Identification and characterization of microsatellite loci in the rush Juncus effusus (Juncaceae).

Abstract:

PREMISE OF THE STUDY:Microsatellite markers were developed for the common wetland plant Juncus effusus to assess levels of within- and among-population genetic diversity. METHODS AND RESULTS:Using a next-generation sequencing approach we identified new microsatellite loci, from which 23 were further characterized in a large population of J. effusus. Expected heterozygosity ranged from 0 to 0.64 with a mean of 0.407. Inbreeding coefficients (mean = 0.984) were very high, confirming earlier suggestions of an inbred mating system. Cross-amplification was tested in J. conglomeratus, J. inflexus, J. drummondii, and J. filiformis, with best results in the former. CONCLUSIONS:The described microsatellite markers will be helpful in assisting studies on, e.g., reproduction, taxonomy, and phylogeography in J. effusus and related species.

journal_name

Am J Bot

authors

Michalski SG,Durka W

doi

10.3732/ajb.1100322

subject

Has Abstract

pub_date

2012-02-01 00:00:00

pages

e53-5

issue

2

eissn

0002-9122

issn

1537-2197

pii

ajb.1100322

journal_volume

99

pub_type

杂志文章
  • Long-term shifts in the phenology of rare and endemic Rocky Mountain plants.

    abstract:UNLABELLED:• PREMISE OF THE STUDY:Mountainous regions support high plant productivity, diversity, and endemism, yet are highly vulnerable to climate change. Historical records and model predictions show increasing temperatures across high elevation regions including the Southern Rocky Mountains, which can have a stron...

    journal_title:American journal of botany

    pub_type: 杂志文章

    doi:10.3732/ajb.1500156

    authors: Munson SM,Sher AA

    更新日期:2015-08-01 00:00:00

  • Ancient paralogy in the cpDNA trnL-F region in Annonaceae: implications for plant molecular systematics.

    abstract::The plastid trnL-F region has proved useful in molecular phylogenetic studies addressing diverse evolutionary questions from biogeographic history to character evolution in a broad range of plant groups. An important assumption for phylogenetic reconstruction is that data used in combined analyses contain the same phy...

    journal_title:American journal of botany

    pub_type: 杂志文章

    doi:10.3732/ajb.94.6.1003

    authors: Pirie MD,Vargas MP,Botermans M,Bakker FT,Chatrou LW

    更新日期:2007-06-01 00:00:00

  • Mycorrhizal fungi and parasitic plants: Reply.

    abstract::In a recent study (American Journal of Botany 97: 730-737), we described the first case of a tripartite association in natural conditions among a holoparasitic plant (Cytinus), its host Cistaceae species, and mycorrhizal fungi at an anatomical level. In a letter to the editor, Brundrett (American Journal of Botany 98:...

    journal_title:American journal of botany

    pub_type: 评论,杂志文章

    doi:10.3732/ajb.1100036

    authors: de Vega C,Arista M,Ortiz PL,Talavera S

    更新日期:2011-04-01 00:00:00

  • Reaction tissue formation and stem tensile modulus properties in wild-type and p-coumarate-3-hydroxylase downregulated lines of alfalfa, Medicago sativa (Fabaceae).

    abstract::To our knowledge, xylary reaction tissue has never been reported in a forage crop species. Here we report the discovery of reaction tissue in a transgenic line of Medicago sativa (pC3H, for the gene for p-coumarate-3-hydroxylase) with reduced lignin content and in the wild-type (WT) line. Based on microscopy and biome...

    journal_title:American journal of botany

    pub_type: 杂志文章

    doi:10.3732/ajb.94.6.912

    authors: Patten AM,Jourdes M,Brown EE,Laborie MP,Davin LB,Lewis NG

    更新日期:2007-06-01 00:00:00

  • Gravity effects on cellulose assembly.

    abstract::The effect of microgravity on cellulose synthesis using the model system of Acetobacter xylinum was the subject of recent investigations using The National Aeronautics and Space Administration's Reduced Gravity Laboratory, a modified KC-135 aircraft designed to produce 20 sec of microgravity during the top of a parabo...

    journal_title:American journal of botany

    pub_type: 杂志文章

    doi:

    authors: Brown RM Jr,Kudlicka K,Cousins SK,Nagy R

    更新日期:1992-11-01 00:00:00

  • Development of microsatellite markers for Miscanthus sinensis (Poaceae) and cross-amplification in other related species.

    abstract:PREMISE OF THE STUDY:We developed microsatellite loci for the biomass crop Miscanthus sinensis to investigate genetic diversity and population structure of M. sinensis and its closely related species. METHODS AND RESULTS:Fourteen microsatellite loci were identified from an enriched genomic library of M. sinensis and t...

    journal_title:American journal of botany

    pub_type: 杂志文章

    doi:10.3732/ajb.1100040

    authors: Zhou HF,Li SS,Ge S

    更新日期:2011-07-01 00:00:00

  • Limited pollen dispersal, small genetic neighborhoods, and biparental inbreeding in Vallisneria americana.

    abstract:PREMISE OF THE STUDY:Pollen dispersal is a key process that influences ecological and evolutionary dynamics of plant populations by facilitating sexual reproduction and gene flow. Habitat loss and fragmentation have the potential to reduce pollen dispersal within and among habitat patches. We assessed aquatic pollen di...

    journal_title:American journal of botany

    pub_type: 杂志文章

    doi:10.1002/ajb2.1031

    authors: Lloyd MW,Tumas HR,Neel MC

    更新日期:2018-02-01 00:00:00

  • An experimental approach to explain the southern Andes elevational treeline.

    abstract:UNLABELLED:• PREMISE OF THE STUDY:The growth limitation hypothesis (GLH) is the most accepted mechanistic explanation for treeline formation, although it is still uncertain whether it applies across taxa. The successful establishment of Pinus contorta--an exotic conifer species in the southern hemisphere--above the No...

    journal_title:American journal of botany

    pub_type: 杂志文章

    doi:10.3732/ajb.1400166

    authors: Fajardo A,Piper FI

    更新日期:2014-05-01 00:00:00

  • Biocrusts benefit from plant removal.

    abstract:PREMISE OF THE STUDY:Productivity in drylands may depend on the sensitivity of interactions between plants and biocrusts. Given future climate variability, it is essential to understand how interactions may be context-dependent with precipitation regime. Furthermore, little is known about the additional interactions of...

    journal_title:American journal of botany

    pub_type: 杂志文章

    doi:10.1002/ajb2.1120

    authors: Dettweiler-Robinson E,Sinsabaugh RL,Rudgers JA

    更新日期:2018-07-01 00:00:00

  • Gas exchange characteristics of giant cacti species varying in stem morphology and life history strategy.

    abstract:PREMISE OF THE STUDY:Giant cacti species possess long cylindrical stems that store massive amounts of water and other resources to draw on for photosynthesis, growth, and reproduction during hot and dry conditions. Across all giant cacti taxa, stem photosynthetic surface area to volume ratio (S:V) varies by several fol...

    journal_title:American journal of botany

    pub_type: 杂志文章

    doi:10.1002/ajb2.1166

    authors: Huber J,Dettman DL,Williams DG,Hultine KR

    更新日期:2018-10-01 00:00:00

  • Similarities and differences in intrapopulation trait correlations of co-occurring tree species: consistent water-use relationships amid widely different correlation patterns.

    abstract:PREMISE OF THE STUDY:General relationships among functional traits have been identified across species, but the forces shaping these relationships remain largely unknown. Adopting an approach from evolutionary biology, we studied similarities and differences in intrapopulation trait correlations among locally co-occurr...

    journal_title:American journal of botany

    pub_type: 杂志文章

    doi:10.1002/ajb2.1146

    authors: Messier J,Violle C,Enquist BJ,Lechowicz MJ,McGill BJ

    更新日期:2018-09-01 00:00:00

  • Development of the calcium oxalate crystal macropattern in pomegranate (Punica granatum, Punicaceae).

    abstract::Oxalate crystals are very common in angiosperms, but few descriptions of their macropattern (crystal types, their tissue distribution, and development) exist. Because unusually large prismatic crystals and druses, are known from pomegranate, we traced the development of crystal macropattern in various-aged leaf sample...

    journal_title:American journal of botany

    pub_type: 杂志文章

    doi:10.3732/ajb.92.12.1935

    authors: Lersten NR,Horner HT

    更新日期:2005-12-01 00:00:00

  • Agricultural origins from the ground up: archaeological approaches to plant domestication.

    abstract::The timing, geographical locations, causes, and consequences of crop domestication have long been major concerns of archaeologists, and agricultural origins and dispersals are currently more relevant than ever to scientists seeking solutions to elusive problems involving food insecurity and global health disparities. ...

    journal_title:American journal of botany

    pub_type: 杂志文章

    doi:10.3732/ajb.1400145

    authors: Langlie BS,Mueller NG,Spengler RN,Fritz GJ

    更新日期:2014-10-01 00:00:00

  • Hybridization and crossability in Caiophora (Loasaceae subfam. Loasoideae): Are interfertile species and inbred populations results of a recent radiation?

    abstract::Interspecific hybridization is considered a possible mechanism of plant diversification. The Andes are a hotspot of biodiversity, but hybridization in Andean taxa has so far not been investigated intensively. The current study investigates crossability in Caiophora (Loasaceae subfam. Loasoideae) by experimental inters...

    journal_title:American journal of botany

    pub_type: 杂志文章

    doi:10.3732/ajb.2007403

    authors: Ackermann M,Achatz M,Weigend M

    更新日期:2008-09-01 00:00:00

  • Associations between leaf structure, orientation, and sunlight exposure in five Western Australian communities.

    abstract::Five plant communities in Western Australia, as well as selected desert and Rocky Mountain species of the western USA, were surveyed to evaluate associations among leaf structure, orientational properties, and the sunlight exposure and precipitation characteristic of each community. Selected leaf structural features h...

    journal_title:American journal of botany

    pub_type: 杂志文章

    doi:

    authors: Smith W,Bell D,Shepherd K

    更新日期:1998-01-01 00:00:00

  • Phylogenetic relationships in the cactus family (Cactaceae) based on evidence from trnK/ matK and trnL-trnF sequences.

    abstract::Cacti are a large and diverse group of stem succulents predominantly occurring in warm and arid North and South America. Chloroplast DNA sequences of the trnK intron, including the matK gene, were sequenced for 70 ingroup taxa and two outgroups from the Portulacaceae. In order to improve resolution in three major grou...

    journal_title:American journal of botany

    pub_type: 杂志文章

    doi:10.3732/ajb.89.2.312

    authors: Nyffeler R

    更新日期:2002-02-01 00:00:00

  • Interactive effects of redox intensity and phosphate availability on growth and nutrient relations of Cladium jamaicense (Cyperaceae).

    abstract::Expansion of Typha domingensis into areas previously dominated by Cladium jamaicense in the Florida Everglades has been linked to anthropogenic phosphorus (P) enrichment and increased hydroperiod. The principal stress factor for plants in flooded soils is biochemical reduction, the intensity of which is measured as re...

    journal_title:American journal of botany

    pub_type: 杂志文章

    doi:10.3732/ajb.90.5.736

    authors: Lissner J,Mendelssohn IA,Lorenzen B,Brix H,McKee KL,Miao S

    更新日期:2003-05-01 00:00:00

  • Seedling demography in an alpine ecosystem.

    abstract::Seedling establishment has long been believed to be rare on alpine tundra because of predicted life history trade-offs, the clonality of alpine species, and the harshness of the alpine climate. Contrary to the idea that seedlings are rare on alpine tundra, a 4-yr demographic study of seedlings at Niwot Ridge, Colorado...

    journal_title:American journal of botany

    pub_type: 杂志文章

    doi:10.3732/ajb.90.8.1197

    authors: Forbis TA

    更新日期:2003-08-01 00:00:00

  • Is the anthophyte hypothesis alive and well? New evidence from the reproductive structures of Bennettitales.

    abstract::Bennettitales is an extinct group of seed plants with reproductive structures that are similar in some respects to both Gnetales and angiosperms, but systematic relationships among the three clades remain controversial. This study summarizes characters of bennettitalean plants and presents new evidence for the structu...

    journal_title:American journal of botany

    pub_type: 杂志文章

    doi:10.3732/ajb.0800209

    authors: Rothwell GW,Crepet WL,Stockey RA

    更新日期:2009-01-01 00:00:00

  • A new fossil flower from the Turonian of New Jersey: Dressiantha bicarpellata gen. et sp. nov. (Capparales).

    abstract::Recent discoveries of fossil reproductive structures from deposits of the Raritan Formation in New Jersey (Turonian, Upper Cretaceous, ~90 million years BP) include a previously undescribed representative of the Order Capparales. The fossils are usually charcoalified with three-dimensional structure and excellent anat...

    journal_title:American journal of botany

    pub_type: 杂志文章

    doi:

    authors: Gandolfo M,Nixon K,Crepet W

    更新日期:1998-07-01 00:00:00

  • Constructing a broadly inclusive seed plant phylogeny.

    abstract:PREMISE OF THE STUDY:Large phylogenies can help shed light on macroevolutionary patterns that inform our understanding of fundamental processes that shape the tree of life. These phylogenies also serve as tools that facilitate other systematic, evolutionary, and ecological analyses. Here we combine genetic data from pu...

    journal_title:American journal of botany

    pub_type: 杂志文章

    doi:10.1002/ajb2.1019

    authors: Smith SA,Brown JW

    更新日期:2018-03-01 00:00:00

  • Basal cactus phylogeny: implications of Pereskia (Cactaceae) paraphyly for the transition to the cactus life form.

    abstract::The cacti are well-known desert plants, widely recognized by their specialized growth form and essentially leafless condition. Pereskia, a group of 17 species with regular leaf development and function, is generally viewed as representing the "ancestral cactus," although its placement within Cactaceae has remained unc...

    journal_title:American journal of botany

    pub_type: 杂志文章

    doi:10.3732/ajb.92.7.1177

    authors: Edwards EJ,Nyffeler R,Donoghue MJ

    更新日期:2005-07-01 00:00:00

  • Biomechanics and transgenic wood.

    abstract::Wood, or secondary xylem, is composed mostly of three components-cellulose, hemicelluloses, and lignin. Yet this apparent simplicity is deceiving because the sophisticated arrangement of the components on various structural levels, ranging from intricate molecular architecture to defined cellular arrangements to tissu...

    journal_title:American journal of botany

    pub_type: 杂志文章

    doi:10.3732/ajb.93.10.1433

    authors: Koehler L,Telewski FW

    更新日期:2006-10-01 00:00:00

  • Genomics: a potential panacea for the perennial problem.

    abstract::Perennial crops represent important fresh and processed food sources worldwide, but advancements in breeding perennials are often impeded due to their very nature. The perennial crops we rely on most for food take several years to reach production maturity and require large spaces to grow, which make breeding new cult...

    journal_title:American journal of botany

    pub_type: 杂志文章

    doi:10.3732/ajb.1400143

    authors: McClure KA,Sawler J,Gardner KM,Money D,Myles S

    更新日期:2014-10-01 00:00:00

  • Plastid genomes reveal recurrent formation of allopolyploid Fragaria.

    abstract:PREMISE OF THE STUDY:Recurrent formation of polyploid taxa is a common observation in many plant groups. Haploid, cytoplasmic genomes like the plastid genome can be used to overcome the problem of homeologous genes and recombination in polyploid taxa. Fragaria (Rosaceae) contains several octo- and decaploid species. We...

    journal_title:American journal of botany

    pub_type: 杂志文章

    doi:10.1002/ajb2.1085

    authors: Dillenberger MS,Wei N,Tennessen JA,Ashman TL,Liston A

    更新日期:2018-05-01 00:00:00

  • Anatomy and development of fruits of Lauraceae from the Middle Eocene Princeton Chert.

    abstract::Investigations of the Middle Eocene Princeton Chert reveal evidence for the connection of lauraceous flowers to fruits through a developmental series. Youngest fruits are found with attached floral remnants. Later stages show receptacle enlargement, fruit wall thickening, and the development of abundant sclereid clust...

    journal_title:American journal of botany

    pub_type: 杂志文章

    doi:10.3732/ajb.0800318

    authors: Little SA,Stockey RA,Penner B

    更新日期:2009-03-01 00:00:00

  • Molecular phylogenetics of Meliaceae (Sapindales) based on nuclear and plastid DNA sequences.

    abstract::Phylogenetic analyses of Meliaceae, including representatives of all four currently recognized subfamilies and all but two tribes (32 genera and 35 species, respectively), were carried out using DNA sequence data from three regions: plastid genes rbcL, matK (partial), and nuclear 26S rDNA (partial). Individual and com...

    journal_title:American journal of botany

    pub_type: 杂志文章

    doi:10.3732/ajb.90.3.471

    authors: Muellner AN,Samuel R,Johnson SA,Cheek M,Pennington TD,Chase MW

    更新日期:2003-03-01 00:00:00

  • Microsatellite analysis of spatial structure among seedlings in populations of Pinus strobus (pinaceae).

    abstract::In a detailed analysis of how limited seed dispersal can create spatial structuring of genetic variation, several nuclear microsatellites were assayed in seedlings from two forests of Pinus strobus, one old growth (OG) and the other (second site, SS) logged in ca. 1900. By using loci with a large number of alleles and...

    journal_title:American journal of botany

    pub_type: 杂志文章

    doi:10.3732/ajb.91.4.549

    authors: Walter R,Epperson BK

    更新日期:2004-04-01 00:00:00

  • Additive and nonadditive effects of herbivory and competition on tree seedling mortality, growth, and allocation.

    abstract::The interaction between simulated cotyledon herbivory and interspecific competition was studied in a greenhouse experiment using two species of trees, Acer rubrum and Quercus palustris, which commonly invade abandoned agricultural fields. Herbivory treatments were applied as a gradient of cotyledon removal for A. rubr...

    journal_title:American journal of botany

    pub_type: 杂志文章

    doi:

    authors: Meiners SJ,Handel SN

    更新日期:2000-12-01 00:00:00

  • Microsatellite primers in Rhamnus cathartica (Rhamnaceae) and applicability in related taxa to assess hybridization events.

    abstract:UNLABELLED: PREMISE OF THE STUDY:Microsatellite primers were developed in the introduced shrub Rhamnus cathartica L., to investigate potential hybridization events with related taxa as a stimulus of invasive spread. • METHODS AND RESULTS:Using a non-radioactive protocol, 15 primer sets were identified in North Americ...

    journal_title:American journal of botany

    pub_type: 杂志文章

    doi:10.3732/ajb.0900394

    authors: Culley TM,Stewart JR

    更新日期:2010-03-01 00:00:00