Abstract:
:State of the art molecular dynamics simulations are used to study the structure, dynamics, molecular interaction properties and flexibility of DNA and RNA duplexes in aqueous solution. Special attention is paid to the deformability of both types of structures, revisiting concepts on the relative flexibility of DNA and RNA duplexes. Our simulations strongly suggest that the concepts of flexibility, rigidity and deformability are much more complex than usually believed, and that it is not always true that DNA is more flexible than RNA.
journal_name
J Mol Bioljournal_title
Journal of molecular biologyauthors
Noy A,Pérez A,Lankas F,Javier Luque F,Orozco Mdoi
10.1016/j.jmb.2004.07.048keywords:
subject
Has Abstractpub_date
2004-10-22 00:00:00pages
627-38issue
3eissn
0022-2836issn
1089-8638pii
S0022-2836(04)00877-0journal_volume
343pub_type
杂志文章abstract::Abasic lesions are common mutagenic or cytotoxic DNA damages. Ape1 is the major human apurinic/apyrimidinic (AP) endonuclease and initiates repair of abasic sites by catalyzing strand cleavage at the lesion. I show here that Ape1 single-stranded (ss) AP site incision activity prefers 0.5 mM or 2 mM MgCl(2) and low con...
journal_title:Journal of molecular biology
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journal_title:Journal of molecular biology
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pub_type: 杂志文章
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