Origins of individual swimming behavior in bacteria.

Abstract:

:Cells in a cloned population of coliform bacteria exhibit a wide range of swimming behaviors--a form of non-genetic individuality. We used computer models to examine the proposition that these variations are due to differences in the number of chemotaxis signaling molecules from one cell to the next. Simulations were run in which the concentrations of seven gene products in the chemotaxis pathway were changed either deterministically or stochastically, with the changes derived from independent normal distributions. Computer models with two adaptation mechanisms were compared with experimental results from observations on individuals drawn from genetically identical populations. The range of swimming behavior predicted for cells with a standard deviation of protein copy number per cell of 10% of the mean was found to match closely the experimental range of the wild-type population. We also make predictions for the swimming behaviors of mutant strains lacking the adaptational mechanism that can be tested experimentally.

journal_name

Biophys J

journal_title

Biophysical journal

authors

Levin MD,Morton-Firth CJ,Abouhamad WN,Bourret RB,Bray D

doi

10.1016/S0006-3495(98)77777-X

subject

Has Abstract

pub_date

1998-01-01 00:00:00

pages

175-81

issue

1

eissn

0006-3495

issn

1542-0086

pii

S0006-3495(98)77777-X

journal_volume

74

pub_type

杂志文章
  • A model for the action of vinblastine in vivo.

    abstract::A model for the action of vinblastine (VLB) on cells multiplying exponentially in vivo with a generation time, T(G), has been derived. It is based on the assumption that cells attempting to pass through mitosis in the presence of VLB lose their proliferative capacity and that this lethal effect occurs only when the ce...

    journal_title:Biophysical journal

    pub_type: 杂志文章

    doi:10.1016/S0006-3495(66)86646-8

    authors: Valeriote FA,Bruce WR,Meeker BE

    更新日期:1966-03-01 00:00:00

  • Molecular modeling of nearly full-length ErbB2 receptor.

    abstract::Members of the epidermal growth factor receptor family play important roles in various cellular processes, both in physiological and in pathological conditions. Dimerization and autophosphorylation of these receptor tyrosine kinases are key events of signal transduction. Details of the molecular events of the signalin...

    journal_title:Biophysical journal

    pub_type: 杂志文章

    doi:10.1529/biophysj.104.046003

    authors: Bagossi P,Horváth G,Vereb G,Szöllösi J,Tözsér J

    更新日期:2005-02-01 00:00:00

  • The stochastic dynamics of filopodial growth.

    abstract::A filopodium is a cytoplasmic projection, exquisitely built and regulated, which extends from the leading edge of the migrating cell, exploring the cell's neighborhood. Commonly, filopodia grow and retract after their initiation, exhibiting rich dynamical behaviors. We model the growth of a filopodium based on a stoch...

    journal_title:Biophysical journal

    pub_type: 杂志文章

    doi:10.1529/biophysj.107.123778

    authors: Lan Y,Papoian GA

    更新日期:2008-05-15 00:00:00

  • Mechanics and Buckling of Biopolymeric Shells and Cell Nuclei.

    abstract::We study a Brownian dynamics simulation model of a biopolymeric shell deformed by axial forces exerted at opposing poles. The model exhibits two distinct, linear force-extension regimes, with the response to small tensions governed by linear elasticity and the response to large tensions governed by an effective spring...

    journal_title:Biophysical journal

    pub_type: 杂志文章

    doi:10.1016/j.bpj.2017.08.034

    authors: Banigan EJ,Stephens AD,Marko JF

    更新日期:2017-10-17 00:00:00

  • Raman spectroscopic studies of dimyristoylphosphatidic acid and its interactions with ferricytochrome c in cationic binary and ternary lipid-protein complexes.

    abstract::The vibrational Raman spectra of both pure 1-alpha-dimyristoylphosphatidic acid (DMPA) liposomes and DMPA multilayers reconstituted with ferricytochrome c at pH 7 and pH 4, with either sodium or calcium as the cation, are reported as a function of temperature. Multilayers composed of a 1:1 mol ratio DMPA and dimyristo...

    journal_title:Biophysical journal

    pub_type: 杂志文章

    doi:10.1016/S0006-3495(91)82316-5

    authors: Vincent JS,Levin IW

    更新日期:1991-05-01 00:00:00

  • Three-dimensional imaging of lipid gene-carriers: membrane charge density controls universal transfection behavior in lamellar cationic liposome-DNA complexes.

    abstract::Cationic liposomes (CLs) are used worldwide as gene vectors (carriers) in nonviral clinical applications of gene delivery, albeit with unacceptably low transfection efficiencies (TE). We present three-dimensional laser scanning confocal microscopy studies revealing distinct interactions between CL-DNA complexes, for b...

    journal_title:Biophysical journal

    pub_type: 杂志文章

    doi:10.1016/S0006-3495(03)70055-1

    authors: Lin AJ,Slack NL,Ahmad A,George CX,Samuel CE,Safinya CR

    更新日期:2003-05-01 00:00:00

  • Curvature elasticity and refolding of OmpA in large unilamellar vesicles.

    abstract::The stability of OmpA in large unilamellar vesicles of dilauroyl phosphatidylcholine was studied using different concentrations of urea. The effective energy of unfolding, as determined from refolding experiments, is greater than that for small sonicated unilamellar vesicles by an amount that is compatible with estima...

    journal_title:Biophysical journal

    pub_type: 信件

    doi:10.1529/biophysj.106.091439

    authors: Pocanschi CL,Patel GJ,Marsh D,Kleinschmidt JH

    更新日期:2006-10-15 00:00:00

  • New model of charged molecule redistribution induced in spherical vesicles by direct current electric field.

    abstract::A new electrophoresis model of charged components in a spherical phospholipid vesicle is proposed. In the new model the effective local tangential electric field is a result of the uniform external electric field modified by the electric field of redistributed charges. The modification is calculated on the basis of th...

    journal_title:Biophysical journal

    pub_type: 杂志文章

    doi:10.1016/s0006-3495(97)78699-5

    authors: Piasecki W,Salwiński L,Froncisz W

    更新日期:1997-02-01 00:00:00

  • Light scattering at various angles. Theoretical predictions of the effects of particle volume changes.

    abstract::The Mie theory of scattering is used to provide new information on how changes in particle volume, with no change in dry weight, should influence light scattering for various scattering angles and particle sizes. Many biological cells (e.g., algal cells, erythrocytes) and large subcellular structures (e.g., chloroplas...

    journal_title:Biophysical journal

    pub_type: 杂志文章

    doi:10.1016/S0006-3495(72)86120-4

    authors: Latimer P,Pyle BE

    更新日期:1972-07-01 00:00:00

  • Influence of ionic strength on the actomyosin reaction steps in contracting skeletal muscle fibers.

    abstract::Muscle contraction occurs as the result of actin-myosin interaction, which is mediated by the intermolecular forces exerted at the actin-myosin interface. To obtain information about the nature of these intermolecular forces, we tested the sensitivity of various contractile parameters of skinned skeletal muscle fibers...

    journal_title:Biophysical journal

    pub_type: 杂志文章

    doi:10.1016/S0006-3495(00)76850-0

    authors: Iwamoto H

    更新日期:2000-06-01 00:00:00

  • Regulatory Conformational Coupling between CLC Anion Channel Membrane and Cytoplasmic Domains.

    abstract::CLC anion channels are homodimeric proteins. Each subunit is comprised of 18 α-helices designated "A-R" and an intracellular carboxy-terminus containing two cystathionine-β-synthase (CBS1 and CBS2) domains. Conformational coupling between membrane and intracellular domains via poorly understood mechanisms is required ...

    journal_title:Biophysical journal

    pub_type: 杂志文章

    doi:10.1016/j.bpj.2016.09.037

    authors: Yamada T,Strange K

    更新日期:2016-11-01 00:00:00

  • Cholesterol modulates the interaction of beta-amyloid peptide with lipid bilayers.

    abstract::The interaction of an amphiphilic, 40-amino acid beta-amyloid (Abeta) peptide with liposomal membranes as a function of sterol mole fraction (X(sterol)) was studied based on the fluorescence anisotropy of a site-specific membrane sterol probe, dehydroergosterol (DHE), and fluorescence resonance energy transfer (FRET) ...

    journal_title:Biophysical journal

    pub_type: 杂志文章

    doi:10.1016/j.bpj.2009.02.036

    authors: Qiu L,Lewis A,Como J,Vaughn MW,Huang J,Somerharju P,Virtanen J,Cheng KH

    更新日期:2009-05-20 00:00:00

  • Mechanistic Insights into the Modulation of Voltage-Gated Ion Channels by Inhalational Anesthetics.

    abstract::General anesthesia is a relatively safe medical procedure, which for nearly 170 years has allowed life saving surgical interventions in animals and people. However, the molecular mechanism of general anesthesia continues to be a matter of importance and debate. A favored hypothesis proposes that general anesthesia res...

    journal_title:Biophysical journal

    pub_type: 杂志文章,评审

    doi:10.1016/j.bpj.2015.09.032

    authors: Covarrubias M,Barber AF,Carnevale V,Treptow W,Eckenhoff RG

    更新日期:2015-11-17 00:00:00

  • A model of effective diffusion and tortuosity in the extracellular space of the brain.

    abstract::Tortuosity of the extracellular space describes hindrance posed to the diffusion process by a geometrically complex medium in comparison to an environment free of any obstacles. Calculating tortuosity in biologically relevant geometries is difficult. Yet this parameter has proved very important for many processes in t...

    journal_title:Biophysical journal

    pub_type: 杂志文章

    doi:10.1529/biophysj.103.039495

    authors: Hrabe J,Hrabetová S,Segeth K

    更新日期:2004-09-01 00:00:00

  • Environmental effects on the protonation states of active site residues in bacteriorhodopsin.

    abstract::Finite difference solutions of the Poisson-Boltzmann equation are used to calculate the pKa values of the functionally important ionizable groups in bacteriorhodopsin. There are strong charge-charge interactions between the residues in the binding site leading to the possibility of complex titration behavior. Structur...

    journal_title:Biophysical journal

    pub_type: 杂志文章

    doi:10.1016/S0006-3495(94)80925-7

    authors: Sampogna RV,Honig B

    更新日期:1994-05-01 00:00:00

  • PIP2 Reshapes Membranes through Asymmetric Desorption.

    abstract::Phosphatidylinositol-4,5-bisphosphate (PIP2) is an important signaling lipid in eukaryotic cell plasma membranes, playing an essential role in diverse cellular processes. The headgroup of PIP2 is highly negatively charged, and this lipid displays a high critical micellar concentration compared to housekeeping phosphol...

    journal_title:Biophysical journal

    pub_type: 杂志文章

    doi:10.1016/j.bpj.2019.07.047

    authors: Shukla S,Jin R,Robustelli J,Zimmerman ZE,Baumgart T

    更新日期:2019-09-03 00:00:00

  • Functional co-assembly among subunits of cyclic-nucleotide-activated, nonselective cation channels, and across species from nematode to human.

    abstract::Cyclic-nucleotide-activated, nonselective cation channels have a central role in sensory transduction. They are most likely tetramers, composed of two subunits (alpha and beta or 1 and 2), with the former, but not the latter, being able to form homomeric cyclic-nucleotide-activated channels. Identified members of this...

    journal_title:Biophysical journal

    pub_type: 杂志文章

    doi:10.1016/S0006-3495(98)77846-4

    authors: Finn JT,Krautwurst D,Schroeder JE,Chen TY,Reed RR,Yau KW

    更新日期:1998-03-01 00:00:00

  • Are DNA transcription factor proteins maxwellian demons?

    abstract::Transcription factor (TF) proteins rapidly locate unique target sites on long genomic DNA molecules--and bind to them--during gene regulation. The search mechanism is known to involve a combination of three-dimensional diffusion through the bulk of the cell and one-dimensional sliding diffusion along the DNA. It is be...

    journal_title:Biophysical journal

    pub_type: 杂志文章

    doi:10.1529/biophysj.108.129825

    authors: Hu L,Grosberg AY,Bruinsma R

    更新日期:2008-08-01 00:00:00

  • Contribution of electrogenic ion transport to impedance of the algae Valonia utricularis and artificial membranes.

    abstract::The cell membrane of Valonia utricularis contains an electrogenic carrier system for chloride (Wang et al., Biophys J. 59:235-248 (1991)). The electrical impedance of V. utricularis was measured in the frequency range between 1 Hz and 50 kHz. The analysis of the impedance spectra from V. utricularis and its comparison...

    journal_title:Biophysical journal

    pub_type: 杂志文章

    doi:10.1016/S0006-3495(94)80631-9

    authors: Wang J,Zimmermann U,Benz R

    更新日期:1994-10-01 00:00:00

  • Molecular dynamics simulation of lipid reorientation at bilayer edges.

    abstract::Understanding cellular membrane processes is critical for the study of events such as viral entry, neurotransmitter exocytosis, and immune activation. Supported lipid bilayers are commonly used to model these membrane processes experimentally. Despite the relative simplicity of such a system, many important structural...

    journal_title:Biophysical journal

    pub_type: 杂志文章

    doi:10.1529/biophysj.103.029652

    authors: Kasson PM,Pande VS

    更新日期:2004-06-01 00:00:00

  • Trauma of the erythrocyte membrane associated with low shear stress.

    abstract::Studies have been performed on erythrocytes that have been subjected to a low shear stress of less than 100 dyn/cm(2) in a cone-and-plate viscometer. Alterations that were observed included decreased red cell survival, increased osmotic fragility, changes in the cation permeability of the red cell membrane, and a redu...

    journal_title:Biophysical journal

    pub_type: 杂志文章

    doi:10.1016/S0006-3495(73)86056-4

    authors: Nanjappa BN,Chang HK,Glomski CA

    更新日期:1973-11-01 00:00:00

  • Myosin subfragment-1 attachment to actin. Expected effect on equatorial reflections.

    abstract::The characteristic equatorial X-ray pattern from a relaxed vertebrate skeletal muscle changes when the muscle is activated. In particular, there is a simultaneous decrease in the intensity of the first reflection (I10) and increase in the intensity of the second (I11). This observed change is almost reciprocal. When c...

    journal_title:Biophysical journal

    pub_type: 杂志文章

    doi:10.1016/S0006-3495(78)85510-6

    authors: Lymn RW

    更新日期:1978-01-01 00:00:00

  • Discrete membrane surface charge distributions. Effect of fluctuations near individual channels.

    abstract::Each gating mechanism controlling permeability in a membrane may be influenced by only a few charge binding sites on the membrane surface, so that fluctuations in the occupancy of these sites are important. Tow extreme cases arise. (a) The time scale of these fluctuations is much shorter than the gating time constant....

    journal_title:Biophysical journal

    pub_type: 杂志文章

    doi:10.1016/S0006-3495(78)85426-5

    authors: Attwell D,Eisner D

    更新日期:1978-12-01 00:00:00

  • Time-resolved x-ray diffraction and calorimetric studies at low scan rates: II. On the fine structure of the phase transitions in hydrated dipalmitoylphosphatidylethanolamine.

    abstract::The phase transitions of dipalmitoylphosphatidylethanolamine (DPPE) in excess water have been examined by low-angle time-resolved x-ray diffraction and calorimetry at low scan rates. The lamellar subgel/lamellar liquid-crystalline (L(c) --> L(alpha)), lamellar gel/lamellar liquid-crystalline (L(beta) --> L(alpha)), an...

    journal_title:Biophysical journal

    pub_type: 杂志文章

    doi:10.1016/S0006-3495(92)81873-8

    authors: Yao H,Hatta I,Koynova R,Tenchov B

    更新日期:1992-03-01 00:00:00

  • Connexin32 gap junction channels in stably transfected cells. Equilibrium and kinetic properties.

    abstract::Communication-deficient cells (the SKHep1 cell line) were stably transfected with a plasmid containing cDNA which encodes the major gap junction protein of rat liver, connexin32. Application of the dual whole-cell voltage clamp technique with patch electrodes to pairs of transfected SKHep1 cells revealed strong sensit...

    journal_title:Biophysical journal

    pub_type: 杂志文章

    doi:10.1016/S0006-3495(91)82160-9

    authors: Moreno AP,Eghbali B,Spray DC

    更新日期:1991-11-01 00:00:00

  • Two-component coarse-grained molecular-dynamics model for the human erythrocyte membrane.

    abstract::We present a two-component coarse-grained molecular-dynamics model for simulating the erythrocyte membrane. The proposed model possesses the key feature of combing the lipid bilayer and the erythrocyte cytoskeleton, thus showing both the fluidic behavior of the lipid bilayer and the elastic properties of the erythrocy...

    journal_title:Biophysical journal

    pub_type: 杂志文章

    doi:10.1016/j.bpj.2011.11.4012

    authors: Li H,Lykotrafitis G

    更新日期:2012-01-04 00:00:00

  • Persistence length of titin from rabbit skeletal muscles measured with scattering and microrheology techniques.

    abstract::The persistence length of titin from rabbit skeletal muscles was measured using a combination of static and dynamic light scattering, and neutron small angle scattering. Values of persistence length in the range 9-16 nm were found for titin-II, which corresponds to mainly physiologically inelastic A-band part of the p...

    journal_title:Biophysical journal

    pub_type: 杂志文章

    doi:10.1529/biophysj.104.054908

    authors: Di Cola E,Waigh TA,Trinick J,Tskhovrebova L,Houmeida A,Pyckhout-Hintzen W,Dewhurst C

    更新日期:2005-06-01 00:00:00

  • Probing the mechanism of fusion in a two-dimensional computer simulation.

    abstract::A two-dimensional (2D) model of lipid bilayers was developed and used to investigate a possible role of membrane lateral tension in membrane fusion. We found that an increase of lateral tension in contacting monolayers of 2D analogs of liposomes and planar membranes could cause not only hemifusion, but also complete f...

    journal_title:Biophysical journal

    pub_type: 杂志文章

    doi:10.1016/S0006-3495(02)75648-8

    authors: Chanturiya A,Scaria P,Kuksenok O,Woodle MC

    更新日期:2002-06-01 00:00:00

  • Lipid chain-length dependence for incorporation of alamethicin in membranes: electron paramagnetic resonance studies on TOAC-spin labeled analogs.

    abstract::Alamethicin is a 19-residue hydrophobic peptide, which is extended by a C-terminal phenylalaninol but lacks residues that might anchor the ends of the peptide at the lipid-water interface. Voltage-dependent ion channels formed by alamethicin depend strongly in their characteristics on chain length of the host lipid me...

    journal_title:Biophysical journal

    pub_type: 杂志文章

    doi:10.1529/biophysj.107.104026

    authors: Marsh D,Jost M,Peggion C,Toniolo C

    更新日期:2007-06-01 00:00:00

  • Osmotic pressure and packaging structure of caged DNA.

    abstract::We present a theoretical model for aqueous solutions of double-stranded (ds) DNA with explicit consideration of electrostatic interactions, excluded-volume effects, van der Waals attractions, and salt ions. With reasonable parameters estimated from the DNA structure and experimental data for electrolytes, we are able ...

    journal_title:Biophysical journal

    pub_type: 杂志文章

    doi:10.1529/biophysj.107.112508

    authors: Li Z,Wu J,Wang ZG

    更新日期:2008-02-01 00:00:00