Abstract:
PREMISE OF THE STUDY:Species formation is an intuitive endpoint of reproductive isolation, but circumscribing taxa that arise during speciation can be difficult because of gene flow, morphological continuity, hybridization or polyploidization, and low sequence variation among newly diverged lineages. Nonetheless, species complexes are ubiquitous, and their classification is essential for understanding how diversity influences ecosystem function. METHODS:We used modern sequencing technology to identify lineages of perennial Claytonia L. and assessed correspondence between genetic lineages and morphological/ecological variation. Subsets of 18 taxa from 63 populations were used for (a) lineage discovery using network and coalescent analyses, (b) leaf shape analyses using elliptical Fourier analysis and ordination, and (c) ecological analyses (soil chemistry, climate) using ANOVA and ordination. KEY RESULTS:Samples mainly aggregated into groups representing each of the previously recognized species in each of the genetic data sets. Compared to the double-digest restriction-site-associated DNA sequencing data set, genome skimming data provided more resolution and further opportunity to probe into patterns of nuclear and chloroplast genome diversity. Morphological and ecological associations are significantly different (albeit intergrading) among the taxa investigated. A new species, Claytonia crawfordii, is described based on morphological data presented here. CONCLUSIONS:Genetic data presented in this study provide some of the first insights into phylogenetic relationships among recently diverged perennial Claytonia and are suggestive of past hybridization among caudicose and tuberous species. Given prior difficulties in understanding species boundaries among newly diverged plant lineages, this case study demonstrates the revolutionary breakthrough for systematics research that high throughput sequencing represents.
journal_name
Am J Botjournal_title
American journal of botanyauthors
Stoughton TR,Kriebel R,Jolles DD,O'Quinn RLdoi
10.1002/ajb2.1061subject
Has Abstractpub_date
2018-03-01 00:00:00pages
536-548issue
3eissn
0002-9122issn
1537-2197journal_volume
105pub_type
杂志文章abstract:PREMISE OF THE STUDY:We isolated and characterized microsatellite markers for the California poppy, Eschscholzia californica, which is an invasive species in central Chile. METHODS AND RESULTS:A total of eight polymorphic and six monomorphic loci were developed for the species. Between one and 12 alleles were observed...
journal_title:American journal of botany
pub_type: 杂志文章
doi:10.3732/ajb.1200076
更新日期:2012-09-01 00:00:00
abstract::Zeuxine gracilis, Zeuxine strateumatica, and Eulophia sinensis are wild orchids with different breeding systems and colonizing abilities. Zeuxine gracilis is an outcrosser with restricted distribution, whereas S. strateumatica is an apomictic colonizer found only in newly available open habitats. Eulophia sinensis is ...
journal_title:American journal of botany
pub_type: 杂志文章
doi:
更新日期:2001-12-01 00:00:00
abstract::Bamboo is considered useful for controlling landslides, but we observed numerous shallow-slope failures in forests of big node bamboo (Phyllostachys nidularia) in Sichuan, China. Therefore, we inventoried landslide occurrence and vegetation type along one valley. To quantify bamboo root anchorage, we performed uprooti...
journal_title:American journal of botany
pub_type: 杂志文章
doi:10.3732/ajb.94.7.1129
更新日期:2007-07-01 00:00:00
abstract:UNLABELLED:• PREMISE OF THE STUDY:The evolution of invasiveness has been extensively studied in natural ecosystems; however, far less is known about the evolution of agricultural invasiveness, despite the major economic impact of weeds on crop productivity. Examining the population structure of recently arisen weeds c...
journal_title:American journal of botany
pub_type: 杂志文章
doi:10.3732/ajb.1400064
更新日期:2014-10-01 00:00:00
abstract:PREMISE OF THE STUDY:Robust markers are required (inter alia) for assessing origins of Calophyllum inophyllum populations on the Bonin Islands, Japan. Therefore, informative expressed sequence tag (EST)-based microsatellite or simple sequence repeat (SSRs) markers in the species were sought. METHODS AND RESULTS:Using ...
journal_title:American journal of botany
pub_type: 杂志文章
doi:10.3732/ajb.1100299
更新日期:2012-01-01 00:00:00
abstract::In an age of rapid global change, it is imperative that we continue to improve our understanding of factors that govern genetic differentiation in plants to inform biologically reasonable predictions for the future and enlighten conservation and restoration practices. In this special issue, we have assembled a set of ...
journal_title:American journal of botany
pub_type:
doi:10.3732/ajb.1500515
更新日期:2016-01-01 00:00:00
abstract::Plant xylem must balance efficient delivery of water to the canopy against protection from air entry into the conduits via air-seeding. We investigated the relationship between tracheid allometry, end wall pitting, safety from air-seeding, and the hydraulic efficiency of conifer wood in order to better understand the ...
journal_title:American journal of botany
pub_type: 杂志文章
doi:10.3732/ajb.93.9.1265
更新日期:2006-09-01 00:00:00
abstract:PREMISE OF THE STUDY:Chloroplast microsatellites were developed in Theobroma cacao to examine the genetic diversity of cacao cultivars in Trinidad and Tobago. METHODS AND RESULTS:Nine polymorphic microsatellites were designed from the chloroplast genomes of two T. cacao accessions. These microsatellites were tested in...
journal_title:American journal of botany
pub_type: 杂志文章
doi:10.3732/ajb.1100306
更新日期:2011-12-01 00:00:00
abstract::Despite their ecological significance, parasitic plants face more conservation challenges than do autotrophic plants. This is especially true for the groups that include weedy or invasive species such as Cuscuta. While approximately half of the Cuscuta (dodders) species may require conservation measures, the genus as ...
journal_title:American journal of botany
pub_type: 杂志文章
doi:10.3732/ajb.0800425
更新日期:2009-09-01 00:00:00
abstract::The fresh weights of suspension cultures of pear (Pyrus communis) and quince (Cydonia oblonga) increased exponentially for 30 to 40 days after subculturing. Transferring pear cultures to media in which quince cultures had grown for 10 days resulted in a 70% inhibition of callus growth. Transferring quince cultures to ...
journal_title:American journal of botany
pub_type: 杂志文章
doi:10.1002/j.1537-2197.1986.tb09673.x
更新日期:1986-01-01 00:00:00
abstract::Inferring basal relationships among vascular plants poses a major challenge to plant systematists. The divergence events that describe these relationships occurred long ago and considerable homoplasy has since accrued for both molecular and morphological characters. A potential solution is to examine phylogenetic anal...
journal_title:American journal of botany
pub_type: 杂志文章
doi:
更新日期:1997-10-01 00:00:00
abstract::Field surveys of cynipid gall-inducer occurrences on Quercus species were conducted in Florida, North Carolina, and Pennsylvania, USA. All cynipids demonstrated strong host species and organ fidelity. One result of this specialization is effective niche partitioning among cynipids. The host-association patterns of the...
journal_title:American journal of botany
pub_type: 杂志文章
doi:
更新日期:1998-08-01 00:00:00
abstract::The pathways of micro- and megagametophyte development in Agave fourcroydes (henequén) and A. angustifolia were studied. We used histology and light microscopy to observe anther ontogeny and ovary differentiation in relation to flower bud size. Both species have the same sexual reproductive strategies and gametophyte ...
journal_title:American journal of botany
pub_type: 杂志文章
doi:
更新日期:2001-11-01 00:00:00
abstract:PREMISE OF THE STUDY:In animal-pollinated plants, autonomous selfing may provide reproductive assurance when pollinators or reproductive partners are limited. Under such circumstances, the contribution of pollinator-mediated seed set to total seed production also may be more variable compared with situations in which p...
journal_title:American journal of botany
pub_type: 杂志文章
doi:10.3732/ajb.1100154
更新日期:2011-11-01 00:00:00
abstract::The effect of microgravity on cellulose synthesis using the model system of Acetobacter xylinum was the subject of recent investigations using The National Aeronautics and Space Administration's Reduced Gravity Laboratory, a modified KC-135 aircraft designed to produce 20 sec of microgravity during the top of a parabo...
journal_title:American journal of botany
pub_type: 杂志文章
doi:
更新日期:1992-11-01 00:00:00
abstract:PREMISE OF THE STUDY:Climate change models for California predict a warmer, drier future, potentially resulting in shorter growing seasons. If phenotypic differences between closely related species currently distributed across a moisture and temperature gradient represent adaptations to their abiotic environment, then ...
journal_title:American journal of botany
pub_type: 杂志文章
doi:10.3732/ajb.1500108
更新日期:2016-01-01 00:00:00
abstract:PREMISE:Within closed-canopy forests, vertical gradients of light and atmospheric CO2 drive variations in leaf carbon isotope ratios, leaf mass per area (LMA), and the micromorphology of leaf epidermal cells. Variations in traits observed in preserved or fossilized leaves could enable inferences of past forest canopy c...
journal_title:American journal of botany
pub_type: 杂志文章
doi:10.1002/ajb2.1523
更新日期:2020-08-01 00:00:00
abstract:PREMISE OF THE STUDY:The lycophyte family Selaginellaceae includes approximately 750 herbaceous species worldwide, with the main species richness in the tropics and subtropics. We recently presented a phylogenetic analysis of Selaginellaceae based on DNA sequence data and, with the phylogeny as a framework, the study d...
journal_title:American journal of botany
pub_type: 杂志文章
doi:10.3732/ajb.1600288
更新日期:2016-12-01 00:00:00
abstract::Tacca, a genus of tropical herbs, possesses near black flowers, conspicuous involucral bracts and whisker-like filiform bracteoles. These features have been assumed to function as a "deceit syndrome" in which reproductive structures resemble decaying organic material attracting flies that facilitate cross-pollination ...
journal_title:American journal of botany
pub_type: 杂志文章
doi:10.3732/ajb.92.3.517
更新日期:2005-03-01 00:00:00
abstract:PREMISE OF THE STUDY:Phylogenetic incongruence between "gene trees" and "species trees" has been widely acknowledged in phylogenetic research. Conflicts may emerge from several processes including paralogy, hybridization, and incomplete lineage sorting. Although phylogenetic incongruence appears common, its impact on m...
journal_title:American journal of botany
pub_type: 杂志文章
doi:10.3732/ajb.1400527
更新日期:2015-04-01 00:00:00
abstract:PREMISE OF THE STUDY:Fern spores are unicellular and haploid, making them a potential model system to study factors that regulate lifespan and mechanisms of aging. Aging rates of nongreen spores were measured to compare longevity characteristics among diverse fern species and test for orthodox response to storage tempe...
journal_title:American journal of botany
pub_type: 杂志文章
doi:10.3732/ajb.1100257
更新日期:2012-04-01 00:00:00
abstract::Phylogenetic analysis of DNA sequences of the chloroplast genes rcbL and ndhf revealed a highly supported clade composed of the families Plantaginaceae, Callitrichaceae, and Hippuridaceae in close association with the model organism Antirrhinum majus and other members of family Scrophulariaceae. Plantago has miniature...
journal_title:American journal of botany
pub_type: 杂志文章
doi:
更新日期:1998-08-01 00:00:00
abstract:UNLABELLED: PREMISE OF THE STUDY:Large-scale population genetics studies are required to investigate the dispersal processes underlying the emergence of Mycosphaerella fijiensis, a fungal pathogen of banana. To this end, we have developed an optimized genotyping procedure combining novel microsatellite markers and a m...
journal_title:American journal of botany
pub_type: 杂志文章
doi:10.3732/ajb.1000295
更新日期:2010-12-01 00:00:00
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journal_title:American journal of botany
pub_type: 杂志文章
doi:10.3732/ajb.1400234
更新日期:2015-01-01 00:00:00
abstract:UNLABELLED: PREMISE OF THE STUDY:Fuchsia (Onagraceae) anthers, pollen, and an ornithophilous Fuchsia-like flower from an earliest Miocene lacustrine diatomite deposit at Foulden Maar, southern New Zealand confirm a long record for Fuchsia in New Zealand and probably an equally long history for its distinctive honeyeat...
journal_title:American journal of botany
pub_type: 杂志文章
doi:10.3732/ajb.1200643
更新日期:2013-10-01 00:00:00
abstract::Understanding the role of geography and ecology in species divergence is central to the study of evolutionary diversification. We used climatic, geographic, and biological data from nine wild Andean tomato species to describe each species' ecological niche and to evaluate the likely ecological and geographical modes o...
journal_title:American journal of botany
pub_type: 杂志文章
doi:10.3732/ajb.0900216
更新日期:2010-04-01 00:00:00
abstract::Tropical forest plants are known to be pollinated by a diverse array of animals. Here we report on the pollination of a woody climber species, Uvaria elmeri (Annonaceae), by cockroaches in a lowland mixed-dipterocarp forest in Sarawak, Malaysia. To the best of our knowledge, this is the first report of pollination by ...
journal_title:American journal of botany
pub_type: 杂志文章
doi:
更新日期:1997-02-01 00:00:00
abstract::Cleistogamous capitula formed by Centaurea melitensis display a number of morphological and functional changes with respect to chasmogamous capitula that ensure self-fertilization. Because no studies have hitherto addressed the evolution of cleistogamy in Asteraceae, it was considered useful to ascertain whether these...
journal_title:American journal of botany
pub_type: 杂志文章
doi:
更新日期:2000-07-01 00:00:00
abstract::Xylem of the orchids studied provided unusually favorable material to demonstrate how conductive tissue evolves in monocotyledons. In the end walls of tracheary elements of many Orchidaceae, remnants of pit membranes were observed with scanning electron microscopy and minimally destructive methods. The full range from...
journal_title:American journal of botany
pub_type: 杂志文章
doi:10.3732/ajb.93.7.963
更新日期:2006-07-01 00:00:00
abstract:PREMISE OF THE STUDY:Giant cacti species possess long cylindrical stems that store massive amounts of water and other resources to draw on for photosynthesis, growth, and reproduction during hot and dry conditions. Across all giant cacti taxa, stem photosynthetic surface area to volume ratio (S:V) varies by several fol...
journal_title:American journal of botany
pub_type: 杂志文章
doi:10.1002/ajb2.1166
更新日期:2018-10-01 00:00:00