Composition and structure of zinc-deficient Euglena gracilis chromatin.

Abstract:

:The histone content of zinc-deficient (-Zn) Euglena gracilis decreases while, concomitantly, DNA content increases and the transcription rate is reduced markedly [Mazus, B., Falchuk, K. H., & Vallee, B. L. (1983) Biochemistry (in press); Falchuk, K. H., Fawcett, D. W., & Vallee, B. L. (1975) J. Cell Sci. 17, 57-78]. The effects on major constituents of the genome have been examined by studying the rate and extent of hydrolysis of +Zn and -Zn chromatin by micrococcal nuclease, DNase I, or DNase II. The size of hydrolyzed DNA fragments suggests similarity of the +Zn E. gracilis chromatin organization to that of other eukaryotes. The major protein constituent of -Zn chromatin is a polypeptide of less than 3000 daltons whose electrophoretic mobility differs from that of any known histone components of chromatin, the latter described elsewhere (K. H. Falchuk et al., unpublished results). This protein profoundly affects the structure of -Zn chromatin, which is about 10-30-fold more resistant to micrococcal nuclease hydrolysis than +Zn chromatin. Moreover, the resultant DNA fragments [2000 base pairs (bp)], are much larger than those of +Zn cells. Under conditions which hydrolyze +Zn chromatin into DNA fragments smaller than 50 bp, only 50% of -Zn chromatin is digested into fragments less than 2000 bp, i.e., in the range of those expected for oligonucleosomes. Removal of the low molecular weight protein from -Zn chromatin reverses its enhanced resistance to nucleolysis and results in extensive hydrolysis. Conversely, addition of the low molecular weight protein to +Zn chromatin increases the resistance of this complex to digestion.(ABSTRACT TRUNCATED AT 250 WORDS)

journal_name

Biochemistry

journal_title

Biochemistry

authors

Stankiewicz AJ,Falchuk KH,Vallee BL

doi

10.1021/bi00291a014

subject

Has Abstract

pub_date

1983-10-25 00:00:00

pages

5150-6

issue

22

eissn

0006-2960

issn

1520-4995

journal_volume

22

pub_type

杂志文章
  • Synthesis and biological evaluation in vitro of selective, high affinity peptide antagonists of human melanin-concentrating hormone action at human melanin-concentrating hormone receptor 1.

    abstract::Human melanin-concentrating hormone (hMCH) and many of its analogues are potent but nonspecific ligands for human melanin-concentrating hormone receptors 1 and 2 (hMCH-1R and hMCH-2R). To differentiate between the physiological functions of these receptors, selective antagonists are needed. In this study, analogues of...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi0200514

    authors: Bednarek MA,Hreniuk DL,Tan C,Palyha OC,MacNeil DJ,Van der Ploeg LH,Howard AD,Feighner SD

    更新日期:2002-05-21 00:00:00

  • Theory for the folding and stability of globular proteins.

    abstract::Using lattice statistical mechanics, we develop theory to account for the folding of a heteropolymer molecule such as a protein to the globular and soluble state. Folding is assumed to be driven by the association of solvophobic monomers to avoid solvent and opposed by the chain configurational entropy. Theory predict...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00327a032

    authors: Dill KA

    更新日期:1985-03-12 00:00:00

  • Tyrosine dephosphorylation, but not phosphorylation, of p130Cas is dependent on integrin alpha IIb beta 3-mediated aggregation in platelets: implication of p130Cas involvement in pathways unrelated to cytoskeletal reorganization.

    abstract::The newly described adapter molecule p130 Crk-associated substrate (Cas) has been reported to contribute to cytoskeletal organization through assembly of actin filaments and to be pivotal in embryonic development and in oncogene-mediated transformation. We characterized the regulation of Cas tyrosine phosphorylation i...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi991849z

    authors: Ohmori T,Yatomi Y,Inoue K,Satoh K,Ozaki Y

    更新日期:2000-05-16 00:00:00

  • Characterization of electron tunneling and hole hopping reactions between different forms of MauG and methylamine dehydrogenase within a natural protein complex.

    abstract::Respiration, photosynthesis, and metabolism require the transfer of electrons through and between proteins over relatively long distances. It is critical that this electron transfer (ET) occur with specificity to avoid cellular damage, and at a rate that is sufficient to support the biological activity. A multistep ho...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi300817d

    authors: Choi M,Shin S,Davidson VL

    更新日期:2012-09-04 00:00:00

  • Identification of potential regulatory sites of the Na+,K+-ATPase by kinetic analysis.

    abstract::Kinetic models are presented that allow the Na(+),K(+)-ATPase steady-state turnover number to be estimated at given intra- and extracellular concentrations of Na(+), K(+), and ATP. Based on experimental transient kinetic data, the models utilize either three or four steps of the Albers-Post scheme, that is, E(2) --> E...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi0355443

    authors: Kong BY,Clarke RJ

    更新日期:2004-03-02 00:00:00

  • Active site modifications in a double mutant of liver alcohol dehydrogenase: structural studies of two enzyme-ligand complexes.

    abstract::The oxidation of alcohol to aldehyde by horse liver alcohol dehydrogenase (LADH) requires the transfer of a hydride ion from the alcohol substrate to the cofactor nicotinamide adenine dinucleotide (NAD). A quantum mechanical tunneling contribution to this hydride transfer step has been demonstrated in a number of LADH...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi973184b

    authors: Colby TD,Bahnson BJ,Chin JK,Klinman JP,Goldstein BM

    更新日期:1998-06-30 00:00:00

  • An actin-binding site on the 20K fragment of myosin subfragment 1.

    abstract::Myosin subfragment 1 (S1) was covalently labeled with a fluorescent dye, N-[7-(dimethylamino)-4-methyl-3-coumarinyl]maleimide (DACM), and then digested by trypsin to cleave S1 heavy chain into fragments. The DACM-labeled and trypsin-treated S1 was complexed with F-actin and treated with a zero-length cross-linker, 1-e...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00262a043

    authors: Sutoh K

    更新日期:1982-09-14 00:00:00

  • Proposed mechanism for the cytochrome P450-catalyzed conversion of aldehydes to hydrocarbons in the house fly, Musca domestica.

    abstract::Experiments were performed to elucidate the mechanism of hydrocarbon formation in microsomal preparations from the house fly, Musca domestica. Antibody to both house fly cytochrome P450 reductase and a purified cytochrome P450 (CYP6A1) from the house fly inhibited (Z)-9-tricosene (Z9-23:Hy) formation from [15,16-3H]-(...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00049a038

    authors: Reed JR,Quilici DR,Blomquist GJ,Reitz RC

    更新日期:1995-12-12 00:00:00

  • Investigating Pharmacological Targeting of G-Quadruplexes in the Human Malaria Parasite.

    abstract::The unique occurrence of G-quadruplexes in the AT-rich genome of human malaria parasite Plasmodium falciparum provides hints about their critical roles in parasite survival, pathogenesis, and host immune evasion. An intriguing question is whether these noncanonical structures can serve as molecular targets for small m...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/acs.biochem.7b00964

    authors: Anas M,Sharma R,Dhamodharan V,Pradeepkumar PI,Manhas A,Srivastava K,Ahmed S,Kumar N

    更新日期:2017-12-26 00:00:00

  • Effect of cholesterol on the membrane interaction of Modelin-5 isoforms.

    abstract::Modelin-5 isoforms were used to gain an insight into the effects of amidation on antimicrobial selectivity. When tested against Escherichia coli, amidation increased toxicity 10-fold (MIC = 31.25 μM) while showing limited increased hemolytic activity (2% lysis). Our results show that both the amidated and non-amidated...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi201267v

    authors: Dennison SR,Phoenix DA

    更新日期:2011-12-20 00:00:00

  • Sugar binding induced charge translocation in the melibiose permease from Escherichia coli.

    abstract::Electrogenic events associated with the activity of the melibiose permease (MelB), a transporter from Escherichia coli, were investigated. Proteoliposomes containing purified MelB were adsorbed to a solid supported lipid membrane, activated by a substrate concentration jump, and transient currents were measured. When ...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi0489053

    authors: Meyer-Lipp K,Ganea C,Pourcher T,Leblanc G,Fendler K

    更新日期:2004-10-05 00:00:00

  • Interaction of the antitumor compound cryptophycin-52 with tubulin.

    abstract::Cryptophycin-52 (LY355703) is currently undergoing clinical evaluation for cancer chemotherapy. It is a potent suppressor of microtubule dynamics in vitro, and low picomolar concentrations appear to inhibit cancer cell proliferation at mitosis by stabilizing spindle microtubules. In the present study, using [(3)H]cryp...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi0010827

    authors: Panda D,Ananthnarayan V,Larson G,Shih C,Jordan MA,Wilson L

    更新日期:2000-11-21 00:00:00

  • Nuclear magnetic resonance and neutron diffraction studies of the complex of ribonuclease A with uridine vanadate, a transition-state analogue.

    abstract::The complex of ribonuclease A (RNase A) with uridine vanadate (U-V), a transition-state analogue, has been studied with 51V and proton NMR spectroscopy in solution and by neutron diffraction in the crystalline state. Upon the addition of aliquots of U-V at pH 6.6, the C epsilon-H resonances of the two active-site hist...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00329a038

    authors: Borah B,Chen CW,Egan W,Miller M,Wlodawer A,Cohen JS

    更新日期:1985-04-09 00:00:00

  • Structure of bovine adrenal dopamine beta-monooxygenase, as deduced from cDNA and protein sequencing: evidence that the membrane-bound form of the enzyme is anchored by an uncleaved signal peptide.

    abstract::A full-length cDNA for dopamine beta-monooxygenase (D beta M) from bovine adrenal glands has been cloned and sequenced. The soluble and membrane-derived forms of D beta M have also been sequenced from their N-termini. While the observed sequences for the soluble protein correspond to those previously reported [Joh, T....

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00452a026

    authors: Taljanidisz J,Stewart L,Smith AJ,Klinman JP

    更新日期:1989-12-26 00:00:00

  • Identification of the sterol- and actin-binding domains of plasma vitamin D binding protein (Gc-globulin).

    abstract::The mammalian plasma vitamin D binding protein (DBP), or Gc-globulin, is recognized to have at least two functional properties: sterol binding and G-actin sequestration. Affinity labeling of the sterol binding site with the radioactive electrophilic ligand, 3 beta-(bromoacetoxy)-25-hydroxycholecalciferol, followed by ...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00146a021

    authors: Haddad JG,Hu YZ,Kowalski MA,Laramore C,Ray K,Robzyk P,Cooke NE

    更新日期:1992-08-11 00:00:00

  • ATP-induced dimerization of the F0F1 ε subunit from Bacillus PS3: a hydrogen exchange-mass spectrometry study.

    abstract::F0F1 ATP synthase harnesses a transmembrane electrochemical gradient for the production of ATP. When operated in reverse, this multiprotein complex catalyzes ATP hydrolysis. In bacteria, the ε subunit is involved in regulating this ATPase activity. Also, ε is essential for coupling ATP hydrolysis (or synthesis) to pro...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi5004684

    authors: Rodriguez AD,Dunn SD,Konermann L

    更新日期:2014-06-24 00:00:00

  • Structure of the S100A6 complex with a fragment from the C-terminal domain of Siah-1 interacting protein: a novel mode for S100 protein target recognition.

    abstract::S100A6 is a member of the S100 subfamily of EF-hand Ca (2+) binding proteins that has been shown to interact with calcyclin binding protein/Siah-1 interacting protein (CacyBP/SIP or SIP), a subunit of an SCF-like E3 ubiquitin ligase complex (SCF-TBL1) formed under genotoxic stress. SIP serves as a scaffold in this com...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi801233z

    authors: Lee YT,Dimitrova YN,Schneider G,Ridenour WB,Bhattacharya S,Soss SE,Caprioli RM,Filipek A,Chazin WJ

    更新日期:2008-10-14 00:00:00

  • Cholesterol dynamics in membranes of raft composition: a molecular point of view from 2H and 31P solid-state NMR.

    abstract::Lipidic membrane systems that have been reported to be composed of sphingomyelin (SM)-cholesterol (Chol) microdomains or "rafts" by Dietrich et al. [palmitoyloleoyl-phosphatidylcholine(POPC)/SM/Chol, 1/1/1; Dietrich, C., Bagatolli, L. A., Volovyk, Z. N., Thompson, N. L., Levi, M., Jacobson, K., and Gratton, E. (2001) ...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi026717b

    authors: Aussenac F,Tavares M,Dufourc EJ

    更新日期:2003-02-18 00:00:00

  • Structural Basis for Substrate and Oxygen Activation in Homoprotocatechuate 2,3-Dioxygenase: Roles of Conserved Active Site Histidine 200.

    abstract::Kinetic and spectroscopic studies have shown that the conserved active site residue His200 of the extradiol ring-cleaving homoprotocatechuate 2,3-dioxygenase (FeHPCD) from Brevibacterium fuscum is critical for efficient catalysis. The roles played by this residue are probed here by analysis of the steady-state kinetic...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/acs.biochem.5b00709

    authors: Kovaleva EG,Rogers MS,Lipscomb JD

    更新日期:2015-09-01 00:00:00

  • Enzyme kinetics in solvents of increased viscosity. Dynamic aspects of carbonic anhydrase catalysis.

    abstract::The dependence of enzymatic catalysis on diffusion rates in solution was examined with regard to high specific activity carbonic anhydrase (CA II) by varying the viscosity of the reaction medium with added glycerol, sucrose, and ficoll (a copolymer of sucrose and epichlorohydrin). Responses of the Michaelis-Menten par...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00383a028

    authors: Pocker Y,Janjić N

    更新日期:1987-05-05 00:00:00

  • Antiapoptotic signaling by the insulin receptor in Chinese hamster ovary cells.

    abstract::We have sought to determine whether insulin can promote cell survival and protect Chinese hamster ovary (CHO) cells from apoptosis induced by serum starvation. Low concentrations of insulin were antiapoptotic for cells overexpressing wild-type insulin receptors but not in cells transfected with kinase-defective insuli...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi9805947

    authors: Lee-Kwon W,Park D,Baskar PV,Kole S,Bernier M

    更新日期:1998-11-10 00:00:00

  • Regulation of phenylalanine hydroxylase: conformational changes upon phenylalanine binding detected by hydrogen/deuterium exchange and mass spectrometry.

    abstract::Phenylalanine acts as an allosteric activator of the tetrahydropterin-dependent enzyme phenylalanine hydroxylase. Hydrogen/deuterium exchange monitored by mass spectrometry has been used to gain insight into local conformational changes accompanying activation of rat phenylalanine hydroxylase by phenylalanine. Peptide...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi1001294

    authors: Li J,Dangott LJ,Fitzpatrick PF

    更新日期:2010-04-20 00:00:00

  • Endogenous 5-methylcytosine protects neighboring guanines from N7 and O6-methylation and O6-pyridyloxobutylation by the tobacco carcinogen 4-(methylnitrosamino)-1-(3-pyridyl)-1-butanone.

    abstract::All CG dinucleotides along exons 5-8 of the p53 tumor suppressor gene contain endogenous 5-methylcytosine (MeC). These same sites (e.g., codons 157, 158, 245, 248, and 273) are mutational hot spots in smoking-induced lung cancer. Several groups used the UvrABC endonuclease incision assay to demonstrate that methylated...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi035259j

    authors: Ziegel R,Shallop A,Upadhyaya P,Jones R,Tretyakova N

    更新日期:2004-01-20 00:00:00

  • Structural analysis of ribosomal protein L7/L12 by the heterobifunctional cross-linker 4-(6-formyl-3-azidophenoxy)butyrimidate.

    abstract::The structure of the dimeric form of the protein L7/L12 from ribosomes from Escherichia coli was studied by using the heterobifunctional cross-linker 4-(6-formyl-3-azidophenoxy)butyrimidate. The imidate group of the cross-linker reacts very specifically with Lys-51 of L7/L12. Subsequent cross-linking of this modified ...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00507a057

    authors: Maassen JA,Schop EN,Möller W

    更新日期:1981-02-17 00:00:00

  • Conformational insights into the lesion and sequence effects for arylamine-induced translesion DNA synthesis: 19F NMR, surface plasmon resonance, and primer kinetic studies.

    abstract::Adduct-induced DNA damage can affect transcription efficiency and DNA replication and repair. We previously investigated the effects of the 3'-next flanking base (G*CT vs G*CA; G*, FABP, N-(2'-deoxyguanosin-8-yl)-4'-fluoro-4-aminobiphenyl; FAF, N-(2'-deoxyguanosin-8-yl)-7-fluoro-2-aminofluorene) on the conformation of...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi5003212

    authors: Jain V,Vaidyanathan VG,Patnaik S,Gopal S,Cho BP

    更新日期:2014-06-24 00:00:00

  • Crystallographic Structures of IlvN·Val/Ile Complexes: Conformational Selectivity for Feedback Inhibition of Aceto Hydroxy Acid Synthases.

    abstract::Conformational factors that predicate selectivity for valine or isoleucine binding to IlvN leading to the regulation of aceto hydroxy acid synthase I (AHAS I) of Escherichia coli have been determined for the first time from high-resolution (1.9-2.43 Å) crystal structures of IlvN·Val and IlvN·Ile complexes. The valine ...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/acs.biochem.9b00050

    authors: Bansal A,Karanth NM,Demeler B,Schindelin H,Sarma SP

    更新日期:2019-04-16 00:00:00

  • Identification of the neuronal acceptor in bovine cortex for ammodytoxin C, a presynaptically neurotoxic phospholipase A2.

    abstract::A specific, high-affinity binding site for ammodytoxin C in synaptic membranes from bovine cerebral cortex was detected and partially characterized. Equilibrium binding analysis revealed a single population of [125I]ammodytoxin C acceptors with the following binding parameters: Kd = 6.0 nM and Bmax = 5.7 pmol/mg membr...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00250a049

    authors: Krizaj I,Dolly JO,Gubensek F

    更新日期:1994-11-22 00:00:00

  • Glutathione Directly Intercepts DNA Radicals To Inhibit Oxidative DNA-Protein Cross-Linking Induced by the One-Electron Oxidation of Guanine.

    abstract::Oxidative DNA damage can lead to cancer, and as enzymatic DNA repair systems become compromised during the aging process, the role of exogenous antioxidants becomes more critical. Here, we examined whether such non-enzymatic DNA repair can be effected by the common cellular antioxidant glutathione, investigating both ...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/acs.biochem.9b00697

    authors: Safaeipour M,Jauregui J,Castillo S,Bekarian M,Esparza D,Sanchez M,Stemp EDA

    更新日期:2019-11-19 00:00:00

  • Crystal structure of substrate-free Pseudomonas putida cytochrome P-450.

    abstract::The crystal structure of Pseudomonas putida cytochrome P-450cam in the substrate-free form has been refined at 2.20-A resolution and compared to the substrate-bound form of the enzyme. In the absence of the substrate camphor, the P-450cam heme iron atom is hexacoordinate with the sulfur atom of Cys-357 providing one a...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00366a049

    authors: Poulos TL,Finzel BC,Howard AJ

    更新日期:1986-09-09 00:00:00

  • Solution structure of oxidized cytochrome c6 from the green alga Monoraphidium braunii.

    abstract::Cytochrome c6 from Monoraphidium braunii, an 89-amino acid electron transfer protein, has been investigated by NMR in solution, in its oxidized form, at pH 7 and 300 K. By using a combination of COSY, TOCSY, and NOESY experiments, 84% of the proton resonances have been assigned. A total of 1668 experimental NOE constr...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi972765y

    authors: Banci L,Bertini I,De la Rosa MA,Koulougliotis D,Navarro JA,Walter O

    更新日期:1998-04-07 00:00:00