Novel atlas of fiber directions built from ex-vivo diffusion tensor images of porcine hearts.

Abstract:

:Cardiac MR image-based predictive models integrating statistical atlases of heart anatomy and fiber orientations can aid in better diagnosis of cardiovascular disease, a major cause of death worldwide. Such atlases have been built from diffusion tensor (DT) images and can be used in anisotropic models for personalized computational electro-mechanical simulations when the fiber directions from DTI are not available. In this paper, we propose a framework for building the first statistical fiber atlas from high-resolution ex-vivo DT images of porcine hearts. A mean geometry that represents the average cardiac morphology of the dataset was first generated via groupwise registration. Then, the associated average cardiac fiber architecture was mapped out by computing the mean of the transformed DT fields of the subjects. To evaluate the stability of the atlas, we performed leave-one-out cross-validation. The resulting tensor statistics indicate that the fiber atlas could accurately describe the fiber architecture of a healthy pig heart.

authors

Mojica M,Pop M,Sermesant M,Ebrahimi M

doi

10.1016/j.cmpb.2019.105200

subject

Has Abstract

pub_date

2020-04-01 00:00:00

pages

105200

eissn

0169-2607

issn

1872-7565

pii

S0169-2607(19)30395-5

journal_volume

187

pub_type

杂志文章
  • Making heterogeneous medical databases interoperable.

    abstract::The increasing use of computer systems for storing patient information in different hospitals, in different departments within the same hospital, in clinics and even in doctors' surgeries, is creating a problem in terms of the fragmentation of the patient record. The lack of any coordination or standardization in the ...

    journal_title:Computer methods and programs in biomedicine

    pub_type: 杂志文章

    doi:10.1016/0169-2607(94)90080-9

    authors: Williams MH,Hu J

    更新日期:1994-06-01 00:00:00

  • A mobile computer aided system for optic nerve head detection.

    abstract:BACKGROUND AND OBJECTIVE:The detection of optic nerve head (ONH) in retinal fundus images plays a key role in identifying Diabetic Retinopathy (DR) as well as other abnormal conditions in eye examinations. This paper presents a method and its associated software towards the development of an Android smartphone app base...

    journal_title:Computer methods and programs in biomedicine

    pub_type: 杂志文章

    doi:10.1016/j.cmpb.2018.05.004

    authors: Elloumi Y,Akil M,Kehtarnavaz N

    更新日期:2018-08-01 00:00:00

  • A new hybrid intelligent system for accurate detection of Parkinson's disease.

    abstract::Elderly people are commonly affected by Parkinson's disease (PD) which is one of the most common neurodegenerative disorders due to the loss of dopamine-producing brain cells. People with PD's (PWP) may have difficulty in walking, talking or completing other simple tasks. Variety of medications is available to treat P...

    journal_title:Computer methods and programs in biomedicine

    pub_type: 杂志文章

    doi:10.1016/j.cmpb.2014.01.004

    authors: Hariharan M,Polat K,Sindhu R

    更新日期:2014-03-01 00:00:00

  • Non-linear mixed-effects pharmacokinetic/pharmacodynamic modelling in NLME using differential equations.

    abstract::The standard software for non-linear mixed-effect analysis of pharmacokinetic/pharmacodynamic (PK/PD) data is NONMEM while the non-linear mixed-effects package NLME is an alternative as long as the models are fairly simple. We present the nlmeODE package which combines the ordinary differential equation (ODE) solver p...

    journal_title:Computer methods and programs in biomedicine

    pub_type: 杂志文章

    doi:10.1016/j.cmpb.2004.01.001

    authors: Tornøe CW,Agersø H,Jonsson EN,Madsen H,Nielsen HA

    更新日期:2004-10-01 00:00:00

  • Detecting negation and scope in Chinese clinical notes using character and word embedding.

    abstract:BACKGROUND AND OBJECTIVES:Researchers have developed effective methods to index free-text clinical notes into structured database, in which negation detection is a critical but challenging step. In Chinese clinical records, negation detection is particularly challenging because it may depend on upstream Chinese informa...

    journal_title:Computer methods and programs in biomedicine

    pub_type: 杂志文章

    doi:10.1016/j.cmpb.2016.11.009

    authors: Kang T,Zhang S,Xu N,Wen D,Zhang X,Lei J

    更新日期:2017-03-01 00:00:00

  • Virtual MR microscopy for unruptured aneurysm.

    abstract:PURPOSE:This study was performed to evaluate the usefulness of virtual magnetic resonance microscopy (VMRM) for the diagnosis of cerebral aneurysms. MATERIALS AND METHODS:We reviewed 11 patients with unruptured aneurysms confirmed by angiography or surgical therapy. We evaluated the ability of VMRM to represent aneury...

    journal_title:Computer methods and programs in biomedicine

    pub_type: 杂志文章

    doi:10.1016/s0169-2607(01)00142-0

    authors: Kobayashi N,Hosoya T,Adachi M,Haku T,Yamaguchi K

    更新日期:2001-07-01 00:00:00

  • Two-step deep neural network for segmentation of deep white matter hyperintensities in migraineurs.

    abstract:BACKGROUND AND OBJECTIVE:Patients with migraine show an increased presence of white matter hyperintensities (WMHs), especially deep WMHs. Segmentation of small, deep WMHs is a critical issue in managing migraine care. Here, we aim to develop a novel approach to segmenting deep WMHs using deep neural networks based on t...

    journal_title:Computer methods and programs in biomedicine

    pub_type: 杂志文章

    doi:10.1016/j.cmpb.2019.105065

    authors: Hong J,Park BY,Lee MJ,Chung CS,Cha J,Park H

    更新日期:2020-01-01 00:00:00

  • Analysis of the biomechanical behaviour of gastrointestinal regions adopting an experimental and computational approach.

    abstract::An integrated experimental and computational procedure is provided for the evaluation of the biomechanical behaviour that characterizes the pressure-volume response of gastrointestinal regions. The experimental activity pertains to inflation tests performed on specific gastrointestinal conduct segments. Different infl...

    journal_title:Computer methods and programs in biomedicine

    pub_type: 杂志文章

    doi:10.1016/j.cmpb.2013.06.022

    authors: Carniel EL,Rubini A,Frigo A,Natali AN

    更新日期:2014-01-01 00:00:00

  • Automated quantification of renal interstitial fibrosis for computer-aided diagnosis: A comprehensive tissue structure segmentation method.

    abstract::Interstitial fibrosis in renal biopsy samples is a scarring tissue structure that may be visually quantified by pathologists as an indicator to the presence and extent of chronic kidney disease. The standard method of quantification by visual evaluation presents reproducibility issues in the diagnoses. This study prop...

    journal_title:Computer methods and programs in biomedicine

    pub_type: 杂志文章

    doi:10.1016/j.cmpb.2017.12.004

    authors: Tey WK,Kuang YC,Ooi MP,Khoo JJ

    更新日期:2018-03-01 00:00:00

  • Automated detection of conduct disorder and attention deficit hyperactivity disorder using decomposition and nonlinear techniques with EEG signals.

    abstract:BACKGROUND AND OBJECTIVES:Attention deficit hyperactivity disorder (ADHD) is often presented with conduct disorder (CD). There is currently no objective laboratory test or diagnostic method to discern between ADHD and CD, and diagnosis is further made difficult as ADHD is a common neuro-developmental disorder often pre...

    journal_title:Computer methods and programs in biomedicine

    pub_type: 杂志文章

    doi:10.1016/j.cmpb.2021.105941

    authors: Tor HT,Ooi CP,Lim-Ashworth NS,Wei JKE,Jahmunah V,Oh SL,Acharya UR,Fung DSS

    更新日期:2021-01-14 00:00:00

  • Building a national electronic medical record exchange system - experiences in Taiwan.

    abstract::There are currently 501 hospitals and about 20,000 clinics in Taiwan. The National Health Insurance (NHI) system, which is operated by the NHI Administration, uses a single-payer system and covers 99.9% of the nation's total population of 23,000,000. Taiwan's NHI provides people with a high degree of freedom in choosi...

    journal_title:Computer methods and programs in biomedicine

    pub_type: 杂志文章

    doi:10.1016/j.cmpb.2015.04.013

    authors: Li YC,Yen JC,Chiu WT,Jian WS,Syed-Abdul S,Hsu MH

    更新日期:2015-08-01 00:00:00

  • Lung tumor segmentation in PET images using graph cuts.

    abstract::The aim of segmentation of tumor regions in positron emission tomography (PET) is to provide more accurate measurements of tumor size and extension into adjacent structures, than is possible with visual assessment alone and hence improve patient management decisions. We propose a segmentation energy function for the g...

    journal_title:Computer methods and programs in biomedicine

    pub_type: 杂志文章

    doi:10.1016/j.cmpb.2012.10.009

    authors: Ballangan C,Wang X,Fulham M,Eberl S,Feng DD

    更新日期:2013-03-01 00:00:00

  • Adaptive blood glucose control for intensive care applications.

    abstract::Control of blood glucose concentration for patients in intensive care units (ICUs) has been demonstrated to be beneficial in reducing mortality and the incidence of serious complications, for both diabetic and non-diabetic patients. However, the high degree of variability and uncertainty characterizing the physiologic...

    journal_title:Computer methods and programs in biomedicine

    pub_type: 杂志文章

    doi:10.1016/j.cmpb.2012.01.011

    authors: Ottavian M,Barolo M,Zisser H,Dassau E,Seborg DE

    更新日期:2013-02-01 00:00:00

  • Robust estimation of event-related potentials via particle filter.

    abstract:BACKGROUND AND OBJECTIVE:In clinical examinations and brain-computer interface (BCI) research, a short electroencephalogram (EEG) measurement time is ideal. The use of event-related potentials (ERPs) relies on both estimation accuracy and processing time. We tested a particle filter that uses a large number of particle...

    journal_title:Computer methods and programs in biomedicine

    pub_type: 杂志文章

    doi:10.1016/j.cmpb.2015.11.006

    authors: Fukami T,Watanabe J,Ishikawa F

    更新日期:2016-03-01 00:00:00

  • A review of thresholding strategies applied to human chromosome segmentation.

    abstract::Karyotype analysis is a widespread procedure in cytogenetics to assess the presence of genetic defects by the visualization of the structure of chromosomes. The procedure is lengthy and repetitive and an effective automatic analysis would greatly help the cytogeneticist routine work. Still, automatic segmentation and ...

    journal_title:Computer methods and programs in biomedicine

    pub_type: 杂志文章,评审

    doi:10.1016/j.cmpb.2011.12.003

    authors: Poletti E,Zappelli F,Ruggeri A,Grisan E

    更新日期:2012-11-01 00:00:00

  • Profiling intra-patient type I diabetes behaviors.

    abstract:BACKGROUND:The large intra-patient variability in type 1 diabetic patients dramatically reduces the ability to achieve adequate blood glucose control. A novel methodology to identify different blood glucose dynamics profiles will allow therapies to be more accurate and tailored according to patient's conditions and to ...

    journal_title:Computer methods and programs in biomedicine

    pub_type: 杂志文章

    doi:10.1016/j.cmpb.2016.08.022

    authors: Contreras I,Quirós C,Giménez M,Conget I,Vehi J

    更新日期:2016-11-01 00:00:00

  • MSFCN-multiple supervised fully convolutional networks for the osteosarcoma segmentation of CT images.

    abstract:BACKGROUND AND OBJECTIVE:Automatic osteosarcoma tumor segmentation on computed tomography (CT) images is a challenging problem, as tumors have large spatial and structural variabilities. In this study, an automatic tumor segmentation method, which was based on a fully convolutional networks with multiple supervised sid...

    journal_title:Computer methods and programs in biomedicine

    pub_type: 杂志文章

    doi:10.1016/j.cmpb.2017.02.013

    authors: Huang L,Xia W,Zhang B,Qiu B,Gao X

    更新日期:2017-05-01 00:00:00

  • frailtypack: a computer program for the analysis of correlated failure time data using penalized likelihood estimation.

    abstract::Correlated survival outcomes occur quite frequently in the biomedical research. Available software is limited, particularly if we wish to obtain smoothed estimate of the baseline hazard function in the context of random effects model for correlated data. The main objective of this paper is to describe an R package cal...

    journal_title:Computer methods and programs in biomedicine

    pub_type: 杂志文章

    doi:10.1016/j.cmpb.2005.06.010

    authors: Rondeau V,Gonzalez JR

    更新日期:2005-11-01 00:00:00

  • Cutting procedures with improved visual effects and haptic interaction for surgical simulation systems.

    abstract:BACKGROUND AND OBJECTIVES:Surface rendering and physical models with constant parameters are often employed for cutting procedures in conventional surgical simulators. As a consequence, the internal structures of soft tissues cannot be rendered properly and haptic interaction is unrealistic. In order to improve both th...

    journal_title:Computer methods and programs in biomedicine

    pub_type: 杂志文章

    doi:10.1016/j.cmpb.2019.105270

    authors: Shi W,Liu PX,Zheng M

    更新日期:2020-02-01 00:00:00

  • Finite element analysis of torque induced orthodontic bracket slot deformation in various bracket-archwire contact assembly.

    abstract:BACKGROUND AND OBJECTIVES:Orthodontic fixed appliance therapy involves alignment of teeth through the bracket and archwires. The archwire twist (torque) imparts significant forces inside the bracket slot in refining the teeth position at the end of treatment. The objective of this in- silico study was to evaluate the t...

    journal_title:Computer methods and programs in biomedicine

    pub_type: 杂志文章

    doi:10.1016/j.cmpb.2020.105748

    authors: Harikrishnan P,Magesh V,Ajayan AM,JebaSingh DK

    更新日期:2020-12-01 00:00:00

  • Towards noise immune detection of fetal QRS complexes.

    abstract::The noninvasive fetal electrocardiography is a source of more precise information on the fetal heart activity than the measurements based on Doppler ultrasound signals. However, the clinical diagnostic applications of this technique are limited by difficulty with successful detection of small amplitude fetal QRS compl...

    journal_title:Computer methods and programs in biomedicine

    pub_type: 杂志文章

    doi:10.1016/j.cmpb.2009.09.005

    authors: Kotas M,Jezewski J,Matonia A,Kupka T

    更新日期:2010-03-01 00:00:00

  • NLMEM: a new SAS/IML macro for hierarchical nonlinear models.

    abstract::Analysis of longitudinal data is one of the most challenging tasks in statistical modeling. In the analysis, it is often necessary to take into account nonlinear response to a set of parameters of interest and correlation between measurements taken from the same individual. In addition, between- and within-subject var...

    journal_title:Computer methods and programs in biomedicine

    pub_type: 杂志文章

    doi:10.1016/s0169-2607(97)00066-7

    authors: Galecki AT

    更新日期:1998-03-01 00:00:00

  • Computer simulation on fatigue behavior of cemented hip prostheses: a physiological model.

    abstract::This paper is concerned with the investigation on the fatigue failure of implant fixation by numerical approaches. A computer algorithm based on finite element analysis and continuum damage mechanics was proposed to quantify the fatigue damage rate of cement mantle under physiological conditions. In examining the inte...

    journal_title:Computer methods and programs in biomedicine

    pub_type: 杂志文章

    doi:10.1016/j.cmpb.2004.05.004

    authors: Hung JP,Chen JH,Chiang HL,Wu JS

    更新日期:2004-11-01 00:00:00

  • Volumetric interpolation of tomographic sequences for accurate 3D reconstruction of anatomical parts.

    abstract:BACKGROUND AND OBJECTIVE:Tomographic sequences of biomedical images are commonly used to achieve a three-dimensional visualization of the human anatomy. In some cases, the number of images contained in the sequence is limited, e.g., in low-dose computed tomography acquired on neonatal patients, resulting in a coarse an...

    journal_title:Computer methods and programs in biomedicine

    pub_type: 杂志文章

    doi:10.1016/j.cmpb.2020.105525

    authors: Santarelli C,Argenti F,Uccheddu F,Alparone L,Carfagni M

    更新日期:2020-10-01 00:00:00

  • Machine-Learning based model order reduction of a biomechanical model of the human tongue.

    abstract:BACKGROUND AND OBJECTIVES:This paper presents the results of a Machine-Learning based Model Order Reduction (MOR) method applied to a complex 3D Finite Element (FE) biomechanical model of the human tongue, in order to create a Digital Twin Model (DTM) that enables real-time simulations. The DTM is designed for future i...

    journal_title:Computer methods and programs in biomedicine

    pub_type: 杂志文章

    doi:10.1016/j.cmpb.2020.105786

    authors: Calka M,Perrier P,Ohayon J,Grivot-Boichon C,Rochette M,Payan Y

    更新日期:2021-01-01 00:00:00

  • Inspiratory respiratory mechanics estimation by using expiratory data for reverse-triggered breathing cycles.

    abstract:BACKGROUND AND OBJECTIVE:Model-based lung mechanics monitoring can provide clinically useful information for guiding mechanical ventilator treatment in intensive care. However, many methods of measuring lung mechanics are not appropriate for both fully and partially sedated patients, and are unable provide lung mechani...

    journal_title:Computer methods and programs in biomedicine

    pub_type: 杂志文章

    doi:10.1016/j.cmpb.2019.105184

    authors: Howe SL,Chase JG,Redmond DP,Morton SE,Kim KT,Pretty C,Shaw GM,Tawhai MH,Desaive T

    更新日期:2020-04-01 00:00:00

  • A Bayesian approach to estimate evoked potentials.

    abstract::Several approaches, based on different assumptions and with various degree of theoretical sophistication and implementation complexity, have been developed for improving the measurement of evoked potentials (EP) performed by conventional averaging (CA). In many of these methods, one of the major challenges is the expl...

    journal_title:Computer methods and programs in biomedicine

    pub_type: 杂志文章

    doi:10.1016/s0169-2607(01)00175-4

    authors: Sparacino G,Milani S,Arslan E,Cobelli C

    更新日期:2002-06-01 00:00:00

  • Molecular modelling analysis of T219A mutant envelope protein revealed novel virulence enhancing factors in Dengue virus isolated from Kerala state, India.

    abstract::Dengue virus (DENV) is an emerging health threat and its envelope glycoprotein E, is involved in the anchoring and fusion mechanisms. Anchoring followed by conformational changes of E-protein are responsible for the fusion and entry of DENV into host. The variation in the conformation of the E-protein due to mutations...

    journal_title:Computer methods and programs in biomedicine

    pub_type: 杂志文章

    doi:10.1016/j.cmpb.2020.105481

    authors: Kumar YN,Jeyakodi G,Kumar NP,Gunasekaran K,Jambulingam P

    更新日期:2020-10-01 00:00:00

  • Development and applications of an interactive digital filter design program.

    abstract::We have implemented an interactive digital filter design program in the HP 1000 computer at the Department of Electrical Engineering of the University of Washington. This program allows users to design different types of filters interactively with both amplitude and phase responses displayed on graphic devices. The pe...

    journal_title:Computer methods and programs in biomedicine

    pub_type: 杂志文章

    doi:10.1016/0169-2607(85)90058-6

    authors: Woo HW,Kim YM,Tompkins WJ

    更新日期:1985-10-01 00:00:00

  • Entropy generation minimization (EGM) in magneto peristalsis with variable properties.

    abstract:OBJECTIVE AND BACKGROUND:This article featuring the peristaltic transport of viscous material with variable properties (i.e. temperature dependent viscosity and thermal conductivity) through curved configuration. Fluid saturating through porous channel walls of uniform space. Entropy generation consideration here is to...

    journal_title:Computer methods and programs in biomedicine

    pub_type: 杂志文章

    doi:10.1016/j.cmpb.2019.105045

    authors: Farooq S,Hayat T,Khan MI,Alsaedi A

    更新日期:2020-04-01 00:00:00