One-third of the plastid genes evolved under positive selection in PACMAD grasses.

Abstract:

MAIN CONCLUSION:We demonstrate that rbcL underwent strong positive selection during the C 3 -C 4 photosynthetic transitions in PACMAD grasses, in particular the 3' end of the gene. In contrast, selective pressures on other plastid genes vary widely and environmental drivers remain to be identified. Plastid genomes have been widely used to infer phylogenetic relationships among plants, but the selective pressures driving their evolution have not been systematically investigated. In our study, we analyse all protein-coding plastid genes from 113 species of PACMAD grasses (Poaceae) to evaluate the selective pressures driving their evolution. Our analyses confirm that the gene encoding the large subunit of RubisCO (rbcL) evolved under strong positive selection after C3-C4 photosynthetic transitions. We highlight new codons in rbcL that underwent parallel changes, in particular those encoding the C-terminal part of the protein. C3-C4 photosynthetic shifts did not significantly affect the evolutionary dynamics of other plastid genes. Instead, while two-third of the plastid genes evolved under purifying selection or neutrality, 25 evolved under positive selection across the PACMAD clade. This set of genes encode for proteins involved in diverse functions, including self-replication of plastids and photosynthesis. Our results suggest that plastid genes widely adapt to changing ecological conditions, but factors driving this evolution largely remain to be identified.

journal_name

Planta

journal_title

Planta

authors

Piot A,Hackel J,Christin PA,Besnard G

doi

10.1007/s00425-017-2781-x

subject

Has Abstract

pub_date

2018-01-01 00:00:00

pages

255-266

issue

1

eissn

0032-0935

issn

1432-2048

pii

10.1007/s00425-017-2781-x

journal_volume

247

pub_type

杂志文章

相关文献

PLANTA文献大全
  • [An attempt at a causal analysis of the geotropical reaction chain in the Chara rhizoid].

    abstract::In the initial phase of the geotropical reaction of the Chara rhizoid the growth difference postulated by Sievers (1967c) between the physically upper, slightly subapical flank and the lower one is demonstrated. In horizontal exposure the growth of the extreme cell apex is continued, while the growth of the lower flan...

    journal_title:Planta

    pub_type: 杂志文章

    doi:10.1007/BF00386948

    authors: Sievers A,Schröter K

    更新日期:1971-12-01 00:00:00

  • All-trans-farnesol: a naturally occurring antitranspirant?

    abstract::Lipid extracts from Sorghum sudanese Stapf (cv Piper) that had been subjected to different degrees of water stress contained increasing amounts of a sesquiterpenoid, other than abscisic acid, as the amount of stress increased and subsequent bioassay showed that this substance was capable of inducing stomatal closure. ...

    journal_title:Planta

    pub_type: 杂志文章

    doi:10.1007/BF00390293

    authors: Wellburn AR,Ogunkanmi AB,Fenton R,Mansfield TA

    更新日期:1974-01-01 00:00:00

  • Actin-related defense mechanism to reject penetration attempt by a non-pathogen is maintained in tobacco BY-2 cells.

    abstract::The actin cytoskeleton is a key player in defense responses during early stages of infection by fungal pathogens. To investigate molecular mechanisms of actin-related defense responses, a cultured tobacco ( Nicotiana tabacum L.) BY-2 cell system was devised. When conidia were directly deposited on BY-2 cells, neither ...

    journal_title:Planta

    pub_type: 杂志文章

    doi:10.1007/s00425-003-1042-3

    authors: Kobayashi I,Hakuno H

    更新日期:2003-06-01 00:00:00

  • Floral visitation and reproductive traits of Stamenoid petals, a naturally occurring floral homeotic variant of Capsella bursa-pastoris (Brassicaceae).

    abstract::Homeotic changes played a considerable role during the evolution of flowers, but how floral homeotic mutants initially survive in nature has remained enigmatic. To better understand the evolutionary potential of floral homeotic mutants, we established as a model system Stamenoid petals (Spe), a natural variant of Caps...

    journal_title:Planta

    pub_type: 杂志文章

    doi:10.1007/s00425-009-1018-z

    authors: Ziermann J,Ritz MS,Hameister S,Abel C,Hoffmann MH,Neuffer B,Theissen G

    更新日期:2009-11-01 00:00:00

  • The control of food mobilisation in seeds of Cucumis sativus L. : I. The influence of embryonic axis and testa on protein and lipid degradation.

    abstract::The development of maximal rates of lipid and protein hydrolysis in cucumber cotyledons depends upon the removal of the testa and the presence of the embryonic axis. The testa appears to exert at least part of its inhibitory influence by suppressing the development of enzyme activity associated with lipolysis and prot...

    journal_title:Planta

    pub_type: 杂志文章

    doi:10.1007/BF00388835

    authors: Davies HV,Chapman JM

    更新日期:1979-10-01 00:00:00

  • The light-induced reduction of the gravitropic growth-orientation of seedlings of Arabidopsis thaliana (L.) Heynh. is a photomorphogenic response mediated synergistically by the far-red-absorbing forms of phytochromes A and B.

    abstract::Hypocotyls of dark-grown seedlings of Arabidosis thaliana exhibit a strong negative gravitropism, which is reduced by red and also by long-wavelength, far-red light treatments. Light treatments using phytochrome A (phyA)- and phytochrome B (phyB)-deficient mutants showed that this response is controlled by phyB in a r...

    journal_title:Planta

    pub_type: 杂志文章

    doi:10.1007/BF00195180

    authors: Poppe C,Hangarter RP,Sharrock RA,Nagy F,Schäfer E

    更新日期:1996-01-01 00:00:00

  • Transcripts of MYB-like genes respond to phosphorous and nitrogen deprivation in Arabidopsis.

    abstract::In Arabidopsis thaliana (L.) Heynh., AtPhr2 and AtNsr1 encode proteins with MYB-like and alpha-helical domains. They resemble CrPsr1, a nuclear-localized MYB protein that is critical for acclimation to phosphorous (P) starvation in the alga Chlamydomonas reinhardtii. Reverse transcription-polymerase chain reaction ana...

    journal_title:Planta

    pub_type: 杂志文章

    doi:10.1007/s00425-004-1305-7

    authors: Todd CD,Zeng P,Huete AM,Hoyos ME,Polacco JC

    更新日期:2004-10-01 00:00:00

  • Identification and deletion analysis of the promoter of the pepper SAR8.2 gene activated by bacterial infection and abiotic stresses.

    abstract::The pepper SAR8.2 gene, CASAR82A, was locally and systemically induced in pepper plants which had been infected by Xanthomonas campestris pv. vesicatoria or by Pseudomonas fluorescens. The DNA 1,283 bp sequence upstream of the CASAR82A gene was assessed with regard to the activity of the CASAR82A promoter fused to the...

    journal_title:Planta

    pub_type: 杂志文章

    doi:10.1007/s00425-005-0210-z

    authors: Lee SC,Hwang BK

    更新日期:2006-07-01 00:00:00

  • Reorganization of wheat and rye genomes in octoploid triticale (× Triticosecale).

    abstract:MAIN CONCLUSION:The analysis of early generations of triticale showed numerous rearrangements of the genome. Complexed transformation included loss of chromosomes, t-heterochromatin content changes and the emergence of retrotransposons in new locations. This study investigated certain aspects of genomic transformations...

    journal_title:Planta

    pub_type: 杂志文章

    doi:10.1007/s00425-017-2827-0

    authors: Kalinka A,Achrem M

    更新日期:2018-04-01 00:00:00

  • Expression of heterologous xyloglucan xylosyltransferases in Arabidopsis to investigate their role in determining xyloglucan xylosylation substitution patterns.

    abstract:MAIN CONCLUSION:Putative XyG xylosyltransferases from Tropaeolum majus (nasturtium) and Solanum lycopersicum (tomato) homologous to characterized Arabidopsis genes were identified and shown to functionally complement Arabidopsis mutants lacking xyloglucan demonstrating they represent xyloglucan xylosyltransferases. Xyl...

    journal_title:Planta

    pub_type: 杂志文章

    doi:10.1007/s00425-015-2243-2

    authors: Mansoori N,Schultink A,Schubert J,Pauly M

    更新日期:2015-05-01 00:00:00

  • Molecular cloning of a cDNA encoding a (1-->4)-beta-mannan endohydrolase from the seeds of germinated tomato (Lycopersicon esculentum).

    abstract::Mannose-containing polysaccharides are widely distributed in cell walls of higher plants. During endosperm mobilization in germinated tomato seeds (1-->4)-beta-mannan endohydrolases (EC 3.2.1.78) participate in the enzymic depolymerization of these cell wall polysaccharides. A cDNA encoding a (1-->4)-beta-mannanase fr...

    journal_title:Planta

    pub_type: 杂志文章

    doi:10.1007/s004250050214

    authors: Bewley JD,Burton RA,Morohashi Y,Fincher GB

    更新日期:1997-12-01 00:00:00

  • A survey for isoenzymes of glucosephosphate isomerase, phosphoglucomutase, glucose-6-phosphate dehydrogenase and 6-Phosphogluconate dehydrogenase in C3-, C 4-and crassulacean-acid-metabolism plants, and green algae.

    abstract::Two isoenzymes each of glucosephosphate isomerase (EC 5.3.1.9), phosphoglucomutase (EC 2.7.5.1), glucose-6-phosphate dehydrogenase (EC 1.1.1.49) and 6-phosphogluconate dehydrogenase (EC 1.1.1.43) were separated by (NH4)2SO4 gradient solubilization and DEAE-cellulose ion-exchange chromatography from green leaves of the...

    journal_title:Planta

    pub_type: 杂志文章

    doi:10.1007/BF00379933

    authors: Herbert M,Burkhard C,Schnarrenberger C

    更新日期:1979-01-01 00:00:00

  • Inorganic pyrophosphate content and metabolites in potato and tobacco plants expressing E. coli pyrophosphatase in their cytosol.

    abstract::Metabolite levels and carbohydrates were investigated in the leaves of tobacco (Nicotiana tabacum L.) and leaves and tubers of potato (Solanum tuberosum L.) plants which had been transformed with pyrophosphatase from Escherichia coli. In tobacco the leaves contained two- to threefold less pyrophosphate than controls a...

    journal_title:Planta

    pub_type: 杂志文章

    doi:10.1007/BF00216819

    authors: Jelitto T,Sonnewald U,Willmitzer L,Hajirezeai M,Stitt M

    更新日期:1992-09-01 00:00:00

  • Inhibition of gamete formation by cycloheximide in pollen tubes of Impatients balsamina.

    abstract::Cycloheximide (CH) inhibited the division of generative cell in pollen cultures of Impatiens balsamina in concentrations of 1-200 μg/ml without affecting pollen germination or pollen tube growth. This inhibition was reversible up to 3 h in hanging drop cultures and up to 6 h in test tube cultures by replacement of the...

    journal_title:Planta

    pub_type: 杂志文章

    doi:10.1007/BF00390799

    authors: Shivanna KR,Jaiswal VS,Mohan Ram HY

    更新日期:1974-06-01 00:00:00

  • Atmospheric pCO2 impacts leaf structural and physiological traits in Quercus petraea seedlings.

    abstract:MAIN CONCLUSION:Atmospheric p CO 2 impacts Quercus petraea biomass production and cell wall composition of the leaves in favor of cellulose at the expense of lignin, and enhances foliar non-structural carbohydrate levels and sucrose contents in a pCO 2 concentration-dependent manner. Sessile oak (Quercus petraea Liebl....

    journal_title:Planta

    pub_type: 杂志文章

    doi:10.1007/s00425-018-3016-5

    authors: Arab L,Seegmueller S,Kreuzwieser J,Eiblmeier M,Rennenberg H

    更新日期:2019-02-01 00:00:00

  • From plant physiology to pharmacology: fusicoccin leaves the leaves.

    abstract:MAIN CONCLUSION:This review highlights 50 years of research on the fungal diterpene fusicoccin, during which the molecule went from a tool in plant physiology research to a pharmacological agent in treating animal diseases. Fusicoccin is a phytotoxic glycosylated diterpene produced by the fungus Phomopsis amygdali, a p...

    journal_title:Planta

    pub_type: 杂志文章,评审

    doi:10.1007/s00425-018-3051-2

    authors: Camoni L,Visconti S,Aducci P,Marra M

    更新日期:2019-01-01 00:00:00

  • Appearance of nitrite-reductase mRNA in mustard seedling cotyledons is regulated by phytochrome.

    abstract::Nitrate reductase (NR, EC 1.6.6.1) and nitrite reductase (NIR, EC 1.7.7.1) are the key enzymes of nitrate reduction. It is well established that the appearance of these enzymes is "induced" by nitrate, and it is generally believed that NR is cytosolic while NIR is plastidic. In mustard (Sinapis alba L.) cotyledons we ...

    journal_title:Planta

    pub_type: 杂志文章

    doi:10.1007/BF00195884

    authors: Schuster C,Mohr H

    更新日期:1990-06-01 00:00:00

  • The ratio of variable to maximum chlorophyll fluorescence from photosystem II, measured in leaves at ambient temperature and at 77K, as an indicator of the photon yield of photosynthesis.

    abstract::The response of a number of species to high light levels was examined to determine whether chlorophyll fluorescence from photosystem (PS) II measured at ambient temperature could be used quantitatively to estimate the photon yield of O2 evolution. In many species, the ratio of the yield of the variable (FV) and the ma...

    journal_title:Planta

    pub_type: 杂志文章

    doi:10.1007/BF00193991

    authors: Adams WW 3rd,Demmig-Adams B,Winter K,Schreiber U

    更新日期:1990-01-01 00:00:00

  • Role of cytokinin in the regulation of root gravitropism.

    abstract::The models explaining root gravitropism propose that the growth response of plants to gravity is regulated by asymmetric distribution of auxin (indole-3-acetic acid, IAA). Since cytokinin has a negative regulatory role in root growth, we suspected that it might function as an inhibitor of tropic root elongation during...

    journal_title:Planta

    pub_type: 杂志文章

    doi:10.1007/s00425-004-1381-8

    authors: Aloni R,Langhans M,Aloni E,Ullrich CI

    更新日期:2004-11-01 00:00:00

  • [Metabolism of γ-aminobutyrate in Agaricus bisporus Lge. : II: γ-aminobutyrate: γ-ketoglutarate aminotransferase].

    abstract::Transamination between γ-aminobutyrate and α-ketoglutarate provides a pathway for the utilization of γ-aminobutyrate in fruit-bodies of Agaricus bisporus Lge. This reaction leads to the formation of succinic semialdehyde, a metabolic intermediate in the metabolism of γ-aminobutyrate to succinate in the cell. γ-aminobu...

    journal_title:Planta

    pub_type: 杂志文章

    doi:10.1007/BF00387833

    authors: Baldy P

    更新日期:1976-01-01 00:00:00

  • Movement of Lucifer Yellow CH in potato tuber storage tissues: A comparison of symplastic and apoplastic transport.

    abstract::The fluorescent dye Lucifer Yellow CH (LYCH) was introduced directly into the symplast of potato (Solanum tuberosum L.) tuber storage parenchyma by microinjection and also into the apoplast through cuts made in the stolon cortex. Microinjected LYCH moved away rapidly from a single storage cell and spread radially via ...

    journal_title:Planta

    pub_type: 杂志文章

    doi:10.1007/BF00397661

    authors: Oparka KJ,Prior DA

    更新日期:1988-12-01 00:00:00

  • Fast track to the trichome: induction of N-acyl nornicotines precedes nicotine induction in Nicotiana repanda.

    abstract::Nicotiana repanda Wildenow ex Lehmann acylates nornicotine in its trichomes to produce N-acyl-nornicotine (NacNN) alkaloids which are dramatically more toxic than nicotine is to the nicotine-adapted herbivore, Manduca sexta. These NacNNs, like nicotine, were induced by methyl jasmonate (MeJA) and wounding, but the 2-f...

    journal_title:Planta

    pub_type: 杂志文章

    doi:10.1007/s004250050038

    authors: Laue G,Preston CA,Baldwin IT

    更新日期:2000-02-01 00:00:00

  • Qualitative and quantitative aspects of betalains biosynthesis in Amaranthus caudatus L. var. pendula seedlings.

    abstract::Seedlings of Amaranthus caudatus L. var. Pendula were used to study the influence of several treatment: white light, 3,4-dihydroxyphenylalanine (DOPA), kinetin, gibberellic acid (GA3) on betalains biosynthesis. The pigments, betacyanins and betaxanthins, were separated using a Sephadex G-15 column chromatography. Qual...

    journal_title:Planta

    pub_type: 杂志文章

    doi:10.1007/BF00380880

    authors: Bianco-Colomas J

    更新日期:1980-07-01 00:00:00

  • Respiration induced by blue light.

    abstract::The high rate of respiration in Chlorella which is found after feeding with glucose or after a longer period of photosynthesis, declines in the dark in the course of hours to about a quarter of its original value. Blue-green light (λ<550 mμ) specifically counteracts this decline and maintains the high rate. This blue ...

    journal_title:Planta

    pub_type: 杂志文章

    doi:10.1007/BF00380214

    authors: Kowallik W,Gaffron H

    更新日期:1966-03-01 00:00:00

  • The effect of kinetin on stomata of the grass Anthephora pubescens Nees.

    abstract::Transpiration from excised leaves of Anthephra pubescens Nees was enhanced by 1 and 10 mmol m(-3) kinetin. Stomatal opening in isolated epidermal strips of A. pubescens under CO2-free air and in the absence of K(+) was enhanced by 10 mmol m(-3) kinetin. ...

    journal_title:Planta

    pub_type: 杂志文章

    doi:10.1007/BF00388157

    authors: Incoll LD,Whitelam GC

    更新日期:1977-01-01 00:00:00

  • Relationship between leaf development, carboxylase enzyme activities and photorespiration in the C4-plant Portulaca oleracea L.

    abstract::Ribulose diphosphate (RuDP) and (PEP) phosphoenolpyruvate carboxylase enzyme activities were studied in young, mature, and senescent Portulaca oleracea leaves. While the absolute amount of both the C3 (RuDP) and C4 (PEP) carboxylase is less in senescent leaves than in mature leaves, RuDP carboxylase activity is reduce...

    journal_title:Planta

    pub_type: 杂志文章

    doi:10.1007/BF00390316

    authors: Kennedy RA

    更新日期:1976-01-01 00:00:00

  • Effects of pH and deuterium oxide on the heat-inactivation temperature of chloroplasts.

    abstract::The inactivation temperature for Hill activity and for the long-lived delayed fluorescence of isolated Pisum sativum L. chloroplasts was found to depend on pH, the maximal value being in the pH region 5-7. Salts increase the inactivation temperature by 4-7°C. Effects of D2O and some other substances that modify the th...

    journal_title:Planta

    pub_type: 杂志文章

    doi:10.1007/BF00402854

    authors: Venediktov PS,Krivoshejeva AA

    更新日期:1984-03-01 00:00:00

  • Cytosolic cycles regulate the turnover of sucrose in heterotrophic cell-suspension cultures of Chenopodium rubrum L.

    abstract::We have investigated whether sucrose accumulation in heterotrophic cell-suspension cultures of Chenopodium rubrum L. is regulated by a cycle in which sucrose is simultaneously synthesised and degraded. Net sucrose accumulation was measured by monitoring the sucrose content, unidirectional synthesis was monitored by su...

    journal_title:Planta

    pub_type: 杂志文章

    doi:10.1007/BF00197115

    authors: Dancer J,Hatzfeld WD,Stitt M

    更新日期:1990-09-01 00:00:00

  • Maize glutathione-dependent formaldehyde dehydrogenase: protein sequence and catalytic properties.

    abstract::Glutathione-dependent formaldehyde dehydrogenase (FDH; EC 1.2.1.1) has been purified 3900-fold from maize cell-suspension cultures to a specific activity of 4.68 mumol (mg protein)-1 min-1. The homogeneous enzyme consisted of two identical subunits with a molecular mass of 42 kDa, and an isoelectric point of 5.8. Eigh...

    journal_title:Planta

    pub_type: 杂志文章

    doi:10.1007/s004250050529

    authors: Wippermann U,Fliegmann J,Bauw G,Langebartels C,Maier K,Sandermann H Jr

    更新日期:1999-03-01 00:00:00

  • The influence of light, gibberellic acid and CCC on sprout growth and mobilization of tuber reserves in the potato (Solanum tuberosum L.).

    abstract::'Warm white' fluorescent light inhibited the elongation of potato sprouts and reduced the rate at which reserve materials in the mother tuber were mobilized. The evidence indicated that the influence of light on mobilization was independent of light effects on the magnitude of the 'sink' for translocates in the sprout...

    journal_title:Planta

    pub_type: 杂志文章

    doi:10.1007/BF00385292

    authors: Morris DA

    更新日期:1967-09-01 00:00:00