RNMFMDA: A Microbe-Disease Association Identification Method Based on Reliable Negative Sample Selection and Logistic Matrix Factorization With Neighborhood Regularization.

abstract：:Increased use of vancomycin has led to the emergence of vancomycin-intermediate Staphylococcus aureus (VISA). To investigate the mechanism of VISA development, 39 methicillin-susceptible strains and 3 MRSA strains were treated with vancomycin to induce non-susceptibility, and mutations in six genes were analyzed. All ...

journal_title：Frontiers in microbiology

authors： Wang Y,Li X,Jiang L,Han W,Xie X,Jin Y,He X,Wu R

更新日期：2017-01-10 00:00:00

abstract：:Ionic liquids discovery has celebrated 100 years. They consist solely of ions, one of which is typically organic and asymmetrical. Remarkable physical and chemical properties stirred their use as alternative solvents in many chemical processes. The recent demonstration of their occurrence in nature might boost their i...

journal_title：Frontiers in microbiology

authors： Hartmann DO,Petkovic M,Silva Pereira C

更新日期：2016-02-08 00:00:00

abstract：:Salinispora (Micromonosporaceae) is an obligate marine bacterium genus consisting of three species that share over 99% 16S rRNA identity. The genome and biosynthetic pathways of the members of this genus have been widely investigated due to their production of species-specific metabolites. However, despite the species...

journal_title：Frontiers in microbiology

authors： Bauermeister A,Velasco-Alzate K,Dias T,Macedo H,Ferreira EG,Jimenez PC,Lotufo TMC,Lopes NP,Gaudêncio SP,Costa-Lotufo LV

更新日期：2018-12-11 00:00:00

abstract：:The rhizosphere hosts a complex web of prokaryotes interacting with one another that may modulate crucial functions related to plant growth and health. Identifying the key factors structuring the prokaryotic community of the plant rhizosphere is a necessary step toward the enhancement of plant production and crop yiel...

journal_title：Frontiers in microbiology

authors： Floc'h JB,Hamel C,Lupwayi N,Harker KN,Hijri M,St-Arnaud M

更新日期：2020-07-10 00:00:00

abstract：:Campylobacter as an inhabitant of the poultry gastrointestinal tract has proven to be difficult to reduce with most feed additives. In-feed antibiotics have been taken out of poultry diets due to the negative reactions of consumers along with concerns regarding the generation of antibiotic resistant bacteria. Conseque...

journal_title：Frontiers in microbiology

authors： Kim SA,Jang MJ,Kim SY,Yang Y,Pavlidis HO,Ricke SC

更新日期：2019-01-31 00:00:00

abstract：:Leaf-cutter ants in the genus Atta are dominant herbivores in the Neotropics. While most species of Atta cut dicots to incorporate into their fungus gardens, some species specialize on grasses. Here we examine the bacterial community associated with the fungus gardens of grass- and dicot-cutter ants to examine how cha...

journal_title：Frontiers in microbiology

authors： Khadempour L,Fan H,Keefover-Ring K,Carlos-Shanley C,Nagamoto NS,Dam MA,Pupo MT,Currie CR

更新日期：2020-09-24 00:00:00

abstract：:Pseudorabies virus (PRV) is a member of Alphaherpesvirinae subfamily, its neurotropism and latency infection attract the attention of many scientists. PRV tagged with a fluorescent reporter gene as a tracker has been used to analyze neuronal circuits, including anterograde and retrograde. In this study, we used fosmid...

journal_title：Frontiers in microbiology

authors： Qi H,Wu H,Abid M,Qiu HJ,Sun Y

更新日期：2020-06-11 00:00:00

abstract：:Swarming is the most rapid surface motility allowing Pseudomonas aeruginosa bacteria to rapidly colonize new surfaces. However, swarming behavior is affected by environmental factors like ultraviolet irradiation (UVc). UVc radiation is the most disinfection technology usually applied for wastewater and proven to be ef...

journal_title：Frontiers in microbiology

authors： Ghorbal SKB,Chourabi K,Maalej L,Ammar AB,Ouzari HI,Hassen A,Jaafoura H,Chatti A

更新日期：2019-04-02 00:00:00

abstract：:The use of additives in food products has become an important public health concern. In recent reports, dietary emulsifiers have been shown to affect the gut microbiota, contributing to a pro-inflammatory phenotype and metabolic syndrome. So far, it is not yet known whether similar microbiome shifts are observable for...

journal_title：Frontiers in microbiology

authors： Miclotte L,De Paepe K,Rymenans L,Callewaert C,Raes J,Rajkovic A,Van Camp J,Van de Wiele T

更新日期：2020-11-05 00:00:00

abstract：:A Viable but non-culturable (VBNC) state is a bacterial survival strategy under reverse conditions. It poses a significant challenge for public health and food safety. In this study, the effect of external environmental conditions including acid, nutrition, and salt concentrations on the formation of S. aureus VBNC st...

journal_title：Frontiers in microbiology

authors： Li Y,Huang TY,Mao Y,Chen Y,Shi F,Peng R,Chen J,Yuan L,Bai C,Chen L,Wang K,Liu J

更新日期：2020-11-26 00:00:00

abstract：:Campylobacter concisus is a bacterium that is associated with inflammatory bowel disease (IBD). Immunosuppressive drugs including azathioprine (AZA) and mercaptopurine (MP), and anti-inflammatory drug such as 5-aminosalicylic acid (5-ASA) are commonly used to treat patients with IBD. This study aimed to examine the ef...

journal_title：Frontiers in microbiology

authors： Liu F,Ma R,Riordan SM,Grimm MC,Liu L,Wang Y,Zhang L

更新日期：2017-03-29 00:00:00

abstract：:Modified cyclic dipeptides represent a diverse family of microbial secondary metabolites. They display a broad variety of biological and pharmacological activities and have long been recognized as privileged structures with the ability to bind to a wide range of receptors. This is due to their conformationally constra...

journal_title：Frontiers in microbiology

authors： Giessen TW,Marahiel MA

更新日期：2015-07-30 00:00:00

abstract：:The alarming rise in the prevalence of antibiotic resistance among pathogenic bacteria poses a unique challenge for the development of effective therapeutic agents. Antimicrobial peptides (AMPs) have attracted a great deal of attention as a possible solution to the increasing problem of antibiotic-resistant bacteria. ...

journal_title：Frontiers in microbiology

authors： Liu G,Yang F,Li F,Li Z,Lang Y,Shen B,Wu Y,Li W,Harrison PL,Strong PN,Xie Y,Miller K,Cao Z

更新日期：2018-05-29 00:00:00

abstract：:The Solfatara volcano near Naples (Italy), the origin of the recently discovered verrucomicrobial methanotroph Methylacidiphilum fumariolicum SolV was shown to contain ammonium ([Formula: see text]) at concentrations ranging from 1 to 28 mM. Ammonia (NH3) can be converted to toxic hydroxylamine (NH2OH) by the particul...

journal_title：Frontiers in microbiology

authors： Mohammadi SS,Pol A,van Alen T,Jetten MSM,Op den Camp HJM

更新日期：2017-09-27 00:00:00

abstract：:Tumor-targeting bacteria elicit anticancer effects by infiltrating hypoxic regions, releasing toxic agents and inducing immune responses. Although current research has largely focused on the influence of chemical and immunological aspects on the mechanisms of bacterial therapy, the impact of physical effects is still ...

journal_title：Frontiers in microbiology

authors： Mascheroni P,Meyer-Hermann M,Hatzikirou H

更新日期：2020-06-04 00:00:00

abstract：:Xylenes are considered one of the most common hazardous sources of environmental contamination. The biodegradation of these compounds has been often reported, rarer the ability to oxidize the ortho-isomer. Among few o-xylene-degrading bacteria, Rhodococcus opacus R7 is well known for its capability to degrade diverse ...

journal_title：Frontiers in microbiology

authors： Zampolli J,Di Canito A,Manconi A,Milanesi L,Di Gennaro P,Orro A

更新日期：2020-08-12 00:00:00

abstract：:The present work focuses on LC-ESI-MS/MS (liquid chromatography-electrospray ionization-tandem mass spectrometry) analysis of phage-origin tryptic digestion peptides from mastitis-causing Streptococcus spp. isolated from milk. A total of 2,546 non-redundant peptides belonging to 1,890 proteins were identified and anal...

journal_title：Frontiers in microbiology

authors： Abril AG,Carrera M,Böhme K,Barros-Velázquez J,Cañas B,Rama JLR,Villa TG,Calo-Mata P

更新日期：2020-06-09 00:00:00

abstract：:Listeria monocytogenes can contaminate various foods via food processing environments and contamination of raw materials. There is a limited understanding of L. monocytogenes transmission in retail market and the role of insects in L. monocytogenes transmission in the retail environments. To better understand the risk...

journal_title：Frontiers in microbiology

authors： Li H,Wang P,Lan R,Luo L,Cao X,Wang Y,Wang Y,Li H,Zhang L,Ji S,Ye C

更新日期：2018-05-29 00:00:00

abstract：:In this study we addressed the question how a mevalonate (MVA)-auxotrophic Staphylococcus aureusΔmvaS mutant can revert to prototrophy. This mutant couldn't grow in the absence of MVA. However, after a long lag-phase of 4-6 days the mutant adapted from auxotrophic to prototrophic phenotype. During that time, it acquir...

journal_title：Frontiers in microbiology

authors： Reichert S,Ebner P,Bonetti EJ,Luqman A,Nega M,Schrenzel J,Spröer C,Bunk B,Overmann J,Sass P,François P,Götz F

更新日期：2018-07-12 00:00:00

abstract：:The production of pneumocandin B0 is limited by feedback inhibition. Here, low-temperature adaptive laboratory evolution (ALE) was used to improve the production capacity of Glarea lozoyensis by enhancing its membrane permeability. After 50 cycles of ALE, the pneumocandin B0 production of the endpoint strain (ALE50) r...

journal_title：Frontiers in microbiology

authors： Song P,Zhang K,Zhang S,Huang BQ,Ji XJ,Ren LJ,Gao S,Wen JP,Huang H

更新日期：2018-11-21 00:00:00

abstract：:We revisited the mathematical model of the chemostat and examined consequences of considerably decreasing the concentration of limiting nutrient in the inflow for the growth of both the planktonic and biofilm cells in the chemostat tank (fermenter). The model predicts a substantially lower steady-state biomass of plan...

journal_title：Frontiers in microbiology

authors： Legner M,McMillen DR,Cvitkovitch DG

更新日期：2019-04-30 00:00:00

abstract：:Probiotic bacteria have been associated with various health benefits and included in overwhelming number of foods. Today, probiotic supplements are consumed with increasing regularity and record a rapidly growing economic value. With billions of heterogeneous populations of probiotics per serving, probiotic supplement...

journal_title：Frontiers in microbiology

authors： Wang Y,Jiang Y,Deng Y,Yi C,Wang Y,Ding M,Liu J,Jin X,Shen L,He Y,Wu X,Chen X,Sun C,Zheng M,Zhang R,Ye H,An H,Wong A

更新日期：2020-02-28 00:00:00

abstract：:Calcium carbonate (CaCO3) biomineralization has been investigated due to its wide range of scientific and technological implications, however, the molecular mechanisms of this important geomicrobiological process are largely unknown. Here, a urease-positive marine actinobacterium Brevibacterium linens BS258 was demons...

journal_title：Frontiers in microbiology

authors： Zhu Y,Ma N,Jin W,Wu S,Sun C

更新日期：2017-04-06 00:00:00

abstract：:The respiratory diseases caused by rhinovirus, respiratory syncytial virus, and influenza virus represent a large social and financial burden on healthcare worldwide. Although all three viruses have distinctly unique properties in terms of infection and replication, they share the ability to exploit/manipulate the hos...

journal_title：Frontiers in microbiology

authors： Caly L,Ghildyal R,Jans DA

更新日期：2015-08-14 00:00:00

abstract：:Interleukin-10 (IL-10) is one of the most important anti-inflammatory cytokine produced during bacterial infection. Two related phenomena explain the importance of IL-10 production in this context: first, the wide range of cells able to produce this cytokine and second, the wide effects that it causes on target cells....

journal_title：Frontiers in microbiology

authors： Peñaloza HF,Noguera LP,Riedel CA,Bueno SM

更新日期：2018-09-18 00:00:00

abstract：:Ubiquitination is a post-translational modification in which one or more ubiquitin molecules are covalently linked to lysine residues of target proteins. The ubiquitin system plays a key role in the regulation of protein degradation, which contributes to cell signaling, vesicular trafficking, apoptosis, and immune reg...

journal_title：Frontiers in microbiology

authors： Ashizawa A,Higashi C,Masuda K,Ohga R,Taira T,Fujimuro M

更新日期：2012-02-23 00:00:00

abstract：:Ticks transmit a variety of human pathogens, including Borrelia burgdorferi, the etiological agent of Lyme disease. Multiple pathogens that are transmitted simultaneously, termed "coinfections," are of increasing importance and can affect disease outcome in a host. Arthropod immunity is central to pathogen acquisition...

journal_title：Frontiers in microbiology

authors： Oliva Chávez AS,Shaw DK,Munderloh UG,Pedra JH

更新日期：2017-02-14 00:00:00

abstract：:We were able to demonstrate that hydroxyectoine, in contrast to ectoine, is a good glass-forming compound. Fourier transform infrared and spin label electron spin resonance studies of dry ectoine and hydroxyectoine have shown that the superior glass-forming properties of hydroxyectoine result from stronger intermolecu...

journal_title：Frontiers in microbiology

authors： Tanne C,Golovina EA,Hoekstra FA,Meffert A,Galinski EA

更新日期：2014-04-04 00:00:00

abstract：:This study was conducted to determine the antifungal activity of the metabolites from Streptomyces sp. 3-10, and to purify and identify the metabolites. Meanwhile, the taxonomic status of strain 3-10 was re-evaluated. The cultural filtrates of strain 3-10 in potato dextrose broth were extracted with ethyl acetate. The...

journal_title：Frontiers in microbiology

authors： Lyu A,Liu H,Che H,Yang L,Zhang J,Wu M,Chen W,Li G

更新日期：2017-04-03 00:00:00

abstract：:The response of methanogens to thawing permafrost is an important factor for the global greenhouse gas budget. We tracked methanogenic community structure, activity, and abundance along the degradation of sub-Arctic palsa peatland permafrost. We observed the development of pronounced methane production, release, and a...

journal_title：Frontiers in microbiology

authors： Liebner S,Ganzert L,Kiss A,Yang S,Wagner D,Svenning MM

更新日期：2015-05-12 00:00:00