Helix variants of troponin C with tailored calcium affinities.

Abstract:

:Muscle fiber contraction is regulated through calcium-induced changes in the conformation of troponin C. In this study, we explored the relationship between the stability of a specific helix in the protein and the metal ion affinity of associated binding sites. Serial replacement of the amino acid at position 130 caused the calcium affinity of the paired Ca2+/Mg2+ sites to be attenuated. In the crystal structures of chicken and turkey troponin C, position 130 is the N-cap residue of the G-helix. The ion affinities of variant proteins were shifted in the order Ile < Gly < Asp < Asn < Thr < Ser. Although differing in ion affinities, the variant proteins all exhibited high cooperativity. The results of this study point to a specific relationship between alpha-helix stability and ion affinity in troponin C and suggest that troponin C may be a paradigm for protein folding problems.

journal_name

Biochemistry

journal_title

Biochemistry

authors

Trigo-Gonzalez G,Awang G,Racher K,Neden K,Borgford T

doi

10.1021/bi00088a038

subject

Has Abstract

pub_date

1993-09-21 00:00:00

pages

9826-31

issue

37

eissn

0006-2960

issn

1520-4995

journal_volume

32

pub_type

杂志文章
  • Solution structure of the 45-residue MgATP-binding peptide of adenylate kinase as examined by 2-D NMR, FTIR, and CD spectroscopy.

    abstract::The structure of a synthetic peptide corresponding to residues 1-45 of rabbit muscle adenylate kinase has been studied in aqueous solution by two-dimensional NMR, FTIR, and CD spectroscopy. This peptide, which binds MgATP and is believed to represent most of the MgATP-binding site of the enzyme [Fry, D.C., Kuby, S.A.,...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00410a009

    authors: Fry DC,Byler DM,Susi H,Brown EM,Kuby SA,Mildvan AS

    更新日期:1988-05-17 00:00:00

  • Thermodynamic and kinetic basis of interfacial activation: resolution of binding and allosteric effects on pancreatic phospholipase A2 at zwitterionic interfaces.

    abstract::A general kinetic model for catalysis by interfacial enzymes is developed. It couples the Michaelis-Menten catalytic turnover cycle at the interface with that in the aqueous phase through the distribution equilibria between the interface and the surrounding aqueous phase. Analysis under two limiting conditions fully d...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi970855x

    authors: Berg OG,Rogers J,Yu BZ,Yao J,Romsted LS,Jain MK

    更新日期:1997-11-25 00:00:00

  • Role of Ca(2+) in the Stability and Function of TMEM16F and 16K.

    abstract::There are 10 transmembrane protein (TMEM) 16-family proteins in humans and mice. Among them, TMEM16F acts as a Ca(2+)-dependent phospholipid scramblase at the plasma membrane. However, how Ca(2+) activates TMEM16F's phospholipid-scramblase activity has not been elucidated. Here we found that in the presence of Ca(2+),...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/acs.biochem.6b00176

    authors: Ishihara K,Suzuki J,Nagata S

    更新日期:2016-06-14 00:00:00

  • Epidermal growth factor from the mouse. Structural characterization by proton nuclear magnetic resonance and nuclear overhauser experiments at 500 MHz.

    abstract::Mouse epidermal growth factor (mEGF), a protein hormone effector molecule that regulates cellular development and division, has been investigated by using proton nuclear magnetic resonance techniques at 500 MHz. Well-resolved downfield aromatic and alpha-CH proton resonances (5.0-8.0 ppm) and an upfield ring current s...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00312a025

    authors: Mayo KH

    更新日期:1984-08-14 00:00:00

  • Subtilisin BPN' variants: increased hydrolytic activity on surface-bound substrates via decreased surface activity.

    abstract::Site-directed mutagenesis and random mutagenesis were used to produce variants of subtilisin BPN' (Bacillus amyloliquefaciens) protease with variable surface adsorption properties. Protease adsorption and peptide hydrolysis rate were measured for these variants using a model substrate consisting of a peptide covalentl...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi951990h

    authors: Brode PF 3rd,Erwin CR,Rauch DS,Barnett BL,Armpriester JM,Wang ES,Rubingh DN

    更新日期:1996-03-12 00:00:00

  • Conformation of magainin-2 and related peptides in aqueous solution and membrane environments probed by Fourier transform infrared spectroscopy.

    abstract::The conformational properties of the magainin family of antimicrobial peptides in aqueous solution and in model membranes have been probed by Fourier transform infrared spectroscopy. The magainins were found to be structureless in aqueous solution at neutral pD, confirming other studies by Raman and circular dichroism...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00147a012

    authors: Jackson M,Mantsch HH,Spencer JH

    更新日期:1992-08-18 00:00:00

  • Characterization of a K+-induced conformational switch in a human telomeric DNA oligonucleotide using 2-aminopurine fluorescence.

    abstract::Human telomeric DNA consists of tandem repeats of the DNA sequence d(GGGTTA). Oligodeoxynucleotide telomere models such as d[A(GGGTTA)(3)GGG] (Tel22) fold in a cation-dependent manner into quadruplex structures consisting of stacked G-quartets linked by d(TTA) loops. NMR has shown that in Na(+) solutions Tel22 forms a...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi901357r

    authors: Gray RD,Petraccone L,Trent JO,Chaires JB

    更新日期:2010-01-12 00:00:00

  • Inhibition of lipid A biosynthesis as the primary mechanism of CHIR-090 antibiotic activity in Escherichia coli.

    abstract::The deacetylation of UDP-3-O-[(R)-3-hydroxymyristoyl]-N-acetylglucosamine (UDP-3-O-acyl-GlcNAc) by LpxC is the committed reaction of lipid A biosynthesis. CHIR-090, a novel N-aroyl-l-threonine hydroxamic acid, is a potent, slow, tight-binding inhibitor of the LpxC deacetylase from the hyperthermophile Aquifex aeolicus...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi6025165

    authors: Barb AW,McClerren AL,Snehelatha K,Reynolds CM,Zhou P,Raetz CR

    更新日期:2007-03-27 00:00:00

  • A mechanism for reducing entropic cost of induced fit in protein--RNA recognition.

    abstract::Induced fit has been postulated to be an important component of ligand interactions with proteins, including protein-DNA interactions. We imagined that the entropic cost of induced fit might be highly dependent on the local protein sequence context around critical contact residues. To investigate this question, we ana...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi960256a

    authors: Ribas de Pouplana L,Auld DS,Kim S,Schimmel P

    更新日期:1996-06-25 00:00:00

  • Delta-elimination by T4 endonuclease V at a thymine dimer site requires a secondary binding event and amino acid Glu-23.

    abstract::Endonuclease V from bacteriophage T4 is a well characterized enzyme that initiates the repair of ultraviolet light induced pyrimidine dimers. Scission of the phosphodiester backbone between the pyrimidines within a dimer, or 3' to an abasic (AP) site, occurs by a beta-elimination mechanism. In addition, high concentra...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00027a031

    authors: Latham KA,Lloyd RS

    更新日期:1995-07-11 00:00:00

  • NMR structures of the C-terminal segment of surfactant protein B in detergent micelles and hexafluoro-2-propanol.

    abstract::Although the membrane-associated surfactant protein B (SP-B) is an essential component of lung surfactant, which is itself essential for life, the molecular basis for its activity is not understood. SP-B's biophysical functions can be partially mimicked by subfragments of the protein, including the C-terminus. We have...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi0481895

    authors: Booth V,Waring AJ,Walther FJ,Keough KM

    更新日期:2004-12-07 00:00:00

  • Isolation and characterization of neutralizing single-chain antibodies against Xenopus mitogen-activated protein kinase kinase from phage display libraries.

    abstract::MAP kinase kinase (MAPKK) is a dual specificity protein kinase that phosphorylates and activates MAP kinase in vivo. In this study, four mouse monoclonal single-chain Fv (scFv) antibodies (Y1-6, Y1-7, Y3-6, and Y3-11) that can specifically bind to Xenopus MAPKK were isolated from combinatorial scFv-displaying phage li...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi960956f

    authors: Kosako H,Akamatsu Y,Tsurushita N,Lee KK,Gotoh Y,Nishida E

    更新日期:1996-10-08 00:00:00

  • Small Molecule Rescue and Glycosidic Conformational Analysis of the Twister Ribozyme.

    abstract::The number of self-cleaving ribozymes has increased sharply in recent years, giving rise to elaborations of the four known ribozyme catalytic strategies, α, β, γ, and δ. One such extension is utilized by the twister ribozyme, which is hypothesized to conduct δ, or general acid catalysis, via N3 of the syn adenine +1 n...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/acs.biochem.9b00742

    authors: Messina KJ,Kierzek R,Tracey MA,Bevilacqua PC

    更新日期:2019-12-03 00:00:00

  • Coupling factor 1 from Escherichia coli lacking subunits delta and epsilon: preparation and specific binding to depleted membranes, mediated by subunits delta or epsilon.

    abstract::A procedure for the preparation of coupling factor 1 (F1) from Escherichia coli lacking subunits delta and epsilon is described. Using chloroform and dimethyl sulfoxide, we can isolate F1 containing only subunits alpha, beta, and gamma [F1(alpha beta gamma)] directly from membrane vesicles in 10-mg quantities. Pure an...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00438a030

    authors: Tuttas-Dörschug R,Hanstein WG

    更新日期:1989-06-13 00:00:00

  • Kinetic consequences of introducing a proximal selenocysteine ligand into cytochrome P450cam.

    abstract::The structural, electronic, and catalytic properties of cytochrome P450cam are subtly altered when the cysteine that coordinates to the heme iron is replaced with a selenocysteine. To map the effects of the sulfur-to-selenium substitution on the individual steps of the catalytic cycle, we conducted a comparative kinet...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/acs.biochem.5b00939

    authors: Vandemeulebroucke A,Aldag C,Stiebritz MT,Reiher M,Hilvert D

    更新日期:2015-11-10 00:00:00

  • Further studies on the binding characteristics of rabbit liver galactose/N-acetylgalactosamine-specific lectin.

    abstract::The affinity of various carbohydrates for the galactose/N-acetylgalactosamine-specific lectin of the rabbit liver was assessed by determining the effect of these carbohydrates on the binding of [125I]asialoorosomucoid (125I-ASOR) by the lectin. To obtain the concentration of the inhibitor that causes 50% reduction in ...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00267a039

    authors: Lee RT,Myers RW,Lee YC

    更新日期:1982-11-23 00:00:00

  • Explanation of pre-steady-state kinetics and decreased burst amplitude of HIV-1 reverse transcriptase at sites of modified DNA bases with an additional, nonproductive enzyme-DNA-nucleotide complex.

    abstract::The majority of pre-steady-state kinetic investigations with HIV-1 reverse transcriptase (HIV-1 RT) have reported substoichiometric bursts (30-50%) of product formation in the initial reaction cycle. By using quantitative amino acid analysis, we have revised the extinction coefficient of the HIV-1 RT heterodimer and s...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi982163u

    authors: Furge LL,Guengerich FP

    更新日期:1999-04-13 00:00:00

  • Understanding the mechanism of beta-hairpin folding via phi-value analysis.

    abstract::The folding kinetics of a 16-residue beta-hairpin (trpzip4) and five mutants were studied by a laser-induced temperature-jump infrared method. Our results indicate that mutations which affect the strength of the hydrophobic cluster lead to a decrease in the thermal stability of the beta-hairpin, as a result of increas...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi052039s

    authors: Du D,Tucker MJ,Gai F

    更新日期:2006-02-28 00:00:00

  • X-ray Structures of the Proprotein Convertase Furin Bound with Substrate Analogue Inhibitors Reveal Substrate Specificity Determinants beyond the S4 Pocket.

    abstract::The proprotein convertase furin is a highly specific serine protease modifying and thereby activating proteins in the secretory pathway by proteolytic cleavage. Its substrates are involved in many diseases, including cancer and infections caused by bacteria and viruses. Understanding furin's substrate specificity is c...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/acs.biochem.7b01124

    authors: Dahms SO,Hardes K,Steinmetzer T,Than ME

    更新日期:2018-02-13 00:00:00

  • Spectral studies on the calcium binding properties of bovine brain S-100b protein.

    abstract::The effect of Ca2+ binding on the circular dichroism (CD) and 270-MHz proton nuclear magnetic resonance (NMR) spectra of brain-specific S-100b calcium binding protein has been examined at two pH values, 8.5 and 7.5. At pH 8.5, S-100b protein binds two Ca2+ per monomer with Kd values of 6 x 10(-5) and 2 x 10(-4) M, whe...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00276a033

    authors: Mani RS,Shelling JG,Sykes BD,Kay CM

    更新日期:1983-03-29 00:00:00

  • Sequential domain unfolding in phosphoglycerate kinase: fluorescence intensity and anisotropy stopped-flow kinetics of several tryptophan mutants.

    abstract::Stopped-flow total intensity and anisotropy experiments on single tryptophan containing mutants of yeast phosphoglycerate kinase (PGK) located in either the carboxy-terminal domain (W308 and W333), amino-terminal domain (W48 and W122), or "hinge" region (W194 and W399) were performed. The results obtained for single t...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00042a028

    authors: Beechem JM,Sherman MA,Mas MT

    更新日期:1995-10-24 00:00:00

  • Purification and properties of nuclease SP.

    abstract::Single-strand-specific nucleases are a diverse and important group of enzymes that are able to cleave a variety of DNA structures present in duplex molecules. Nuclease SP, an enzyme from spinach, has been purified to apparent homogeneity, allowing for the unambiguous characterization of a number of its physical proper...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00104a026

    authors: Strickland JA,Marzilli LG,Puckett JM Jr,Doetsch PW

    更新日期:1991-10-08 00:00:00

  • Cooperative binding of midazolam with testosterone and alpha-naphthoflavone within the CYP3A4 active site: a NMR T1 paramagnetic relaxation study.

    abstract::Recent studies have indicated that CYP3A4 exhibits non-Michaelis-Menten kinetics for numerous substrates. Both homo- and heterotropic activation have been reported, and kinetic models have suggested multiple substrates within the active site. We provide some of the first physicochemical data supporting the hypothesis ...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi051689t

    authors: Cameron MD,Wen B,Allen KE,Roberts AG,Schuman JT,Campbell AP,Kunze KL,Nelson SD

    更新日期:2005-11-01 00:00:00

  • Atrazine chlorohydrolase from Pseudomonas sp. strain ADP is a metalloenzyme.

    abstract::Atrazine chlorohydrolase (AtzA) from Pseudomonas sp. ADP initiates the metabolism of the herbicide atrazine by catalyzing a hydrolytic dechlorination reaction to produce hydroxyatrazine. Sequence analysis revealed AtzA to be homologous to metalloenzymes within the amidohydrolase protein superfamily. AtzA activity was ...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi020415s

    authors: Seffernick JL,McTavish H,Osborne JP,de Souza ML,Sadowsky MJ,Wackett LP

    更新日期:2002-12-03 00:00:00

  • Femtosecond time-resolved absorption spectroscopy of main-form and high-salt peridinin-chlorophyll a-proteins at low temperatures.

    abstract::Steady-state and femtosecond time-resolved optical methods have been used to compare the spectroscopic features and energy transfer dynamics of two systematically different light-harvesting complexes from the dinoflagellate Amphidinium carterae: main-form (MFPCP) and high-salt (HSPCP) peridinin-chlorophyll a-proteins....

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi061217u

    authors: Ilagan RP,Koscielecki JF,Hiller RG,Sharples FP,Gibson GN,Birge RR,Frank HA

    更新日期:2006-11-28 00:00:00

  • Energetics of coiled coil folding: the nature of the transition states.

    abstract::Coiled coils are simple models for studying the association of two polypeptide chains to form a folded protein. Previous work has shown that the folding of a coiled coil can be described by a two-state transition between two unfolded monomeric peptide chains and a folded coiled coil dimer. Here we report the thermodyn...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi002161l

    authors: Bosshard HR,Dürr E,Hitz T,Jelesarov I

    更新日期:2001-03-27 00:00:00

  • Using 2-aminopurine fluorescence to detect bacteriophage T4 DNA polymerase-DNA complexes that are important for primer extension and proofreading reactions.

    abstract::The fluorescence of the base analogue 2-aminopurine (2AP) was used to probe bacteriophage T4 DNA polymerase-induced conformational changes in the template strand produced during the nucleotide incorporation and proofreading reactions. 2AP fluorescence in DNA is quenched by 2AP interactions with neighboring bases, but ...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi051462y

    authors: Hariharan C,Reha-Krantz LJ

    更新日期:2005-12-06 00:00:00

  • Mutational analysis of the "regulatory module" of hormone-sensitive lipase.

    abstract::Hormone-sensitive lipase (HSL) is a rate-limiting enzyme in lipolysis that displays broad substrate specificity. HSL function is regulated by reversible phosphorylation that occurs within a 150 aa "regulatory module" of the protein. The current studies used mutational analysis to dissect the contribution of the "regul...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi049206t

    authors: Wang J,Shen WJ,Patel S,Harada K,Kraemer FB

    更新日期:2005-02-15 00:00:00

  • A method for assessing the stability of a membrane protein.

    abstract::The integral membrane protein diacylglycerol kinase (DGK) from Escherichia coli has been reversibly unfolded in a protein/detergent/mixed micelle system by varying the molar ratio of n-decyl beta-D-maltoside (DM) and sodium dodecyl sulfate (SDS). Unfolding was monitored by circular dichroism (CD) and ultraviolet (UV) ...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi963095j

    authors: Lau FW,Bowie JU

    更新日期:1997-05-13 00:00:00

  • Cross-talk between protein kinase C-alpha (PKC-alpha) and -delta (PKC-delta): PKC-alpha elevates the PKC-delta protein level, altering its mRNA transcription and degradation.

    abstract::Studies utilizing the overexpression of individual isoforms indicated that both PKC-alpha and -delta promote a number of biological effects, including inhibition of DNA synthesis associated with rearrangements of the actin cytoskeleton in the murine B-cell lymphoma (Baf3), differentiation of the murine promyelocyte li...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi9731807

    authors: Romanova LY,Alexandrov IA,Nordan RP,Blagosklonny MV,Mushinski JF

    更新日期:1998-04-21 00:00:00