Abstract:
:We describe a dedicated RNA motif search program and web server to identify RNA riboswitches. The Riboswitch finder analyses a given sequence using the web interface, checks specific sequence elements and secondary structure, calculates and displays the energy folding of the RNA structure and runs a number of tests including this information to determine whether high-sensitivity riboswitch motifs (or variants) according to the Bacillus subtilis type are present in the given RNA sequence. Batch-mode determination (all sequences input at once and separated by FASTA format) is also possible. The program has been implemented and is available both as local software for in-house installation and as a web server at http://www.biozentrum.uni-wuerzburg.de/bioinformatik/Riboswitch/.
journal_name
Nucleic Acids Resjournal_title
Nucleic acids researchauthors
Bengert P,Dandekar Tdoi
10.1093/nar/gkh352keywords:
subject
Has Abstractpub_date
2004-07-01 00:00:00pages
W154-9issue
Web Server issueeissn
0305-1048issn
1362-4962pii
32/suppl_2/W154journal_volume
32pub_type
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