLP-1 receptor agonists. For the scientists, the novel GLP-1 agonists, and DPP-IV inhibitors have evolved as us...

    journal_title:Progress in neurobiology

    pub_type: 杂志文章,评审

    doi:10.1016/j.pneurobio.2010.07.003

    authors: Vrang N,Larsen PJ

    更新日期:2010-11-01 00:00:00

  • Structure and function of amyloid in Alzheimer's disease.

    abstract::This review is focused on the structure and function of Alzheimer's amyloid deposits. Amyloid formation is a process in which normal well-folded cellular proteins undergo a self-assembly process that leads to the formation of large and ordered protein structures. Amyloid deposition, oligomerization, and higher order p...

    journal_title:Progress in neurobiology

    pub_type: 杂志文章,评审

    doi:10.1016/j.pneurobio.2004.10.004

    authors: Morgan C,Colombres M,Nuñez MT,Inestrosa NC

    更新日期:2004-12-01 00:00:00

  • Implication of cysteine proteases calpain, cathepsin and caspase in ischemic neuronal death of primates.

    abstract::Although more than 8000 papers of apoptosis are published annually, there are very few reports concerning necrosis in the past few years. A number of recent studies using lower species animals have suggested that the cornu Ammonis (CA) 1 neuronal death after brief global cerebral ischemia occurs by apoptosis, an activ...

    journal_title:Progress in neurobiology

    pub_type: 杂志文章,评审

    doi:10.1016/s0301-0082(00)00006-x

    authors: Yamashima T

    更新日期:2000-10-01 00:00:00

  • Connection between inflammatory processes and transmittor function-Modulatory effects of interleukin-1.

    abstract::Cells in the nervous system can respond to different kinds of stress, e.g. injury, with production and release of inflammatory molecules, including cytokines. One of the most important proinflammatory cytokines is interleukin-1, affecting most organs of the body. The high constitutive expression of interleukin-1 in th...

    journal_title:Progress in neurobiology

    pub_type: 杂志文章,评审

    doi:10.1016/j.pneurobio.2009.10.015

    authors: Spulber S,Schultzberg M

    更新日期:2010-02-09 00:00:00

  • The concept of a calcium sensor in transmitter release.

    abstract::The discovery was made in the 1940s that calcium is required for transmitter release at synapses, raising the question of the identity of the sensor molecule upon which this calcium acts. Subsequently it was shown in the 1960s that this calcium acts on the inside of the nerve terminal. The channels which mediate the i...

    journal_title:Progress in neurobiology

    pub_type: 历史文章,杂志文章,评审

    doi:10.1016/s0301-0082(99)00004-0

    authors: Bennett MR

    更新日期:1999-10-01 00:00:00

  • And yet it moves: Recovery of volitional control after spinal cord injury.

    abstract::Preclinical and clinical neurophysiological and neurorehabilitation research has generated rather surprising levels of recovery of volitional sensory-motor function in persons with chronic motor paralysis following a spinal cord injury. The key factor in this recovery is largely activity-dependent plasticity of spinal...

    journal_title:Progress in neurobiology

    pub_type: 杂志文章,评审

    doi:10.1016/j.pneurobio.2017.10.004

    authors: Taccola G,Sayenko D,Gad P,Gerasimenko Y,Edgerton VR

    更新日期:2018-01-01 00:00:00

  • Intrinsic primary afferent neurons and nerve circuits within the intestine.

    abstract::Intrinsic primary afferent neurons (IPANs) of the enteric nervous system are quite different from all other peripheral neurons. The IPANs are transducers of physiological stimuli, including movement of the villi or distortion of the mucosa, contraction of intestinal muscle and changes in the chemistry of the contents ...

    journal_title:Progress in neurobiology

    pub_type: 杂志文章,评审

    doi:10.1016/j.pneurobio.2003.12.004

    authors: Furness JB,Jones C,Nurgali K,Clerc N

    更新日期:2004-02-01 00:00:00

  • Neurotrophic activity of a homeobox peptide.

    abstract::Homeoproteins are well known for their role in defining the shape of organs during early development. The late expression of some homeogenes in the nervous system suggests that they might have other, additional functions, possibly in neurite growth and target recognition. The 60 amino acid-long peptide corresponding t...

    journal_title:Progress in neurobiology

    pub_type: 杂志文章

    doi:10.1016/0301-0082(94)90070-1

    authors: Joliot A,Le Roux I,Volovitch M,Bloch-Gallego E,Prochiantz A

    更新日期:1994-02-01 00:00:00

  • The functional role of the subthalamic nucleus in cognitive and limbic circuits.

    abstract::Once it was believed that the subthalamic nucleus (STN) was no more than a relay station serving as a "gate" for ascending basal ganglia-thalamocortical circuits. Nowadays, the STN is considered to be one of the main regulators of motor function related to the basal ganglia. The role of the STN in the regulation of as...

    journal_title:Progress in neurobiology

    pub_type: 杂志文章,评审

    doi:10.1016/j.pneurobio.2005.09.005

    authors: Temel Y,Blokland A,Steinbusch HW,Visser-Vandewalle V

    更新日期:2005-08-01 00:00:00

  • Olfactory ensheathing cells: biology in neural development and regeneration.

    abstract::Olfactory ensheathing cells (OECs) constitute a unique population of glia that accompany and ensheath the primary olfactory axons. They are thought to be critical for spontaneous growth of olfactory axons within the developing and adult olfactory nervous system, and have recently emerged as potential candidates for ce...

    journal_title:Progress in neurobiology

    pub_type: 杂志文章,评审

    doi:10.1016/j.pneurobio.2010.08.008

    authors: Su Z,He C

    更新日期:2010-12-01 00:00:00

  • ALS: A bucket of genes, environment, metabolism and unknown ingredients.

    abstract::The scientific scenario of amyotrophic lateral sclerosis (ALS) has dramatically changed since TDP-43 aggregates were discovered in 2006 as the main component of the neuronal inclusions seen in the disease, and more recently, when the implication of C9ORF72 expansion in familial and sporadic cases of ALS and frontotemp...

    journal_title:Progress in neurobiology

    pub_type: 杂志文章,评审

    doi:10.1016/j.pneurobio.2016.05.004

    authors: Zufiría M,Gil-Bea FJ,Fernández-Torrón R,Poza JJ,Muñoz-Blanco JL,Rojas-García R,Riancho J,López de Munain A

    更新日期:2016-07-01 00:00:00

  • Costorage and coexistence of neuropeptides in the mammalian CNS.

    abstract::The term neuropeptides commonly refers to a relatively large number of biologically active molecules that have been localized to discrete cell populations of central and peripheral neurons. I review here the most important histological and functional findings on neuropeptide distribution in the central nervous system ...

    journal_title:Progress in neurobiology

    pub_type: 杂志文章,评审

    doi:10.1016/s0301-0082(01)00031-4

    authors: Merighi A

    更新日期:2002-02-01 00:00:00

  • Overview: Japanese encephalitis.

    abstract::Japanese encephalitis (JE) is one of the most important endemic encephalitis in the world especially in Eastern and Southeastern Asia. JE affects over 50,000 patients and results in 15,000 deaths annually. JE virus is a single stranded positive sense RNA virus belonging to family flaviviridae. JE virus is transmitted ...

    journal_title:Progress in neurobiology

    pub_type: 杂志文章,评审

    doi:10.1016/j.pneurobio.2010.01.008

    authors: Misra UK,Kalita J

    更新日期:2010-06-01 00:00:00

  • The role of T cells in the pathogenesis of Parkinson's disease.

    abstract::Recent evidence has shown that neuroinflammation plays a key role in the pathogenesis of Parkinson's disease (PD). However, different components of the brain's immune system may exert diverse effects on neuroinflammatory events in PD. The adaptive immune response, especially the T cell response, can trigger type 1 pro...

    journal_title:Progress in neurobiology

    pub_type: 杂志文章,评审

    doi:10.1016/j.pneurobio.2018.08.002

    authors: Chen Z,Chen S,Liu J

    更新日期:2018-10-01 00:00:00

  • Beyond faithful conduction: short-term dynamics, neuromodulation, and long-term regulation of spike propagation in the axon.

    abstract::Most spiking neurons are divided into functional compartments: a dendritic input region, a soma, a site of action potential initiation, an axon trunk and its collaterals for propagation of action potentials, and distal arborizations and terminals carrying the output synapses. The axon trunk and lower order branches ar...

    journal_title:Progress in neurobiology

    pub_type: 杂志文章,评审

    doi:10.1016/j.pneurobio.2011.06.001

    authors: Bucher D,Goaillard JM

    更新日期:2011-09-01 00:00:00

  • BDNF and Netrin-1 repression by C/EBPβ in the gut triggers Parkinson's disease pathologies, associated with constipation and motor dysfunctions.

    abstract::Chronic constipation is one of the most prominent prodromal symptoms in Parkinson's disease (PD), and Lewy bodies, enriched with aggregated α-Synuclein (α-Syn), propagation from the gut into the brain has been proposed to play a key role in PD etiopathogenesis. BDNF (Brain-derived neurotrophic factor) and Netrin-1 pro...

    journal_title:Progress in neurobiology

    pub_type: 杂志文章

    doi:10.1016/j.pneurobio.2020.101905

    authors: Ahn EH,Kang SS,Liu X,Cao X,Choi SY,Musazzi L,Mehlen P,Ye K

    更新日期:2020-09-07 00:00:00

  • On the organization of olfactory and vomeronasal cortices.

    abstract::Classically, the olfactory and vomeronasal pathways are thought to run in parallel non-overlapping axes in the forebrain subserving different functions. The olfactory and vomeronasal epithelia project to the main and accessory olfactory bulbs (primary projections), which in turn project to different areas of the telen...

    journal_title:Progress in neurobiology

    pub_type: 杂志文章,评审

    doi:10.1016/j.pneurobio.2008.09.010

    authors: Martinez-Marcos A

    更新日期:2009-01-12 00:00:00

  • Early application of deep brain stimulation: clinical and ethical aspects.

    abstract::Deep brain stimulation (DBS) has proven to be a successful therapeutic approach in several patients with movement disorders such as Parkinson's disease and dystonia. Hitherto its application was mainly restricted to advanced disease patients resistant to medication or with severe treatment side effects. However, there...

    journal_title:Progress in neurobiology

    pub_type: 杂志文章

    doi:10.1016/j.pneurobio.2013.04.002

    authors: Woopen C,Pauls KA,Koy A,Moro E,Timmermann L

    更新日期:2013-11-01 00:00:00

  • The application of information theory for the research of aging and aging-related diseases.

    abstract::This article reviews the application of information-theoretical analysis, employing measures of entropy and mutual information, for the study of aging and aging-related diseases. The research of aging and aging-related diseases is particularly suitable for the application of information theory methods, as aging proces...

    journal_title:Progress in neurobiology

    pub_type: 杂志文章,评审

    doi:10.1016/j.pneurobio.2016.03.005

    authors: Blokh D,Stambler I

    更新日期:2017-10-01 00:00:00

  • Role of drug efflux transporters in the brain for drug disposition and treatment of brain diseases.

    abstract::The blood-brain barrier (BBB) serves as a protective mechanism for the brain by preventing entry of potentially harmful substances from free access to the central nervous system (CNS). Tight junctions present between the brain microvessel endothelial cells form a diffusion barrier, which selectively excludes most bloo...

    journal_title:Progress in neurobiology

    pub_type: 杂志文章,评审

    doi:10.1016/j.pneurobio.2005.04.006

    authors: Löscher W,Potschka H

    更新日期:2005-05-01 00:00:00

  • Astrocyte elevated gene-1 (AEG-1) and the A(E)Ging HIV/AIDS-HAND.

    abstract::Recent attempts to analyze human immunodeficiency virus (HIV)-1-induced gene expression changes in astrocytes uncovered a multifunctional oncogene, astrocyte elevated gene-1 (AEG-1). Our previous studies revealed that AEG-1 regulates reactive astrocytes proliferation, migration and inflammation, hallmarks of aging and...

    journal_title:Progress in neurobiology

    pub_type: 杂志文章,评审

    doi:10.1016/j.pneurobio.2016.03.006

    authors: Vartak-Sharma N,Nooka S,Ghorpade A

    更新日期:2017-10-01 00:00:00

  • Hyperpolarization activated cyclic-nucleotide gated (HCN) channels in developing neuronal networks.

    abstract::Developing neuronal networks evolve continuously, requiring that neurons modulate both their intrinsic properties and their responses to incoming synaptic signals. Emerging evidence supports roles for the hyperpolarization-activated cyclic nucleotide-gated (HCN) channels in this neuronal plasticity. HCN channels seem ...

    journal_title:Progress in neurobiology

    pub_type: 杂志文章,评审

    doi:10.1016/j.pneurobio.2008.09.007

    authors: Bender RA,Baram TZ

    更新日期:2008-11-01 00:00:00

  • The pedunculopontine nucleus--auditory input, arousal and pathophysiology.

    abstract::This review describes the role of the pedunculopontine nucleus (PPN) in various functions, including sleep-wake mechanisms, arousal, locomotion and in several pathological conditions. Special emphasis is placed on the auditory input to the PPN and the possible role of this nucleus in the manifestation of the P1 middle...

    journal_title:Progress in neurobiology

    pub_type: 杂志文章,评审

    doi:10.1016/0301-0082(95)00023-o

    authors: Reese NB,Garcia-Rill E,Skinner RD

    更新日期:1995-10-01 00:00:00

  • Muscarinic acetylcholine receptors in the hippocampus, neocortex and amygdala: a review of immunocytochemical localization in relation to learning and memory.

    abstract::Immunocytochemical mapping studies employing the extensively used monoclonal anti-muscarinic acetylcholine receptor (mAChR) antibody M35 are reviewed. We focus on three neuronal muscarinic cholinoceptive substrates, which are target regions of the cholinergic basal forebrain system intimately involved in cognitive fun...

    journal_title:Progress in neurobiology

    pub_type: 历史文章,杂志文章,评审

    doi:10.1016/s0301-0082(98)00092-6

    authors: van der Zee EA,Luiten PG

    更新日期:1999-08-01 00:00:00

  • A structural basis for memory storage in mammals.

    abstract::It is proposed that altered dendrite length and de novo formation of new dendrite branches in cholinoceptive cells are responsible for long-term memory storage, a process enabled by the degradation of microtubule-associated protein-2. These memories are encoded as modality-specific associable representations. Accordin...

    journal_title:Progress in neurobiology

    pub_type: 杂志文章,评审

    doi:10.1016/s0301-0082(97)00094-4

    authors: Woolf NJ

    更新日期:1998-05-01 00:00:00

  • Microtransplantation of ligand-gated receptor-channels from fresh or frozen nervous tissue into Xenopus oocytes: a potent tool for expanding functional information.

    abstract::Despite huge improvements in neurobiological approaches for investigating the functional properties of neurotransmitter receptors and ion channels, many difficulties are still encountered when focusing on the human brain. Electrophysiological studies aimed at performing direct determinations on human nervous tissue ar...

    journal_title:Progress in neurobiology

    pub_type: 杂志文章

    doi:10.1016/j.pneurobio.2009.01.008

    authors: Eusebi F,Palma E,Amici M,Miledi R

    更新日期:2009-05-01 00:00:00

  • Covert cognition in the persistent vegetative state.

    abstract::Brain damage can sometimes render a patient persistently unresponsive and yet apparently awake, admitting the possibility that the absence of overt voluntary behaviour might conceal a retained capacity for covert cognition. When given instructions to perform a cognitive task, a minority of patients in such a so-called...

    journal_title:Progress in neurobiology

    pub_type: 杂志文章,评审

    doi:10.1016/j.pneurobio.2010.01.009

    authors: Nachev P,Hacker PM

    更新日期:2010-05-01 00:00:00