iACP-GAEnsC: Evolutionary genetic algorithm based ensemble classification of anticancer peptides by utilizing hybrid feature space.

Abstract:

:Cancer is a fatal disease, responsible for one-quarter of all deaths in developed countries. Traditional anticancer therapies such as, chemotherapy and radiation, are highly expensive, susceptible to errors and ineffective techniques. These conventional techniques induce severe side-effects on human cells. Due to perilous impact of cancer, the development of an accurate and highly efficient intelligent computational model is desirable for identification of anticancer peptides. In this paper, evolutionary intelligent genetic algorithm-based ensemble model, 'iACP-GAEnsC', is proposed for the identification of anticancer peptides. In this model, the protein sequences are formulated, using three different discrete feature representation methods, i.e., amphiphilic Pseudo amino acid composition, g-Gap dipeptide composition, and Reduce amino acid alphabet composition. The performance of the extracted feature spaces are investigated separately and then merged to exhibit the significance of hybridization. In addition, the predicted results of individual classifiers are combined together, using optimized genetic algorithm and simple majority technique in order to enhance the true classification rate. It is observed that genetic algorithm-based ensemble classification outperforms than individual classifiers as well as simple majority voting base ensemble. The performance of genetic algorithm-based ensemble classification is highly reported on hybrid feature space, with an accuracy of 96.45%. In comparison to the existing techniques, 'iACP-GAEnsC' model has achieved remarkable improvement in terms of various performance metrics. Based on the simulation results, it is observed that 'iACP-GAEnsC' model might be a leading tool in the field of drug design and proteomics for researchers.

journal_name

Artif Intell Med

authors

Akbar S,Hayat M,Iqbal M,Jan MA

doi

10.1016/j.artmed.2017.06.008

subject

Has Abstract

pub_date

2017-06-01 00:00:00

pages

62-70

eissn

0933-3657

issn

1873-2860

pii

S0933-3657(17)30199-9

journal_volume

79

pub_type

杂志文章
  • Brain-controlled applications using dynamic P300 speller matrices.

    abstract:OBJECTIVES:Access to the world wide web and multimedia content is an important aspect of life. We present a web browser and a multimedia user interface adapted for control with a brain-computer interface (BCI) which can be used by severely motor impaired persons. METHODS:The web browser dynamically determines the most...

    journal_title:Artificial intelligence in medicine

    pub_type: 杂志文章

    doi:10.1016/j.artmed.2014.12.001

    authors: Halder S,Pinegger A,Käthner I,Wriessnegger SC,Faller J,Pires Antunes JB,Müller-Putz GR,Kübler A

    更新日期:2015-01-01 00:00:00

  • Finding temporal patterns--a set-based approach.

    abstract::We created an inference engine and query language for expressing temporal patterns in data. The patterns are represented by using temporally-ordered sets of data objects. Patterns are elaborated by reference to new objects inferred from original data, and by interlocking temporal and other relationships among sets of ...

    journal_title:Artificial intelligence in medicine

    pub_type: 杂志文章

    doi:10.1016/0933-3657(94)90066-3

    authors: Wade TD,Byrns PJ,Steiner JF,Bondy J

    更新日期:1994-06-01 00:00:00

  • Extracting rules from pruned networks for breast cancer diagnosis.

    abstract::A new algorithm for neural network pruning is presented. Using this algorithm, networks with small number of connections and high accuracy rates for breast cancer diagnosis are obtained. We will then describe how rules can be extracted from a pruned network by considering only a finite number of hidden unit activation...

    journal_title:Artificial intelligence in medicine

    pub_type: 杂志文章

    doi:10.1016/0933-3657(95)00019-4

    authors: Setiono R

    更新日期:1996-02-01 00:00:00

  • Functional proteomic pattern identification under low dose ionizing radiation.

    abstract:OBJECTIVE:High dose radiation has been well known for increasing the risk of carcinogenesis. However, the understanding of biological effects of low dose radiation is limited. Low dose radiation is reported to affect several signaling pathways including deoxyribonucleic acid repair, survival, cell cycle, cell growth, a...

    journal_title:Artificial intelligence in medicine

    pub_type: 杂志文章

    doi:10.1016/j.artmed.2010.04.001

    authors: Kim YB,Yang CR,Gao J

    更新日期:2010-07-01 00:00:00

  • Heart murmur detection based on wavelet transformation and a synergy between artificial neural network and modified neighbor annealing methods.

    abstract::Early recognition of heart disease plays a vital role in saving lives. Heart murmurs are one of the common heart problems. In this study, Artificial Neural Network (ANN) is trained with Modified Neighbor Annealing (MNA) to classify heart cycles into normal and murmur classes. Heart cycles are separated from heart soun...

    journal_title:Artificial intelligence in medicine

    pub_type: 杂志文章

    doi:10.1016/j.artmed.2017.05.005

    authors: Eslamizadeh G,Barati R

    更新日期:2017-05-01 00:00:00

  • Temporal similarity measures for querying clinical workflows.

    abstract:OBJECTIVE:In this paper, we extend a preliminary proposal and discuss in a deeper and more formal way an approach to evaluate temporal similarity between clinical workflow cases (i.e., executions of clinical processes). More precisely, we focus on (i) the representation of clinical processes by using a temporal concept...

    journal_title:Artificial intelligence in medicine

    pub_type: 杂志文章

    doi:10.1016/j.artmed.2008.07.013

    authors: Combi C,Gozzi M,Oliboni B,Juarez JM,Marin R

    更新日期:2009-05-01 00:00:00

  • Measuring the effects of confounders in medical supervised classification problems: the Confounding Index (CI).

    abstract::Over the years, there has been growing interest in using machine learning techniques for biomedical data processing. When tackling these tasks, one needs to bear in mind that biomedical data depends on a variety of characteristics, such as demographic aspects (age, gender, etc.) or the acquisition technology, which mi...

    journal_title:Artificial intelligence in medicine

    pub_type: 杂志文章

    doi:10.1016/j.artmed.2020.101804

    authors: Ferrari E,Retico A,Bacciu D

    更新日期:2020-03-01 00:00:00

  • Multichannel mixture models for time-series analysis and classification of engagement with multiple health services: An application to psychology and physiotherapy utilization patterns after traffic accidents.

    abstract:BACKGROUND:Motor vehicle accidents (MVA) represent a significant burden on health systems globally. Tens of thousands of people are injured in Australia every year and may experience significant disability. Associated economic costs are substantial. There is little literature on the health service utilization patterns ...

    journal_title:Artificial intelligence in medicine

    pub_type: 杂志文章

    doi:10.1016/j.artmed.2020.101997

    authors: Esmaili N,Buchlak QD,Piccardi M,Kruger B,Girosi F

    更新日期:2021-01-01 00:00:00

  • Classifying free-text triage chief complaints into syndromic categories with natural language processing.

    abstract:OBJECTIVE:Develop and evaluate a natural language processing application for classifying chief complaints into syndromic categories for syndromic surveillance. INTRODUCTION:Much of the input data for artificial intelligence applications in the medical field are free-text patient medical records, including dictated med...

    journal_title:Artificial intelligence in medicine

    pub_type: 杂志文章

    doi:10.1016/j.artmed.2004.04.001

    authors: Chapman WW,Christensen LM,Wagner MM,Haug PJ,Ivanov O,Dowling JN,Olszewski RT

    更新日期:2005-01-01 00:00:00

  • Bayesian network multi-classifiers for protein secondary structure prediction.

    abstract::Successful secondary structure predictions provide a starting point for direct tertiary structure modelling, and also can significantly improve sequence analysis and sequence-structure threading for aiding in structure and function determination. Hence the improvement of predictive accuracy of the secondary structure ...

    journal_title:Artificial intelligence in medicine

    pub_type: 杂志文章

    doi:10.1016/j.artmed.2004.01.009

    authors: Robles V,Larrañaga P,Peña JM,Menasalvas E,Pérez MS,Herves V,Wasilewska A

    更新日期:2004-06-01 00:00:00

  • Using Arden Syntax for the creation of a multi-patient surveillance dashboard.

    abstract:OBJECTIVE:Most practically deployed Arden-Syntax-based clinical decision support (CDS) modules process data from individual patients. The specification of Arden Syntax, however, would in principle also support multi-patient CDS. The patient data management system (PDMS) at our local intensive care units does not native...

    journal_title:Artificial intelligence in medicine

    pub_type: 杂志文章

    doi:10.1016/j.artmed.2015.09.009

    authors: Kraus S,Drescher C,Sedlmayr M,Castellanos I,Prokosch HU,Toddenroth D

    更新日期:2018-11-01 00:00:00

  • User-defined functions in the Arden Syntax: An extension proposal.

    abstract:BACKGROUND:The Arden Syntax is a knowledge-encoding standard, started in 1989, and now in its 10th revision, maintained by the health level seven (HL7) organization. It has constructs borrowed from several language concepts that were available at that time (mainly the HELP hospital information system and the Regenstrie...

    journal_title:Artificial intelligence in medicine

    pub_type: 杂志文章

    doi:10.1016/j.artmed.2015.11.003

    authors: Karadimas H,Ebrahiminia V,Lepage E

    更新日期:2018-11-01 00:00:00

  • Specification of models in large expert systems based on causal probabilistic networks.

    abstract::Problems involved in the specification of large expert systems are discussed. In the specification of causal probabilistic networks conditional probability tables for all nodes have to be provided. These conditional probability tables can often be described by models that specify the nature of interaction between node...

    journal_title:Artificial intelligence in medicine

    pub_type: 杂志文章

    doi:10.1016/0933-3657(93)90029-3

    authors: Olesen KG,Andreassen S

    更新日期:1993-06-01 00:00:00

  • Non-invasive estimate of blood glucose and blood pressure from a photoplethysmograph by means of machine learning techniques.

    abstract:OBJECTIVE:This work presents a system for a simultaneous non-invasive estimate of the blood glucose level (BGL) and the systolic (SBP) and diastolic (DBP) blood pressure, using a photoplethysmograph (PPG) and machine learning techniques. The method is independent of the person whose values are being measured and does n...

    journal_title:Artificial intelligence in medicine

    pub_type: 杂志文章

    doi:10.1016/j.artmed.2011.05.001

    authors: Monte-Moreno E

    更新日期:2011-10-01 00:00:00

  • Anatomical sketch understanding: recognizing explicit and implicit structure.

    abstract:OBJECTIVE:Sketching is ubiquitous in medicine. Physicians commonly use sketches as part of their note taking in patient records and to help convey diagnoses and treatments to patients. Medical students frequently use sketches to help them think through clinical problems in individual and group problem solving. Applicat...

    journal_title:Artificial intelligence in medicine

    pub_type: 杂志文章

    doi:10.1016/j.artmed.2006.07.010

    authors: Haddawy P,Dailey MN,Kaewruen P,Sarakhette N,Hai le H

    更新日期:2007-02-01 00:00:00

  • Utilizing temporal data abstraction for data validation and therapy planning for artificially ventilated newborn infants.

    abstract::Medical diagnosis and therapy planning at modern intensive care units (ICUs) have been refined by the technical improvement of their equipment. However, the bulk of continuous data arising from complex monitoring systems in combination with discontinuously assessed numerical and qualitative data creates a rising infor...

    journal_title:Artificial intelligence in medicine

    pub_type: 杂志文章

    doi:10.1016/s0933-3657(96)00355-7

    authors: Miksch S,Horn W,Popow C,Paky F

    更新日期:1996-11-01 00:00:00

  • Cancer survival classification using integrated data sets and intermediate information.

    abstract:OBJECTIVE:Although numerous studies related to cancer survival have been published, increasing the prediction accuracy of survival classes still remains a challenge. Integration of different data sets, such as microRNA (miRNA) and mRNA, might increase the accuracy of survival class prediction. Therefore, we suggested a...

    journal_title:Artificial intelligence in medicine

    pub_type: 杂志文章

    doi:10.1016/j.artmed.2014.06.003

    authors: Kim S,Park T,Kon M

    更新日期:2014-09-01 00:00:00

  • Continual planning and scheduling for managing patient tests in hospital laboratories.

    abstract::Hospital laboratories perform examination tests upon patients, in order to assist medical diagnosis or therapy progress. Planning and scheduling patient requests for examination tests is a complicated problem because it concerns both minimization of patient stay in hospital and maximization of laboratory resources uti...

    journal_title:Artificial intelligence in medicine

    pub_type: 杂志文章

    doi:10.1016/s0933-3657(00)00061-0

    authors: Marinagi CC,Spyropoulos CD,Papatheodorou C,Kokkotos S

    更新日期:2000-10-01 00:00:00

  • A spatio-temporal Bayesian network classifier for understanding visual field deterioration.

    abstract:OBJECTIVE:Progressive loss of the field of vision is characteristic of a number of eye diseases such as glaucoma which is a leading cause of irreversible blindness in the world. Recently, there has been an explosion in the amount of data being stored on patients who suffer from visual deterioration including field test...

    journal_title:Artificial intelligence in medicine

    pub_type: 杂志文章

    doi:10.1016/j.artmed.2004.07.004

    authors: Tucker A,Vinciotti V,Liu X,Garway-Heath D

    更新日期:2005-06-01 00:00:00

  • Design and validation of an intelligent patient monitoring and alarm system based on a fuzzy logic process model.

    abstract::The process of patient care performed by an anaesthesiologist during high invasive surgery requires fundamental knowledge of the physiologic processes and a long standing experience in patient management to cope with the inter-individual variability of the patients. Biomedical engineering research improves the patient...

    journal_title:Artificial intelligence in medicine

    pub_type: 杂志文章

    doi:10.1016/s0933-3657(97)00020-1

    authors: Becker K,Thull B,Käsmacher-Leidinger H,Stemmer J,Rau G,Kalff G,Zimmermann HJ

    更新日期:1997-09-01 00:00:00

  • Granular support vector machines with association rules mining for protein homology prediction.

    abstract:OBJECTIVE:Protein homology prediction between protein sequences is one of critical problems in computational biology. Such a complex classification problem is common in medical or biological information processing applications. How to build a model with superior generalization capability from training samples is an ess...

    journal_title:Artificial intelligence in medicine

    pub_type: 杂志文章

    doi:10.1016/j.artmed.2005.02.003

    authors: Tang Y,Jin B,Zhang YQ

    更新日期:2005-09-01 00:00:00

  • Constructing explanatory process models from biological data and knowledge.

    abstract:OBJECTIVE:We address the task of inducing explanatory models from observations and knowledge about candidate biological processes, using the illustrative problem of modeling photosynthesis regulation. METHODS:We cast both models and background knowledge in terms of processes that interact to account for behavior. We a...

    journal_title:Artificial intelligence in medicine

    pub_type: 杂志文章

    doi:10.1016/j.artmed.2006.04.003

    authors: Langley P,Shiran O,Shrager J,Todorovski L,Pohorille A

    更新日期:2006-07-01 00:00:00

  • A fuzzy cognitive map approach to differential diagnosis of specific language impairment.

    abstract::This paper presents a computer-based model for differential diagnosis of specific language impairment (SLI), a language disorder that, in many cases, cannot be easily diagnosed. This difficulty necessitates the development of a methodology to assist the speech therapist in the diagnostic process. The methodology tool ...

    journal_title:Artificial intelligence in medicine

    pub_type: 杂志文章

    doi:10.1016/s0933-3657(02)00076-3

    authors: Georgopoulos VC,Malandraki GA,Stylios CD

    更新日期:2003-11-01 00:00:00

  • Evolving artificial neural networks for screening features from mammograms.

    abstract::Disagreement or inconsistencies in mammographic interpretation motivates utilizing computerized pattern recognition algorithms to aid the assessment of radiographic features. We have studied the potential for using artificial neural networks (ANNs) to analyze interpreted radiographic features from film screen mammogra...

    journal_title:Artificial intelligence in medicine

    pub_type: 杂志文章

    doi:10.1016/s0933-3657(98)00040-2

    authors: Fogel DB,Wasson EC 3rd,Boughton EM,Porto VW

    更新日期:1998-11-01 00:00:00

  • Neural network based classification of single-trial EEG data.

    abstract::Standard Back Propagation (BP), Partially Recurrent (PR) and Cascade-Correlation (CC) neural networks were used to predict the side of finger movement on the basis of non-averaged single trial multi-channel EEG data recorded prior to movement. From these EEG data, power values were calculated and used as parameters fo...

    journal_title:Artificial intelligence in medicine

    pub_type: 杂志文章

    doi:10.1016/0933-3657(93)90040-a

    authors: Masic N,Pfurtscheller G

    更新日期:1993-12-01 00:00:00

  • Bounded-depth threshold circuits for computer-assisted CT image classification.

    abstract::We present a stochastic algorithm that computes threshold circuits designed to discriminate between two classes of computed tomography (CT) images. The algorithm employs a partition of training examples into several classes according to the average grey scale value of images. For each class, a sub-circuit is computed,...

    journal_title:Artificial intelligence in medicine

    pub_type: 杂志文章

    doi:10.1016/s0933-3657(01)00101-4

    authors: Albrecht A,Hein E,Steinhöfel K,Taupitz M,Wong CK

    更新日期:2002-02-01 00:00:00

  • Evaluation of two different models of semi-automatic knowledge acquisition for the medical consultant system CADIAG-II/RHEUMA.

    abstract::As part of a plan to promote semi-automatic knowledge acquisition for the medical consultant system CADIAG-II/RHEUMA, this study sought to explore and cope with the variability of results that may be anticipated when performing knowledge acquisition with patient data from different patient settings. Patient data were ...

    journal_title:Artificial intelligence in medicine

    pub_type: 杂志文章

    doi:10.1016/s0933-3657(02)00025-8

    authors: Leitich H,Adlassnig KP,Kolarz G

    更新日期:2002-07-01 00:00:00

  • Information extraction from multi-institutional radiology reports.

    abstract:OBJECTIVES:The radiology report is the most important source of clinical imaging information. It documents critical information about the patient's health and the radiologist's interpretation of medical findings. It also communicates information to the referring physicians and records that information for future clinic...

    journal_title:Artificial intelligence in medicine

    pub_type: 杂志文章,多中心研究

    doi:10.1016/j.artmed.2015.09.007

    authors: Hassanpour S,Langlotz CP

    更新日期:2016-01-01 00:00:00

  • HepatoConsult: a knowledge-based second opinion and documentation system.

    abstract::HepatoConsult is a publicly available knowledge-based second opinion and documentation system aiding in the diagnosis of liver diseases. The positive results of a prospective diagnostic evaluation study encouraged its use in clinical routine, although the available hardware infrastructure was not optimal. The comments...

    journal_title:Artificial intelligence in medicine

    pub_type: 杂志文章

    doi:10.1016/s0933-3657(01)00104-x

    authors: Buscher HP,Engler Ch,Führer A,Kirschke S,Puppe F

    更新日期:2002-03-01 00:00:00

  • A novel deep mining model for effective knowledge discovery from omics data.

    abstract::Knowledge discovery from omics data has become a common goal of current approaches to personalised cancer medicine and understanding cancer genotype and phenotype. However, high-throughput biomedical datasets are characterised by high dimensionality and relatively small sample sizes with small signal-to-noise ratios. ...

    journal_title:Artificial intelligence in medicine

    pub_type: 杂志文章

    doi:10.1016/j.artmed.2020.101821

    authors: Alzubaidi A,Tepper J,Lotfi A

    更新日期:2020-04-01 00:00:00