Genome-wide identification of tissue-specific enhancers in the Ciona tadpole.

Abstract:

:Less than 100 cis-regulatory DNAs have been characterized in the context of transgenic metazoan embryos. Here we investigate the feasibility of conducting a genome-wide search for tissue-specific enhancers in the ascidian Ciona intestinalis. A total of 138 random genomic DNA fragments with an average size of 1.7 kb were separately placed 5' of a lacZ reporter gene. Eleven of the lacZ fusion genes displayed localized patterns of expression in tadpole-stage Ciona embryos. At least five of these transgenes appear to contain bona fide tissue-specific enhancers that direct expression in the cerebral vesicle, neural tube, primordial adhesive organ, notochord, and tail epidermis. One of the enhancers maps near Distalless (Ci-Dll-A) and recapitulates most aspects of the endogenous expression pattern, including localized expression in the anterior-most regions of the neurogenic ectoderm. We discuss the prospects of creating a regulatory atlas of the Ciona genome, whereby every enhancer is identified for every gene.

authors

Harafuji N,Keys DN,Levine M

doi

10.1073/pnas.052024999

keywords:

subject

Has Abstract

pub_date

2002-05-14 00:00:00

pages

6802-5

issue

10

eissn

0027-8424

issn

1091-6490

pii

99/10/6802

journal_volume

99

pub_type

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