A homogeneous method for genotyping with fluorescence polarization.

Abstract:

:We combined the amplification refractory mutation system (ARMS) and fluorescence polarization (FP) to give a homogeneous genomic DNA genotype analysis method. Oligonucleotide probes labeled with the fluorescein dyes fluorescein isothiocyanate and 5-([4,6-dichlorotriazin-2-yl]amino)fluorescein and the rhodamine dye 6-carboxyrhodamine were included in amplification mixes and were annealed to PCR products after amplification. Hybridization was accompanied by an increase in the FP of the probe. We demonstrated homogeneous genotyping by analyzing human DNA samples for delta F508 mutation status of the cystic fibrosis transmembrane conductance regulator gene. The genotypes determined with the method described herein were in full agreement with those obtained by the conventional application of ARMS. We also demonstrated the simultaneous detection of two PCR products in a single reaction. The assay method described is homogeneous and so obviates the necessity to open reaction vessels after amplification. This therefore eliminates PCR carryover contamination.

journal_name

Clin Chem

journal_title

Clinical chemistry

authors

Gibson NJ,Gillard HL,Whitcombe D,Ferrie RM,Newton CR,Little S

subject

Has Abstract

pub_date

1997-08-01 00:00:00

pages

1336-41

issue

8 Pt 1

eissn

0009-9147

issn

1530-8561

journal_volume

43

pub_type

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