Development and preliminary evaluation of a rapid oligochromatographic assay for specific detection of new human influenza A H1N1 virus.

Abstract:

:A new oligochromatographic assay, Speed-Oligo Novel Influenza A H1N1, was designed and optimized for the specific detection of the 2009 influenza A H1N1 virus. The assay is based on a PCR method coupled to detection of PCR products by means of a dipstick device. The target sequence is a 103-bp fragment within the hemagglutinin gene. The analytical sensitivity of the new assay was measured with serial dilutions of a plasmid that contained the target sequence, and we determined that down to one copy per reaction of the plasmid was reliably detected. Diagnostic performance was assessed with 103 RNAs from suspected cases (40 positive and 63 negative results) previously analyzed with a reference real-time PCR technique. All positive cases were confirmed, and no false-positive results were detected with the new assay. No cross-reactions were observed when other viral strains or clinical samples with other respiratory viruses were tested. According to these results, this new assay has 100% sensitivity and specificity. The turnaround time for the whole procedure was 140 min. The assay may be especially useful for the specific detection of 2009 H1N1 virus in laboratories not equipped with real-time PCR instruments.

journal_name

J Clin Microbiol

authors

Pérez-Ruiz M,Navarro-Marí JM,Bautista-Marín MF,Pedrosa-Corral I,Sanbonmatsu-Gámez S,Camacho AG,Rojas J,Ruiz-Ortiz J,Rodríguez-Granger J,Carrillo JA

doi

10.1128/JCM.01487-09

subject

Has Abstract

pub_date

2010-05-01 00:00:00

pages

1801-5

issue

5

eissn

0095-1137

issn

1098-660X

pii

JCM.01487-09

journal_volume

48

pub_type

杂志文章
  • Luminol-amplified chemiluminescence: a sensitive method for detecting the carrier state in chronic granulomatous disease.

    abstract::Patients with chronic granulomatous disease have a marked defect in neutrophil oxidative metabolism and microbicidal activity. Asymptomatic mothers of males with the disease can usually be identified as heterozygous carriers by intermediate leukocyte function. Most mothers of females with the disease, however, have no...

    journal_title:Journal of clinical microbiology

    pub_type: 杂志文章

    doi:10.1128/JCM.12.1.52-56.1980

    authors: Mills EL,Rholl KS,Quie PG

    更新日期:1980-07-01 00:00:00

  • Highly specific and quick detection of Mycobacterium avium subsp. paratuberculosis in feces and gut tissue of cattle and humans by multiple real-time PCR assays.

    abstract::Mycobacterium avium subsp. paratuberculosis is the causative agent of Johne's disease (JD) in cattle and may be associated with Crohn's disease (CD) in humans. It is the slowest growing of the cultivable mycobacteria, and culture from clinical, veterinary, food, or environmental specimens can take 4 months or even lon...

    journal_title:Journal of clinical microbiology

    pub_type: 杂志文章

    doi:10.1128/JCM.01492-10

    authors: Imirzalioglu C,Dahmen H,Hain T,Billion A,Kuenne C,Chakraborty T,Domann E

    更新日期:2011-05-01 00:00:00

  • Multilocus variable-number tandem-repeat polymorphism among Brazilian Enterococcus faecalis strains.

    abstract::Multilocus variable-number tandem-repeat analysis (MLVA) for seven genomic loci was developed for Enterococcus faecalis. MLVA and pulsed-field gel electrophoresis (PFGE) resulted in 37 and 31 genotypes among 83 strains, respectively. Both typing schemes were highly concordant (90.4%). MLVA is an excellent alternative ...

    journal_title:Journal of clinical microbiology

    pub_type: 杂志文章

    doi:10.1128/JCM.42.10.4879-4881.2004

    authors: Titze-de-Almeida R,Willems RJ,Top J,Rodrigues IP,Ferreira RF 2nd,Boelens H,Brandileone MC,Zanella RC,Felipe MS,van Belkum A

    更新日期:2004-10-01 00:00:00

  • Relationship between frequency of infectious human immunodeficiency virus type 1-harboring cells and kinetics of viral replication: a simple procedure for quantitation of infectious virus-carrying cells in blood samples.

    abstract::Statistical analysis of a limiting dilution assay (LDA) showed that the occurrence of infectious human immunodeficiency virus type 1 (HIV-1)-harboring cells in serially diluted samples of peripheral blood mononuclear cells (PBMCs) of HIV-1-seropositive patients fits the model describing a single-hit Poisson distributi...

    journal_title:Journal of clinical microbiology

    pub_type: 杂志文章

    doi:10.1128/JCM.30.10.2535-2538.1992

    authors: Lu W,Manolikakis G,Andrieu JM

    更新日期:1992-10-01 00:00:00

  • Comparison of ortho respiratory syncytial virus enzyme-linked immunosorbent assay and HEp-2 cell culture.

    abstract::Two hundred seventy nasopharyngeal aspirates were tested in duplicate with the Ortho Diagnostics, Inc. (Raritan, N.J.), respiratory syncytial virus antigen enzyme-linked immunosorbent assay. The test was sensitive (80 to 82%) and specific (96%) when compared with cell culture. The enzyme-linked immunosorbent assay det...

    journal_title:Journal of clinical microbiology

    pub_type: 杂志文章

    doi:10.1128/JCM.22.6.1071-1072.1985

    authors: Bromberg K,Tannis G,Daidone B,Clarke L,Sierra MF

    更新日期:1985-12-01 00:00:00

  • Use of the GenoType Mycobacterium CM and AS assays to analyze 76 nontuberculous mycobacterial isolates from Greece.

    abstract::Seventy-six nontuberculous mycobacterial isolates obtained from patients living in Greece were analyzed with the GenoType Mycobacterium CM (for common mycobacteria) and AS (for additional species) assays. GenoType correctly identified all but one of the mycobacterial species. For this species, additional probes should...

    journal_title:Journal of clinical microbiology

    pub_type: 杂志文章

    doi:10.1128/JCM.02088-05

    authors: Gitti Z,Neonakis I,Fanti G,Kontos F,Maraki S,Tselentis Y

    更新日期:2006-06-01 00:00:00

  • Molecular typing of Yersinia pseudotuberculosis by using an IS200-like element.

    abstract::The IS200-like insertion sequence (IS) is a 708-bp element recently found in Yersinia pestis. Its nucleotide sequence is 85% identical to that of IS200 recovered in most Salmonella enterica isolates. It is also present in multiple copies in Y. pseudotuberculosis. In contrast, this IS is found in some (biotype 1B strai...

    journal_title:Journal of clinical microbiology

    pub_type: 杂志文章

    doi:10.1128/JCM.34.9.2231-2235.1996

    authors: Odaert M,Berche P,Simonet M

    更新日期:1996-09-01 00:00:00

  • Failure of serology in diagnosing chlamydial infections of the female genital tract.

    abstract::Chlamydia trachomatis was recoved from 20% (36/180) of women attending a venereal disease clinic. All infected women had chlamydial antibodies in their serum and cervical secretions. However, the background rates of chlamydial antibody in chlamydia-negative women were very high. Measurement of antibodies in serum (com...

    journal_title:Journal of clinical microbiology

    pub_type: 杂志文章

    doi:10.1128/JCM.10.5.647-649.1979

    authors: Schachter J,Cles L,Ray R,Hines PA

    更新日期:1979-11-01 00:00:00

  • Whole-Genome Multilocus Sequence Typing of Extended-Spectrum-Beta-Lactamase-Producing Enterobacteriaceae.

    abstract::Molecular typing has become indispensable in the detection of nosocomial transmission of bacterial pathogens and the identification of sources and routes of transmission in outbreak settings, but current methods are labor-intensive, are difficult to standardize, or have limited resolution. Whole-genome multilocus sequ...

    journal_title:Journal of clinical microbiology

    pub_type: 杂志文章

    doi:10.1128/JCM.01648-16

    authors: Kluytmans-van den Bergh MF,Rossen JW,Bruijning-Verhagen PC,Bonten MJ,Friedrich AW,Vandenbroucke-Grauls CM,Willems RJ,Kluytmans JA

    更新日期:2016-12-01 00:00:00

  • Contribution of the BacT/Alert MB Mycobacterium bottle to bloodstream infection surveillance in Thailand: added yield for Burkholderia pseudomallei.

    abstract::Community-acquired bloodstream infections cause substantial morbidity and mortality worldwide, but microbiology capacity and surveillance limitations have challenged good descriptions of pathogen distribution in many regions, including Southeast Asia. Active surveillance for bloodstream infections has been conducted i...

    journal_title:Journal of clinical microbiology

    pub_type: 杂志文章

    doi:10.1128/JCM.02008-14

    authors: Jorakate P,Higdon M,Kaewpan A,Makprasert S,Yuenprakhon S,Tawisaid K,Dejsirilert S,Whistler T,Baggett HC

    更新日期:2015-03-01 00:00:00

  • Detection and quantification of Plasmodium falciparum in blood samples using quantitative nucleic acid sequence-based amplification.

    abstract::A quantitative nucleic acid sequence-based amplification (QT-NASBA) assay for the detection of Plasmodium parasites has been developed. Primers and probes were selected on the basis of the sequence of the small-subunit rRNA gene. Quantification was achieved by coamplification of the RNA in the sample with one modified...

    journal_title:Journal of clinical microbiology

    pub_type: 杂志文章

    doi:10.1128/JCM.38.11.4072-4075.2000

    authors: Schoone GJ,Oskam L,Kroon NC,Schallig HD,Omar SA

    更新日期:2000-11-01 00:00:00

  • Molecular analysis of Malassezia microflora on the skin of atopic dermatitis patients and healthy subjects.

    abstract::Members of the genus Malassezia, lipophilic yeasts, are considered to be one of the exacerbating factors in atopic dermatitis (AD). We examined variation in cutaneous colonization by Malassezia species in AD patients and compared it with variation in healthy subjects. Samples were collected by applying transparent dre...

    journal_title:Journal of clinical microbiology

    pub_type: 杂志文章

    doi:10.1128/JCM.39.10.3486-3490.2001

    authors: Sugita T,Suto H,Unno T,Tsuboi R,Ogawa H,Shinoda T,Nishikawa A

    更新日期:2001-10-01 00:00:00

  • Rapid identification of nonfermentative gram-negative rods by the Corning N/F system.

    abstract::A total of 1,298 nonfermentative gram-negative rods were used to evaluate the performance of the individual biochemical tests in the N/F System and to determine whether the observed results included sufficient key reactions for rapid identification. The system included an oxidase test, two screening tubes providing 5 ...

    journal_title:Journal of clinical microbiology

    pub_type: 杂志文章

    doi:

    authors: Barnishan J,Ayers LW

    更新日期:1979-02-01 00:00:00

  • Use of quantitative HIV RNA detection for early diagnosis of HIV infection in infants and acute HIV infections in Alberta, Canada.

    abstract::Quantitative HIV RNA viral load (QVL) assays (Roche Diagnostics) were sensitive and specific when used to diagnose HIV infection in (i) HIV-exposed infants (sensitivity of 100% [63.1 to 100%] and specificity of 100% [97.9 to 100%]) and (ii) suspected acute HIV infection patients with a negative/indeterminate Western b...

    journal_title:Journal of clinical microbiology

    pub_type: 杂志文章

    doi:10.1128/JCM.05471-11

    authors: Lee BE,Plitt SS,Jayaraman GC,Chui L,Singh AE,Preiksaitis JK

    更新日期:2012-02-01 00:00:00

  • Detection of Shigella dysenteriae type 1 and Shigella flexneri in feces by immunomagnetic isolation and polymerase chain reaction.

    abstract::A combination of immunomagnetic separation (IMS) and a polymerase chain reaction (PCR) procedure was used for direct isolation and identification of Shigella dysenteriae type 1 and Shigella flexneri from feces. Immunomagnetic particles were coated with monoclonal antibody MASFB, which is specific for a common epitope ...

    journal_title:Journal of clinical microbiology

    pub_type: 杂志文章

    doi:10.1128/JCM.30.11.2801-2806.1992

    authors: Islam D,Lindberg AA

    更新日期:1992-11-01 00:00:00

  • Name Changes for Fungi of Medical Importance, 2018 to 2019.

    abstract::The current article summarizes recent changes in nomenclature for fungi of medical importance published in the years 2018 to 2019, including new species and revised names for existing ones. Many of the revised names have been widely adopted without further discussion. However, those that concern common pathogens of hu...

    journal_title:Journal of clinical microbiology

    pub_type: 杂志文章,评审

    doi:10.1128/JCM.01811-20

    authors: Borman AM,Johnson EM

    更新日期:2021-01-21 00:00:00

  • Is Chlamydia pneumoniae present in brain lesions of patients with multiple sclerosis?

    abstract::We investigated the presence of Chlamydia pneumoniae in 81 normal and pathological specimens obtained from postmortem brain tissues of patients with multiple sclerosis and with other neurological or nonneurological diseases. The assays used included PCR amplification of all DNA samples in the initial study. Culture an...

    journal_title:Journal of clinical microbiology

    pub_type: 杂志文章

    doi:10.1128/JCM.38.11.4274-4276.2000

    authors: Hammerschlag MR,Ke Z,Lu F,Roblin P,Boman J,Kalman B

    更新日期:2000-11-01 00:00:00

  • Bacteriology of dental abscesses of endodontic origin.

    abstract::Aspirates have been cultured from 10 dental abscesses of endodontic origin, all of which had penetrated beyond the bony alveolus to produce fluctuant swelling. Sampling was by syringe aspiration. Strict anaerobic techniques, including the use of an anaerobic chamber, were used for serial dilution and plating. Randomly...

    journal_title:Journal of clinical microbiology

    pub_type: 杂志文章

    doi:10.1128/JCM.18.4.770-774.1983

    authors: Williams BL,McCann GF,Schoenknecht FD

    更新日期:1983-10-01 00:00:00

  • Diversity of Bipolaris species in clinical samples in the United States and their antifungal susceptibility profiles.

    abstract::A set of 104 isolates from human clinical samples from the United States, morphologically compatible with Bipolaris, were morphologically and molecularly identified through the sequence analysis of the internal transcribed space (ITS) region of the nuclear ribosomal DNA (rDNA). The predominant species was Bipolaris sp...

    journal_title:Journal of clinical microbiology

    pub_type: 杂志文章

    doi:10.1128/JCM.01965-12

    authors: da Cunha KC,Sutton DA,Fothergill AW,Cano J,Gené J,Madrid H,De Hoog S,Crous PW,Guarro J

    更新日期:2012-12-01 00:00:00

  • Clinical significance of viridans streptococci isolated from blood cultures.

    abstract::The clinical significance of viridans streptococci isolated from the blood cultures of 86 patients was determined. Isolates that were significant or suggestive of infection represented only 21% of the cases. Among 54 isolates for which the species was known, Streptococcus sanguis II was the most common. However, a sig...

    journal_title:Journal of clinical microbiology

    pub_type: 杂志文章

    doi:10.1128/JCM.15.4.725-727.1982

    authors: Swenson FJ,Rubin SJ

    更新日期:1982-04-01 00:00:00

  • Multicenter evaluation of five commercial rubella virus immunoglobulin G kits which report in international units per milliliter.

    abstract::In a multicenter study, the consistency of international units expressed by five commercially available rubella virus immunoglobulin G kits was evaluated. The linearity and within-run and between-run precision were determined for each kit. All kits demonstrated good linearity and had within-run and between-run precisi...

    journal_title:Journal of clinical microbiology

    pub_type: 杂志文章

    doi:10.1128/JCM.30.3.633-641.1992

    authors: Dimech W,Bettoli A,Eckert D,Francis B,Hamblin J,Kerr T,Ryan C,Skurrie I

    更新日期:1992-03-01 00:00:00

  • Evaluation of enzyme-linked immunosorbent assay for the serodiagnosis of amebiasis.

    abstract::This report describes the development and evaluation of an enzyme-linked immunosorbent assay (ELISA) for the detection of antibodies to Entamoeba histolytica. Highly sensitive and reproducible results were obtained in antigen-coated plates prepared by air-drying at 37 degrees C. Comparison of the ELISA with indirect f...

    journal_title:Journal of clinical microbiology

    pub_type: 杂志文章

    doi:10.1128/JCM.10.6.778-785.1979

    authors: Yang J,Kennedy MT

    更新日期:1979-12-01 00:00:00

  • Spread of a Salmonella typhimurium clone resistant to expanded-spectrum cephalosporins in three European countries.

    abstract::Twelve Salmonella typhimurium strains resistant to broad-spectrum cephalosporins were isolated from cases of gastroenteritis during 1996 to 1998 in Russia, Hungary, and Greece. Resistance was due to the production of CTX-M-type extended-spectrum beta-lactamases encoded by similar 12-kb plasmids. By pulsed-field gel el...

    journal_title:Journal of clinical microbiology

    pub_type: 杂志文章

    doi:10.1128/JCM.37.11.3774-3777.1999

    authors: Tassios PT,Gazouli M,Tzelepi E,Milch H,Kozlova N,Sidorenko S,Legakis NJ,Tzouvelekis LS

    更新日期:1999-11-01 00:00:00

  • Microbiologic and clinical evidence supporting the role of Aeromonas caviae as a pediatric enteric pathogen.

    abstract::Aeromonas caviae was recovered as the sole potential enteric pathogen from the stools of 14 of 17 symptomatic children (10 younger than 1 year of age) while Aeromonas hydrophila, Aeromonas sobria, and Plesiomonas shigelloides were isolated once each. The infants from whom A. caviae was isolated all presented with a wa...

    journal_title:Journal of clinical microbiology

    pub_type: 杂志文章

    doi:10.1128/JCM.28.5.837-840.1990

    authors: Namdari H,Bottone EJ

    更新日期:1990-05-01 00:00:00

  • Emergence of hepatitis C virus genotype 4: phylogenetic analysis reveals three distinct epidemiological profiles.

    abstract::Hepatitis C virus (HCV) genotype 4 (HCV-4) infection is considered to be difficult to treat and has become increasingly prevalent in European countries, including The Netherlands. Using a molecular epidemiological approach, the present study investigates the genetic diversity and evolutionary origin of HCV-4 in Amster...

    journal_title:Journal of clinical microbiology

    pub_type: 杂志文章

    doi:10.1128/JCM.01146-09

    authors: de Bruijne J,Schinkel J,Prins M,Koekkoek SM,Aronson SJ,van Ballegooijen MW,Reesink HW,Molenkamp R,van de Laar TJ

    更新日期:2009-12-01 00:00:00

  • A serotype V clone is predominant among erythromycin-resistant Streptococcus agalactiae isolates in a southwestern region of Germany.

    abstract::One hundred ninety-three Streptococcus agalactiae isolates of neonatal origin and 146 isolates from adult women were analyzed for macrolide resistance and investigated for clonality. Among erythromycin-resistant isolates, serotype V turned out to be the most frequent. Comparative pulsed-field gel electrophoresis analy...

    journal_title:Journal of clinical microbiology

    pub_type: 杂志文章

    doi:10.1128/jcm.41.5.2166-2169.2003

    authors: von Both U,Ruess M,Mueller U,Fluegge K,Sander A,Berner R

    更新日期:2003-05-01 00:00:00

  • Typing of herpes simplex virus isolates by enzyme-linked immunosorbent assay: comparison between indirect and double-antibody sandwich techniques.

    abstract::Indirect and double-antibody sandwich enzyme-linked immunosorbent assay techniques were compared for serotyping 42 herpes simplex virus isolates. Both procedures gave similar results, which were in complete agreement with those obtained by inhibition of the indirect hemagglutination test. The indirect technique proved...

    journal_title:Journal of clinical microbiology

    pub_type: 杂志文章

    doi:10.1128/JCM.17.5.942-944.1983

    authors: Gerna G,Battaglia M,Revello MG,Gerna MT

    更新日期:1983-05-01 00:00:00

  • Confirmation of the distinct genotype groups within the form species Candida parapsilosis.

    abstract::The DNA relatedness and restriction fragment length polymorphism patterns of whole-cell DNA and the general phenotypic properties of 14 isolates of the form species Candida parapsilosis representing three diverse genetic groups were compared. The data confirm the unrelatedness of the three groups at the species level....

    journal_title:Journal of clinical microbiology

    pub_type: 杂志文章

    doi:10.1128/JCM.36.1.216-218.1998

    authors: Roy B,Meyer SA

    更新日期:1998-01-01 00:00:00

  • Differential blocking of coagulation-activating pathways of Limulus amebocyte lysate.

    abstract::The coagulation of Limulus amebocyte lysate (LAL) can be activated through two pathways, one initiated by endotoxin and the other by beta-glucans. The two pathways join at the step of activation of the proclotting enzyme. We report here that the endotoxin-activated pathway can be differentially inhibited by two method...

    journal_title:Journal of clinical microbiology

    pub_type: 杂志文章

    doi:10.1128/JCM.32.6.1537-1541.1994

    authors: Zhang GH,Baek L,Buchardt O,Koch C

    更新日期:1994-06-01 00:00:00

  • Role of Helicobacter species in Chinese patients with inflammatory bowel disease.

    abstract::Based on 16S rRNA gene PCR, no significant difference was observed in rates of detection of Helicobacter species in intestinal biopsy specimens from 160 Chinese inflammatory bowel disease (IBD) patients (10%) and 80 controls (6.3%). By using a [(13)C]urea breath test, the H. pylori infection rate in 208 Chinese IBD pa...

    journal_title:Journal of clinical microbiology

    pub_type: 杂志文章

    doi:10.1128/JCM.02630-10

    authors: Zhang S,Zhong B,Chao K,Xiao Y,Cui Y,Gao X,Chen B,He Y,Hu P,Chen M,Mitchell HM

    更新日期:2011-05-01 00:00:00