Benthic microbial communities of coastal terrestrial and ice shelf Antarctic meltwater ponds.

Abstract:

:The numerous perennial meltwater ponds distributed throughout Antarctica represent diverse and productive ecosystems central to the ecological functioning of the surrounding ultra oligotrophic environment. The dominant taxa in the pond benthic communities have been well described however, little is known regarding their regional dispersal and local drivers to community structure. The benthic microbial communities of 12 meltwater ponds in the McMurdo Sound of Antarctica were investigated to examine variation between pond microbial communities and their biogeography. Geochemically comparable but geomorphologically distinct ponds were selected from Bratina Island (ice shelf) and Miers Valley (terrestrial) (<40 km between study sites), and community structure within ponds was compared using DNA fingerprinting and pyrosequencing of 16S rRNA gene amplicons. More than 85% of total sequence reads were shared between pooled benthic communities at different locations (OTU0.05), which in combination with favorable prevailing winds suggests aeolian regional distribution. Consistent with previous findings Proteobacteria and Bacteroidetes were the dominant phyla representing over 50% of total sequences; however, a large number of other phyla (21) were also detected in this ecosystem. Although dominant Bacteria were ubiquitous between ponds, site and local selection resulted in heterogeneous community structures and with more than 45% of diversity being pond specific. Potassium was identified as the most significant contributing factor to the cosmopolitan community structure and aluminum to the location unique community based on a BEST analysis (Spearman's correlation coefficient of 0.632 and 0.806, respectively). These results indicate that the microbial communities in meltwater ponds are easily dispersed regionally and that the local geochemical environment drives the ponds community structure.

journal_name

Front Microbiol

authors

Archer SD,McDonald IR,Herbold CW,Lee CK,Cary CS

doi

10.3389/fmicb.2015.00485

subject

Has Abstract

pub_date

2015-05-27 00:00:00

pages

485

issn

1664-302X

journal_volume

6

pub_type

杂志文章
  • Simultaneous Discovery of Positive and Negative Interactions Among Rhizosphere Bacteria Using Microwell Recovery Arrays.

    abstract::Understanding microbe-microbe interactions is critical to predict microbiome function and to construct communities for desired outcomes. Investigation of these interactions poses a significant challenge due to the lack of suitable experimental tools available. Here we present the microwell recovery array (MRA), a new ...

    journal_title:Frontiers in microbiology

    pub_type: 杂志文章

    doi:10.3389/fmicb.2020.601788

    authors: Barua N,Herken AM,Stern KR,Reese S,Powers RL,Morrell-Falvey JL,Platt TG,Hansen RR

    更新日期:2021-01-05 00:00:00

  • Genetic Platforms of blaCTX-M in Carbapenemase-Producing Strains of K. pneumoniae Isolated in Chile.

    abstract::Objective: To elucidate whether the genetic platforms of blaCTX-M contribute to the phenotypes of multi-drug-resistance (MDR) in the first carbapenemase-producing K. pneumoniae strains isolated in Chile. Method: Twenty-two carbapenemase-producing K. pneumoniae strains isolated from different Chilean patients and hospi...

    journal_title:Frontiers in microbiology

    pub_type: 杂志文章

    doi:10.3389/fmicb.2018.00324

    authors: Carrasco-Anabalón S,Vera-Leiva A,Quezada-Aguiluz M,Morales-Rivera MF,Lima CA,Fernández J,Ulloa S,Domínguez M,González-Rocha G,Bello-Toledo H

    更新日期:2018-03-06 00:00:00

  • Is Penicillin Plus Gentamicin Synergistic Against Sessile Group B Streptococcal Isolates? An in Vivo Study With an Experimental Model of Foreign-Body Infection.

    abstract::The rate of invasive group B Streptococcus (GBS) infections is steadily increasing, particularly in older persons and in adults with diabetes and other comorbidities. This population includes persons with a foreign body (e.g., who have undergone arthroplasty). In a rat tissue cage model, we evaluated the efficacy of a...

    journal_title:Frontiers in microbiology

    pub_type: 杂志文章

    doi:10.3389/fmicb.2018.00919

    authors: Ruppen C,Mercier T,Grandgirard D,Leib SL,El Haj C,Murillo O,Decosterd L,Sendi P

    更新日期:2018-05-15 00:00:00

  • Atypical Porcine Pestivirus as a Novel Type of Pestivirus in Pigs in China.

    abstract::Pestiviruses are highly variable RNA viruses. A growing number of novel pestiviruses has been discovered in domestic and wild species in the last two decades. Recently, a novel atypical porcine pestivirus (APPV) linked with the development of congenital tremor (CT) in neonatal pigs was described in Europe and the Amer...

    journal_title:Frontiers in microbiology

    pub_type: 杂志文章

    doi:10.3389/fmicb.2017.00862

    authors: Yuan J,Han Z,Li J,Huang Y,Yang J,Ding H,Zhang J,Zhu M,Zhang Y,Liao J,Zhao M,Chen J

    更新日期:2017-05-11 00:00:00

  • Total Arsenic, pH, and Sulfate Are the Main Environmental Factors Affecting the Microbial Ecology of the Water and Sediments in Hulun Lake, China.

    abstract::Bacteria have the metabolic potential to produce a diverse array of secondary metabolites, which have important roles in biogeochemical cycling processes. However, for Hulun Lake and the rivers that enter into it, the bacterial community structures and their effects have not previously been widely studied, limiting ou...

    journal_title:Frontiers in microbiology

    pub_type: 杂志文章

    doi:10.3389/fmicb.2020.548607

    authors: Shang Y,Wu X,Wei Q,Dou H,Wang X,Chen J,Zhang H,Ma S,Zhang H

    更新日期:2020-09-24 00:00:00

  • Analysis of a Marseillevirus Transcriptome Reveals Temporal Gene Expression Profile and Host Transcriptional Shift.

    abstract::Marseilleviruses comprise a family of large double-stranded DNA viruses belonging to the proposed order "Megavirales." These viruses have a circular genome of ∼370 kbp, coding hundreds of genes. Over a half of their genes are associated with AT-rich putative promoter motifs, which have been demonstrated to be importan...

    journal_title:Frontiers in microbiology

    pub_type: 杂志文章

    doi:10.3389/fmicb.2020.00651

    authors: Rodrigues RAL,Louazani AC,Picorelli A,Oliveira GP,Lobo FP,Colson P,La Scola B,Abrahão JS

    更新日期:2020-04-14 00:00:00

  • Microbial Keratinase: Next Generation Green Catalyst and Prospective Applications.

    abstract::The search for novel renewable products over synthetics hallmarked this decade and those of the recent past. Most economies that are prospecting on biodiversity for improved bio-economy favor renewable resources over synthetics for the potential opportunity they hold. However, this field is still nascent as the bulk o...

    journal_title:Frontiers in microbiology

    pub_type: 杂志文章,评审

    doi:10.3389/fmicb.2020.580164

    authors: Nnolim NE,Udenigwe CC,Okoh AI,Nwodo UU

    更新日期:2020-12-18 00:00:00

  • The Rho Termination Factor of Clostridium botulinum Contains a Prion-Like Domain with a Highly Amyloidogenic Core.

    abstract::Prion-like proteins can switch between a soluble intrinsically disordered conformation and a highly ordered amyloid assembly. This conformational promiscuity is encoded in specific sequence regions, known as prion domains (PrDs). Prions are best known as the causative factors of neurological diseases in mammals. Howev...

    journal_title:Frontiers in microbiology

    pub_type: 杂志文章

    doi:10.3389/fmicb.2015.01516

    authors: Pallarès I,Iglesias V,Ventura S

    更新日期:2016-01-07 00:00:00

  • The Importance of H in Particulate Organic Matter Stoichiometry, Export and Energy Flow.

    abstract::The discipline of marine ecological stoichiometry has progressed rapidly over the past two decades, and continues to be at the forefront of microbial oceanography. Most of this effort has been focused on the elements carbon (C) and nitrogen (N), and to a lesser extent phosphorus (P), with little consideration of hydro...

    journal_title:Frontiers in microbiology

    pub_type: 杂志文章,评审

    doi:10.3389/fmicb.2017.00826

    authors: Karl DM,Grabowski E

    更新日期:2017-05-09 00:00:00

  • Preliminary Transcriptome Analysis of Mature Biofilm and Planktonic Cells of Salmonella Enteritidis Exposure to Acid Stress.

    abstract::Salmonella has emerged as a well-recognized food-borne pathogen, with many strains able to form biofilms and thus cause cross-contamination in food processing environments where acid-based disinfectants are widely encountered. In the present study, RNA sequencing was employed to establish complete transcriptome profil...

    journal_title:Frontiers in microbiology

    pub_type: 杂志文章

    doi:10.3389/fmicb.2017.01861

    authors: Jia K,Wang G,Liang L,Wang M,Wang H,Xu X

    更新日期:2017-09-26 00:00:00

  • Biocontrol Potentials of Antimicrobial Peptide Producing Bacillus Species: Multifaceted Antagonists for the Management of Stem Rot of Carnation Caused by Sclerotinia sclerotiorum.

    abstract::Bacillus species are widely exploited as biocontrol agents because of their efficiency in impeding various plant pathogens with multifaceted approach. In this study, Bacillus species were isolated from rhizosphere of various plants viz., carnations, cotton, turmeric, and bananas in Tamil Nadu state of India. Their pot...

    journal_title:Frontiers in microbiology

    pub_type: 杂志文章

    doi:10.3389/fmicb.2017.00446

    authors: Vinodkumar S,Nakkeeran S,Renukadevi P,Malathi VG

    更新日期:2017-03-24 00:00:00

  • Chlamydia trachomatis Plasmid Protein pORF5 Up-Regulates ZFAS1 to Promote Host Cell Survival via MAPK/p38 Pathway.

    abstract::Long non-coding RNAs (lncRNAs) have been demonstrated to play essential roles in many diseases. However, few studies have shown that lncRNAs take part in the pathogenesis of Chlamydia trachomatis (C. trachomatis). Here, we used a lncRNA microarray to detect the global lncRNA expression profiles in HeLa cells transfect...

    journal_title:Frontiers in microbiology

    pub_type: 杂志文章

    doi:10.3389/fmicb.2020.593295

    authors: Wen Y,Chen H,Luo F,Zhao L,Shu M,Su S,Zhao Y,Huang Q,Li Z

    更新日期:2020-12-17 00:00:00

  • Antimicrobial and Synergistic Activity of 2,2',4-Trihydroxybenzophenone Against Bacterial Pathogens of Poultry.

    abstract::In poultry farming, the spread of bacterial pathogens results in disease outbreaks causing significant economic losses to this industry. Many of these pathogenic bacteria are zoonotic and have a substantial impact on public health. Antimicrobials are essential for the prevention and treatment of these bacterial infect...

    journal_title:Frontiers in microbiology

    pub_type: 杂志文章

    doi:10.3389/fmicb.2019.00490

    authors: Aranda MIR,Gómez GAT,de Barros M,Dos Santos MH,de Oliveira LL,Pena JL,Moreira MAS

    更新日期:2019-03-20 00:00:00

  • SecA is required for membrane targeting of the cell division protein DivIVA in vivo.

    abstract::The conserved protein DivIVA is involved in different morphogenetic processes in Gram-positive bacteria. In Bacillus subtilis, the protein localizes to the cell division site and cell poles, and functions as a scaffold for proteins that regulate division site selection, and for proteins that are required for sporulati...

    journal_title:Frontiers in microbiology

    pub_type: 杂志文章

    doi:10.3389/fmicb.2014.00058

    authors: Halbedel S,Kawai M,Breitling R,Hamoen LW

    更新日期:2014-02-14 00:00:00

  • Differential Growth of Francisella tularensis, Which Alters Expression of Virulence Factors, Dominant Antigens, and Surface-Carbohydrate Synthases, Governs the Apparent Virulence of Ft SchuS4 to Immunized Animals.

    abstract::The gram-negative bacterium Francisella tularensis (Ft) is both a potential biological weapon and a naturally occurring microbe that survives in arthropods, fresh water amoeba, and mammals with distinct phenotypes in various environments. Previously, we used a number of measurements to characterize Ft grown in Brain-H...

    journal_title:Frontiers in microbiology

    pub_type: 杂志文章

    doi:10.3389/fmicb.2017.01158

    authors: Holland KM,Rosa SJ,Kristjansdottir K,Wolfgeher D,Franz BJ,Zarrella TM,Kumar S,Sunagar R,Singh A,Bakshi CS,Namjoshi P,Barry EM,Sellati TJ,Kron SJ,Gosselin EJ,Reed DS,Hazlett KRO

    更新日期:2017-06-22 00:00:00

  • A Novel Natural Antimicrobial Can Reduce the in vitro and in vivo Pathogenicity of T6SS Positive Campylobacter jejuni and Campylobacter coli Chicken Isolates.

    abstract::Human campylobacteriosis is considered one of the most common foodborne diseases worldwide with poultry identified as the main source of infection accounting for 50-80% of human cases. Highly virulent Campylobacter spp., positive for the Type VI secretion system (T6SS), which have an increased ability to adhere to and...

    journal_title:Frontiers in microbiology

    pub_type: 杂志文章

    doi:10.3389/fmicb.2018.02139

    authors: Sima F,Stratakos AC,Ward P,Linton M,Kelly C,Pinkerton L,Stef L,Gundogdu O,Lazar V,Corcionivoschi N

    更新日期:2018-09-07 00:00:00

  • Unexpected Transcripts in Tn7 orf19.2646 C. albicans Mutant Lead to Low Fungal Burden Phenotype In vivo.

    abstract::The commensal fungus Candida albicans is the major cause of fungal systemic infection in immuno-compromised patients, with a mortality rate approaching 50% in the case of bloodstream infections. There is therefore a clear need to better understand fungal biology during infection to improve treatment. One of the partic...

    journal_title:Frontiers in microbiology

    pub_type: 杂志文章

    doi:10.3389/fmicb.2017.00873

    authors: Pierrehumbert A,Ischer F,Coste AT

    更新日期:2017-05-16 00:00:00

  • Comparative Proteomics of Meat Spoilage Bacteria Predicts Drivers for Their Coexistence on Modified Atmosphere Packaged Meat.

    abstract::Besides intrinsic and extrinsic factors such as antagonism for organic substrates or temperature, the storage atmosphere of meat has a high influence on the development of its initial microbiota. Specific modified atmospheres (MAs) selectively suppress growth of aerobic and anaerobic bacteria, thus reshaping the initi...

    journal_title:Frontiers in microbiology

    pub_type: 杂志文章

    doi:10.3389/fmicb.2020.00209

    authors: Kolbeck S,Ludwig C,Meng C,Hilgarth M,Vogel RF

    更新日期:2020-02-14 00:00:00

  • Agricultural Freshwater Pond Supports Diverse and Dynamic Bacterial and Viral Populations.

    abstract::Agricultural ponds have a great potential as a means of capture and storage of water for irrigation. However, pond topography (small size, shallow depth) leaves them susceptible to environmental, agricultural, and anthropogenic exposures that may influence microbial dynamics. Therefore, the aim of this project was to ...

    journal_title:Frontiers in microbiology

    pub_type: 杂志文章

    doi:10.3389/fmicb.2018.00792

    authors: Chopyk J,Allard S,Nasko DJ,Bui A,Mongodin EF,Sapkota AR

    更新日期:2018-04-24 00:00:00

  • Biochemical Components Associated With Microbial Community Shift During the Pile-Fermentation of Primary Dark Tea.

    abstract::Primary dark tea is used as raw material for compressed dark tea, such as Fu brick tea, Hei brick tea, Hua brick tea, and Qianliang tea. Pile-fermentation is the key process for the formation of the characteristic properties of primary dark tea, during which the microorganism plays an important role. In this study, th...

    journal_title:Frontiers in microbiology

    pub_type: 杂志文章

    doi:10.3389/fmicb.2018.01509

    authors: Li Q,Chai S,Li Y,Huang J,Luo Y,Xiao L,Liu Z

    更新日期:2018-07-10 00:00:00

  • Anti-outer Membrane Vesicle Antibodies Increase Antibiotic Sensitivity of Pan-Drug-Resistant Acinetobacter baumannii.

    abstract::Acinetobacter baumannii often causes serious nosocomial infections. Because of its serious drug resistance problems, complex drug resistance mechanism, and rapid adaptation to antibiotics, it often shows pan-drug resistance and high fatality rates, which represent great challenges for clinical treatment. Therefore, id...

    journal_title:Frontiers in microbiology

    pub_type: 杂志文章

    doi:10.3389/fmicb.2019.01379

    authors: Huang W,Zhang Q,Li W,Chen Y,Shu C,Li Q,Zhou J,Ye C,Bai H,Sun W,Yang X,Ma Y

    更新日期:2019-06-18 00:00:00

  • A modular method for the extraction of DNA and RNA, and the separation of DNA pools from diverse environmental sample types.

    abstract::A method for the extraction of nucleic acids from a wide range of environmental samples was developed. This method consists of several modules, which can be individually modified to maximize yields in extractions of DNA and RNA or separations of DNA pools. Modules were designed based on elaborate tests, in which permu...

    journal_title:Frontiers in microbiology

    pub_type: 杂志文章

    doi:10.3389/fmicb.2015.00476

    authors: Lever MA,Torti A,Eickenbusch P,Michaud AB,Šantl-Temkiv T,Jørgensen BB

    更新日期:2015-05-19 00:00:00

  • The Biotherapeutic Potential of Lactobacillus reuteri Characterized Using a Target-Specific Selection Process.

    abstract::A growing body of clinical and experimental data supports the view that the efficacy of probiotics is strain-specific and restricted to particular pathological conditions, which means that newly isolated probiotic strains need to be targeted to a specific disease. Following national and international guidelines, we us...

    journal_title:Frontiers in microbiology

    pub_type: 杂志文章

    doi:10.3389/fmicb.2020.00532

    authors: Sagheddu V,Uggeri F,Belogi L,Remollino L,Brun P,Bernabè G,Moretti G,Porzionato A,Morelli L,Castagliuolo I,Elli M

    更新日期:2020-04-15 00:00:00

  • Effect of Bifidobacterium breve in Combination With Different Antibiotics on Clostridium difficile.

    abstract::While combinations of probiotics with antibiotics have exhibited beneficial and adverse effects in the treatment of Clostridium difficile infection (CDI), no substantive explanation has been provided for these effects. In this study, C. difficile ATCC 9689 (CD) was treated with Bifidobacterium breve (YH68) in combinat...

    journal_title:Frontiers in microbiology

    pub_type: 杂志文章

    doi:10.3389/fmicb.2018.02953

    authors: Yang J,Yang H

    更新日期:2018-12-04 00:00:00

  • Genetic and Toxigenic Variability within Aspergillus flavus Population Isolated from Maize in Two Diverse Environments in Kenya.

    abstract::Aspergillus flavus is the main producer of carcinogenic aflatoxins in agricultural commodities such as maize. This fungus occurs naturally on crops, and produces aflatoxins when environmental conditions are favorable. The aim of this study is to analyse the genetic variability among 109 A. flavus isolates previously r...

    journal_title:Frontiers in microbiology

    pub_type: 杂志文章

    doi:10.3389/fmicb.2018.00057

    authors: Okoth S,De Boevre M,Vidal A,Diana Di Mavungu J,Landschoot S,Kyallo M,Njuguna J,Harvey J,De Saeger S

    更新日期:2018-01-26 00:00:00

  • Antibiotic Resistance Patterns of Pseudomonas spp. Isolated from the River Danube.

    abstract::Spread and persistence of antibiotic resistance pose a severe threat to human health, yet there is still lack of knowledge about reservoirs of antibiotic resistant bacteria in the environment. We took the opportunity of the Joint Danube Survey 3 (JDS3), the world's biggest river research expedition of its kind in 2013...

    journal_title:Frontiers in microbiology

    pub_type: 杂志文章

    doi:10.3389/fmicb.2016.00586

    authors: Kittinger C,Lipp M,Baumert R,Folli B,Koraimann G,Toplitsch D,Liebmann A,Grisold AJ,Farnleitner AH,Kirschner A,Zarfel G

    更新日期:2016-05-03 00:00:00

  • Antibiotic Resistance: Moving From Individual Health Norms to Social Norms in One Health and Global Health.

    abstract::Antibiotic resistance is a problem for human health, and consequently, its study had been traditionally focused toward its impact for the success of treating human infections in individual patients (individual health). Nevertheless, antibiotic-resistant bacteria and antibiotic resistance genes are not confined only to...

    journal_title:Frontiers in microbiology

    pub_type: 杂志文章,评审

    doi:10.3389/fmicb.2020.01914

    authors: Hernando-Amado S,Coque TM,Baquero F,Martínez JL

    更新日期:2020-08-28 00:00:00

  • Metatranscriptomic and functional metagenomic analysis of methylphosphonate utilization by marine bacteria.

    abstract::Aerobic degradation of methylphosphonate (MPn) by marine bacterioplankton has been hypothesized to contribute significantly to the ocean's methane supersaturation, yet little is known about MPn utilization by marine microbes. To identify the microbial taxa and metabolic functions associated with MPn-driven methane pro...

    journal_title:Frontiers in microbiology

    pub_type: 杂志文章

    doi:10.3389/fmicb.2013.00340

    authors: Martínez A,Ventouras LA,Wilson ST,Karl DM,Delong EF

    更新日期:2013-11-26 00:00:00

  • Identity and mechanisms of alkane-oxidizing metalloenzymes from deep-sea hydrothermal vents.

    abstract::Six aerobic alkanotrophs (organism that can metabolize alkanes as their sole carbon source) isolated from deep-sea hydrothermal vents were characterized using the radical clock substrate norcarane to determine the metalloenzyme and reaction mechanism used to oxidize alkanes. The organisms studied were Alcanivorax sp. ...

    journal_title:Frontiers in microbiology

    pub_type: 杂志文章

    doi:10.3389/fmicb.2013.00109

    authors: Bertrand EM,Keddis R,Groves JT,Vetriani C,Austin RN

    更新日期:2013-05-10 00:00:00

  • 1H-NMR-Based Endometabolome Profiles of Burkholderia cenocepacia Clonal Variants Retrieved from a Cystic Fibrosis Patient during Chronic Infection.

    abstract::During cystic fibrosis (CF) chronic lung infections, bacteria of the Burkholderia cepacia complex (Bcc) are exposed for several years to a stressful and changing environment. These environmental challenges results in genetic changes of the initial infecting strain with the consequent diversification of genotypes and p...

    journal_title:Frontiers in microbiology

    pub_type: 杂志文章

    doi:10.3389/fmicb.2016.02024

    authors: Moreira AS,Lourenço AB,Sá-Correia I

    更新日期:2016-12-20 00:00:00