Single-Molecule Sequencing (PacBio) of the Staphylococcus capitis NRCS-A Clone Reveals the Basis of Multidrug Resistance and Adaptation to the Neonatal Intensive Care Unit Environment.

abstract：:Clustered Regularly Interspaced Short Palindromic Repeats (CRISPR) is an adaptive immune system that resists foreign genes through nuclease targeting in bacteria and archaea. In this study, we analyzed 68 strains of Lactobacillus casei group from the NCBI GenBank database, and bioinformatic tools were used to investig...

journal_title：Frontiers in microbiology

authors： Yang L,Li W,Ujiroghene OJ,Yang Y,Lu J,Zhang S,Pang X,Lv J

更新日期：2020-04-08 00:00:00

abstract：:The prevalent Staphylococcus aureus clones and antibiotic susceptibility profiles are known to change dynamically and geographically; however, recent S. aureus strains causing infections in women and children in China have not been characterized. In this study, we analyzed the molecular epidemiology and antimicrobial ...

journal_title：Frontiers in microbiology

authors： Liang B,Mai J,Liu Y,Huang Y,Zhong H,Xie Y,Deng Q,Huang L,Yao S,He Y,Long Y,Yang Y,Gong S,Yang H,Zhou Z

更新日期：2018-11-16 00:00:00

abstract：:The human APOBEC3 (A3) family (A, B, C, DE, F, G, and H) comprises host defense factors that potently inhibit the replication of diverse retroviruses, retrotransposons, and the other viral pathogens. HIV-1 has a counterstrategy that includes expressing the Vif protein to abrogate A3 antiviral function. Without Vif, A3...

journal_title：Frontiers in microbiology

authors： Imahashi M,Nakashima M,Iwatani Y

更新日期：2012-07-09 00:00:00

abstract：:Campylobacteriosis is the most frequently reported bacterial food-borne illness in the European Union and contaminated broiler meat is considered the most important source of infection in humans. The aim of the present study was to evaluate real-time PCR (qPCR) and digital PCR (dPCR) for quantification of Campylobacte...

journal_title：Frontiers in microbiology

authors： Papić B,Pate M,Henigman U,Zajc U,Gruntar I,Biasizzo M,Ocepek M,Kušar D

更新日期：2017-03-02 00:00:00

abstract：:Cheese microbiota contribute significantly to the final characteristics of cheeses due to the growth and interaction between cheese microorganisms during processing and ripening. For raw milk cheeses, such as Parmigiano Reggiano (PR), the microbiota derive from the raw milk itself, the dairy environment, and the start...

journal_title：Frontiers in microbiology

authors： Bottari B,Levante A,Bancalari E,Sforza S,Bottesini C,Prandi B,De Filippis F,Ercolini D,Nocetti M,Gatti M

更新日期：2020-10-02 00:00:00

abstract：:Background: Whole-genome sequencing (WGS) is a viable and financially feasible tool for timely and comprehensive diagnosis of drug resistance in developed countries. With the increase in the incidence of multidrug-resistant tuberculosis (MDR-TB), second-line anti-TB drugs are gaining importance. However, genetic resis...

journal_title：Frontiers in microbiology

authors： Chen X,He G,Wang S,Lin S,Chen J,Zhang W

更新日期：2019-07-31 00:00:00

abstract：:Grapevine leafroll disease (GLD) is caused by a complex of vector-borne virus species in the family Closteroviridae. GLD is present in all grape-growing regions of the world, primarily affecting wine grape varieties. The disease has emerged in the last two decades as one of the major factors affecting grape fruit qual...

journal_title：Frontiers in microbiology

authors： Almeida RP,Daane KM,Bell VA,Blaisdell GK,Cooper ML,Herrbach E,Pietersen G

更新日期：2013-04-24 00:00:00

abstract：:In the fast-growing Escherichia coli cells, RNA polymerase (RNAP) molecules are concentrated and form foci at clusters of ribosomal RNA (rRNA) operons resembling eukaryotic nucleolus. The bacterial nucleolus-like organization, spatially compartmentalized at the surface of the compact bacterial chromosome (nucleoid), s...

journal_title：Frontiers in microbiology

authors： Mata Martin C,Sun Z,Zhou YN,Jin DJ

更新日期：2018-06-05 00:00:00

abstract：:Vibrio vulnificus (Vv) is a multi-host pathogenic species currently subdivided into three biotypes (Bts). The three Bts are human-pathogens, but only Bt2 is also a fish-pathogen, an ability that is conferred by a transferable virulence-plasmid (pVvbt2). Here we present a phylogenomic analysis from the core genome of 8...

journal_title：Frontiers in microbiology

authors： Roig FJ,González-Candelas F,Sanjuán E,Fouz B,Feil EJ,Llorens C,Baker-Austin C,Oliver JD,Danin-Poleg Y,Gibas CJ,Kashi Y,Gulig PA,Morrison SS,Amaro C

更新日期：2018-01-05 00:00:00

abstract：:Syngas generated by thermal gasification of biomass or coal can be steam reformed and purified into methane, which could be used locally for energy needs, or re-injected in the natural gas grid. As an alternative to chemical catalysis, the main components of the syngas (CO, CO2, and H2) can be used as substrates by a ...

journal_title：Frontiers in microbiology

authors： Sancho Navarro S,Cimpoia R,Bruant G,Guiot SR

更新日期：2016-08-03 00:00:00

abstract：:Biological nitrogen fixation plays a crucial role in the nitrogen cycle. An ability to fix atmospheric nitrogen, reducing it to ammonium, was described for multiple species of Bacteria and Archaea. The transcriptional regulatory network for nitrogen fixation was extensively studied in several representatives of the cl...

journal_title：Frontiers in microbiology

authors： Tsoy OV,Ravcheev DA,Čuklina J,Gelfand MS

更新日期：2016-08-26 00:00:00

abstract：:Biological stability of drinking water refers to the concept of providing consumers with drinking water of same microbial quality at the tap as produced at the water treatment facility. However, uncontrolled growth of bacteria can occur during distribution in water mains and premise plumbing, and can lead to hygienic ...

journal_title：Frontiers in microbiology

authors： Prest EI,Hammes F,van Loosdrecht MC,Vrouwenvelder JS

更新日期：2016-02-01 00:00:00

abstract：:The human gut is inhabited by diverse microorganisms that play crucial roles in health and disease. Gut microbiota dysbiosis is increasingly considered as a vital factor in the etiopathogenesis of irritable bowel syndrome (IBS), which is a common functional gastrointestinal disorder with a high incidence all over the ...

journal_title：Frontiers in microbiology

authors： Gu Y,Zhou G,Qin X,Huang S,Wang B,Cao H

更新日期：2019-08-21 00:00:00

abstract：:Background and Aim: The circulating recombinant form 02_AG (CRF02_AG) is the predominant clade among the human immunodeficiency virus type-1 (HIV-1) non-Bs with a prevalence of 5.97% (95% Confidence Interval-CI: 5.41-6.57%) across Spain. Our aim was to estimate the levels of regional clustering for CRF02_AG and the sp...

journal_title：Frontiers in microbiology

authors： Kostaki EG,Flampouris A,Karamitros T,Chueca N,Alvarez M,Casas P,Alejos B,Hatzakis A,Garcia F,Paraskevis D,CoRIS.

更新日期：2019-03-11 00:00:00

abstract：:Species of Trichoderma exert direct biocontrol activity against soil-borne plant pathogens due to their ability to compete for nutrients and to inhibit or kill their targets through the production of antibiotics and/or hydrolytic enzymes. In addition to these abilities, Trichoderma spp. have beneficial effects for pla...

journal_title：Frontiers in microbiology

authors： Pérez E,Rubio MB,Cardoza RE,Gutiérrez S,Bettiol W,Monte E,Hermosa R

更新日期：2015-10-27 00:00:00

abstract：:A method for the extraction of nucleic acids from a wide range of environmental samples was developed. This method consists of several modules, which can be individually modified to maximize yields in extractions of DNA and RNA or separations of DNA pools. Modules were designed based on elaborate tests, in which permu...

journal_title：Frontiers in microbiology

authors： Lever MA,Torti A,Eickenbusch P,Michaud AB,Šantl-Temkiv T,Jørgensen BB

更新日期：2015-05-19 00:00:00

abstract：:Yersinia pestis, responsible for causing fulminant plague, has evolved clonally from the enteric pathogen, Y. pseudotuberculosis, which in contrast, causes a relatively benign enteric illness. An ~97% nucleotide identity over 75% of their shared protein coding genes is maintained between these two pathogens, leaving m...

journal_title：Frontiers in microbiology

authors： Martínez-Chavarría LC,Vadyvaloo V

更新日期：2015-09-17 00:00:00

abstract：:Protein export in bacteria is facilitated by the canonical SecB chaperone, which binds to unfolded precursor proteins, maintains them in a translocation competent state and specifically cooperates with the translocase motor SecA to ensure their proper targeting to the Sec translocon at the cytoplasmic membrane. Beside...

journal_title：Frontiers in microbiology

authors： Sala A,Bordes P,Genevaux P

更新日期：2014-12-05 00:00:00

abstract：:Lower and upper respiratory infections are the fourth highest cause of global mortality (Lozano et al., 2012). Epidemic and pandemic outbreaks of respiratory infection are a major medical concern, often causing considerable disease and a high death toll, typically over a relatively short period of time. Influenza is a...

journal_title：Frontiers in microbiology

authors： Morris DE,Cleary DW,Clarke SC

更新日期：2017-06-23 00:00:00

abstract：:The competition between sulfate reducing bacteria and methanogens over common substrates has been proposed as a critical control for methane production. In this study, we examined the co-existence of methanogenesis and sulfate reduction with shared substrates over a large range of sulfate concentrations and rates of s...

journal_title：Frontiers in microbiology

authors： Sela-Adler M,Ronen Z,Herut B,Antler G,Vigderovich H,Eckert W,Sivan O

更新日期：2017-05-05 00:00:00

abstract：:Clostridium difficile PCR ribotype (RT) 014 is well-established in both human and porcine populations in Australia, raising the possibility that C. difficile infection (CDI) may have a zoonotic or foodborne etiology. Here, whole genome sequencing and high-resolution core genome phylogenetics were performed on a contem...

journal_title：Frontiers in microbiology

authors： Knight DR,Squire MM,Collins DA,Riley TV

更新日期：2017-01-11 00:00:00

abstract：:Fusarium head blight (FHB) is a disease of cereal crops caused by trichothecene producing Fusarium species. Trichothecenes, macrocylicic fungal metabolites composed of three fused rings (A-C) with one epoxide functionality, are a class of mycotoxins known to inhibit protein synthesis in eukaryotic ribosomes. These tox...

journal_title：Frontiers in microbiology

authors： Foroud NA,Shank RA,Kiss D,Eudes F,Hazendonk P

更新日期：2016-08-17 00:00:00

abstract：:Burkholderia pseudomallei is the Gram-negative bacterial pathogen responsible for the disease melioidosis. B. pseudomallei establishes disease in susceptible individuals through multiple routes of infection, all of which may proceed to a septicemic disease associated with a high mortality rate. B. pseudomallei opportu...

journal_title：Frontiers in microbiology

authors： Warawa JM

更新日期：2010-12-29 00:00:00

abstract：:The intestinal microbial composition and metabolic functions under normal physiological conditions in the donkey are crucial for health and production performance. However, compared with other animal species, limited information is currently available regarding the intestinal microbiota of donkeys. In the present stud...

journal_title：Frontiers in microbiology

authors： Zhang R,Zhang J,Dang W,Irwin DM,Wang Z,Zhang S

更新日期：2020-12-04 00:00:00

abstract：:Our perspective on nature has changed throughout history and at the same time has affected directly or indirectly our perception of biological processes. In that sense, the "fluxus" of information in a viral population arises a result of a much more complex process than the encoding of a protein by a gene, but as the ...

journal_title：Frontiers in microbiology

authors： Scolaro LA,Roldan JS,Theaux C,Damonte EB,Carlucci MJ

更新日期：2017-12-22 00:00:00

abstract：:Acidithiobacillus caldus (A. caldus) is a common bioleaching bacterium that possesses a sophisticated and highly efficient inorganic sulfur compound metabolism network. Thiosulfate, a central intermediate in the sulfur metabolism network of A. caldus and other sulfur-oxidizing microorganisms, can be metabolized via th...

journal_title：Frontiers in microbiology

authors： Wang ZB,Li YQ,Lin JQ,Pang X,Liu XM,Liu BQ,Wang R,Zhang CJ,Wu Y,Lin JQ,Chen LX

更新日期：2016-11-03 00:00:00

abstract：:Bacterial species differ greatly in the number and location of the rRNA operons which may be present in the bacterial chromosomes and plasmids. Most bacterial species contain more than one ribosomal RNA operon copy in their genomes, with some species containing up to 15 such copies. We review the number and location o...

journal_title：Frontiers in microbiology

authors： Espejo RT,Plaza N

更新日期：2018-06-08 00:00:00

abstract：:Understanding the seasonal emergence and reemergence of cholera is challenging due to the complex dynamics of different protagonists. The abundance of Vibrio cholerae, the causative agent of cholera and a natural inhabitant of aquatic environments, fluctuates according to abiotic, and biotic factors. Among the biotic ...

journal_title：Frontiers in microbiology

authors： Constantin de Magny G,Hasan NA,Roche B

更新日期：2014-04-02 00:00:00

abstract：:The crosstalk between the gut microbiota and immune state of the host is an essential focus in academia and clinics. To explore the dynamic role of the microbiota in response to immune deficiency, we comprehensively assessed the microbiome of 90 mouse fecal samples, across three time points including two immunodeficie...

journal_title：Frontiers in microbiology

authors： Zheng S,Zhao T,Yuan S,Yang L,Ding J,Cui L,Xu M

更新日期：2019-11-01 00:00:00

abstract：:Dimethylsulfoniopropionate (DMSP) is a metabolite produced primarily by marine phytoplankton and is the main precursor to the climatically important gas dimethylsulfide (DMS). DMS is released upon bacterial catabolism of DMSP, but it is not the only possible fate of DMSP sulfur. An alternative demethylation/demethiola...

journal_title：Frontiers in microbiology

authors： Reisch CR,Moran MA,Whitman WB

更新日期：2011-08-12 00:00:00