Tryptophan 697 modulates hydride and interflavin electron transfer in human methionine synthase reductase.

Abstract:

:Human methionine synthase reductase (MSR), a diflavin oxidoreductase, plays a vital role in methionine and folate metabolism by sustaining methionine synthase (MS) activity. MSR catalyzes the oxidation of NADPH and shuttles electrons via its FAD and FMN cofactors to inactive MS-cob(II)alamin. A conserved aromatic residue (Trp697) positioned next to the FAD isoalloxazine ring controls nicotinamide binding and catalysis in related flavoproteins. We created four MSR mutants (W697S, W697H, S698Δ, and S698A) and studied their associated kinetic behavior. Multiwavelength stopped-flow analysis reveals that NADPH reduction of the C-terminal Ser698 mutants occurs in three resolvable kinetic steps encompassing transfer of a hydride ion to FAD, semiquinone formation (indicating FAD to FMN electron transfer), and slow flavin reduction by a second molecule of NADPH. Corresponding experiments with the W697 mutants show a two-step flavin reduction without an observable semiquinone intermediate, indicating that W697 supports FAD to FMN electron transfer. Accelerated rates of FAD reduction, steady-state cytochrome c(3+) turnover, and uncoupled NADPH oxidation in the S698Δ and W697H mutants may be attributed to a decrease in the energy barrier for displacement of W697 by NADPH. Binding of NADP(+), but not 2',5'-ADP, is tighter for all mutants than for native MSR. The combined studies demonstrate that while W697 attenuates hydride transfer, it ensures coenzyme selectivity and accelerates FAD to FMN electron transfer. Moreover, analysis of analogous cytochrome P450 reductase (CPR) variants points to key differences in the driving force for flavin reduction and suggests that the conserved FAD stacking tryptophan residue in CPR also promotes interflavin electron transfer.

journal_name

Biochemistry

journal_title

Biochemistry

authors

Meints CE,Gustafsson FS,Scrutton NS,Wolthers KR

doi

10.1021/bi2012228

subject

Has Abstract

pub_date

2011-12-27 00:00:00

pages

11131-42

issue

51

eissn

0006-2960

issn

1520-4995

journal_volume

50

pub_type

杂志文章
  • Enhancement of Agkistrodon piscivorus piscivorus venom phospholipase A2 activity toward phosphatidylcholine vesicles by lysolecithin and palmitic acid: studies with fluorescent probes of membrane structure.

    abstract::The activity of phospholipase A2 from snake venom to hydrolyze bilayers of phosphatidylcholines is greatly enhanced by the presence of the hydrolysis products, lysolecithin and fatty acid, in the bilayer. The fluorescence of several probes of membrane structure was used to monitor changes in bilayer physical propertie...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00024a003

    authors: Sheffield MJ,Baker BL,Li D,Owen NL,Baker ML,Bell JD

    更新日期:1995-06-20 00:00:00

  • Identification of human CYP2C19 residues that confer S-mephenytoin 4'-hydroxylation activity to CYP2C9.

    abstract::CYP2C19 is selective for the 4'-hydroxylation of S-mephenytoin while the highly similar CYP2C9 has little activity toward this substrate. To identify critical amino acids determining the specificity of human CYP2C19 for S-mephenytoin 4'-hydroxylation, we constructed chimeras by replacing portions of CYP2C9 containing ...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi001678u

    authors: Tsao CC,Wester MR,Ghanayem B,Coulter SJ,Chanas B,Johnson EF,Goldstein JA

    更新日期:2001-02-20 00:00:00

  • Interaction of cytochrome c with flavocytochrome b2.

    abstract::Flavocytochrome b2 from Saccharomyces cerevisiae couples L-lactate dehydrogenation to cytochrome c reduction. At 25 degrees C, 0.10 M ionic strength, and saturating L-lactate concentration, the turnover rate is 207 s-1 [per cytochrome c reduced; Miles, C. S., Rouviere, N., Lederer, F., Mathews, F. S., Reid, G. A., Bla...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi9522561

    authors: Daff S,Sharp RE,Short DM,Bell C,White P,Manson FD,Reid GA,Chapman SK

    更新日期:1996-05-21 00:00:00

  • Biochemical Characterization of Yeast Xrn1.

    abstract::Messenger RNA degradation is an important component of overall gene expression. During the final step of eukaryotic mRNA degradation, exoribonuclease 1 (Xrn1) carries out 5' → 3' processive, hydrolytic degradation of RNA molecules using divalent metal ion catalysis. To initiate studies of the 5' → 3' RNA decay machine...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/acs.biochem.9b01035

    authors: Langeberg CJ,Welch WRW,McGuire JV,Ashby A,Jackson AD,Chapman EG

    更新日期:2020-04-21 00:00:00

  • Probing the heme axial ligation in the CO-sensing CooA protein with magnetic circular dichroism spectroscopy.

    abstract::The combination of UV/visible/near-IR variable-temperature magnetic circular dichroism (VTMCD) and EPR spectroscopies has been used to investigate the spin states and axial ligation of the heme group in oxidized, reduced, and CO-bound reduced forms of the Rhodospirillum rubrum CO oxidation transcriptional activator pr...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi991303c

    authors: Dhawan IK,Shelver D,Thorsteinsson MV,Roberts GP,Johnson MK

    更新日期:1999-09-28 00:00:00

  • Insulin-like signaling in yeast: modulation of protein phosphatase 2A, protein kinase A, cAMP-specific phosphodiesterase, and glycosyl-phosphatidylinositol-specific phospholipase C activities.

    abstract::Previously, we have described significant effects of human insulin on glucose metabolism in the yeast Saccharomyces cerevisiae under conditions of growth limitation. These regulations apparently rely on a transmembrane receptor capable of binding human insulin and responding by tyrosine/serine phosphorylation of a spe...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi9920432

    authors: Müller G,Grey S,Jung C,Bandlow W

    更新日期:2000-02-15 00:00:00

  • Structures of apo- and holo-tyrosine phenol-lyase reveal a catalytically critical closed conformation and suggest a mechanism for activation by K+ ions.

    abstract::Tyrosine phenol-lyase, a tetrameric pyridoxal 5'-phosphate dependent enzyme, catalyzes the reversible hydrolytic cleavage of L-tyrosine to phenol and ammonium pyruvate. Here we describe the crystal structure of the Citrobacter freundii holoenzyme at 1.9 A resolution. The structure reveals a network of protein interact...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi0601858

    authors: Milić D,Matković-Calogović D,Demidkina TV,Kulikova VV,Sinitzina NI,Antson AA

    更新日期:2006-06-20 00:00:00

  • Dynamics and binding mode of Hoechst 33258 to d(GTGGAATTCCAC)2 in the 1:1 solution complex as determined by two-dimensional 1H NMR.

    abstract::We have investigated the interaction of the bisbenzimidazole derivative Hoechst 33258 with the self-complementary dodecadeoxynucleotide duplex d(GTGGAATTCCAC)2 using one-dimensional (1D) and two-dimensional (2D) proton nuclear magnetic resonance (1H NMR) spectroscopy. To monitor the extent of complex formation, we use...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00112a004

    authors: Fede A,Labhardt A,Bannwarth W,Leupin W

    更新日期:1991-12-03 00:00:00

  • Small Molecule Rescue and Glycosidic Conformational Analysis of the Twister Ribozyme.

    abstract::The number of self-cleaving ribozymes has increased sharply in recent years, giving rise to elaborations of the four known ribozyme catalytic strategies, α, β, γ, and δ. One such extension is utilized by the twister ribozyme, which is hypothesized to conduct δ, or general acid catalysis, via N3 of the syn adenine +1 n...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/acs.biochem.9b00742

    authors: Messina KJ,Kierzek R,Tracey MA,Bevilacqua PC

    更新日期:2019-12-03 00:00:00

  • 3'-Phosphoadenosine 5'-phosphosulfate binding site of flavonol 3-sulfotransferase studied by affinity chromatography and 31P NMR.

    abstract::The function of Lys-59, Arg-141, and Arg-277 in PAPS binding and catalysis of the flavonol 3-sulfotransferase was investigated. Affinity chromatography of conservative mutants with PAPS analogues allowed us to determine that Lys-59 interacts with the 5' portion of the nucleotide, while Arg-141 interacts with the 3' po...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi982239m

    authors: Marsolais F,Laviolette M,Kakuta Y,Negishi M,Pedersen LC,Auger M,Varin L

    更新日期:1999-03-30 00:00:00

  • Organization of the core lipids of lipoproteins from normal and cholesterol-fed rabbits. A proton nuclear magnetic resonance study.

    abstract::When rabbits are fed a diet supplemented with cholesterol, their plasma cholesterol levels increase markedly, and they develop atherosclerosis. Most of the plasma cholesterol exists as cholesteryl esters in very low density lipoproteins (VLDL) and intermediate-density lipoproteins (IDL). The triglyceride content of th...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00268a025

    authors: Kroon PA,Seidenberg J

    更新日期:1982-12-07 00:00:00

  • Structure and inhibition of a quorum sensing target from Streptococcus pneumoniae.

    abstract::Streptococcus pneumoniae 5'-methylthioadenosine/S-adenosylhomocysteine hydrolase (MTAN) catalyzes the hydrolytic deadenylation of its substrates to form adenine and 5-methylthioribose or S-ribosylhomocysteine (SRH). MTAN is not found in mammals but is involved in bacterial quorum sensing. MTAN gene disruption affects ...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi061184i

    authors: Singh V,Shi W,Almo SC,Evans GB,Furneaux RH,Tyler PC,Painter GF,Lenz DH,Mee S,Zheng R,Schramm VL

    更新日期:2006-10-31 00:00:00

  • Solution structure and molecular determinants of hemoglobin binding of the first NEAT domain of IsdB in Staphylococcus aureus.

    abstract::The human pathogen Staphylococcus aureus acquires heme iron from hemoglobin (Hb) via the action of a series of iron-regulated surface determinant (Isd) proteins. The cell wall anchored IsdB protein is recognized as the predominant Hb receptor, and is comprised of two NEAr transporter (NEAT) domains that act in concert...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi5005188

    authors: Fonner BA,Tripet BP,Eilers BJ,Stanisich J,Sullivan-Springhetti RK,Moore R,Liu M,Lei B,Copié V

    更新日期:2014-06-24 00:00:00

  • An unusual catalytic subunit for the cAMP-dependent protein kinase of Dictyostelium discoideum.

    abstract::The cAMP-dependent protein kinase (cAPK) plays an essential role during differentiation and fruit morphogenesis in Dictyostelium discoideum. The presence of an open reading frame on the gene, pkaC (previously named either Dd PK2 or Dd PK3 by different groups), predicts a 73-kDa polypeptide with 54% similarity to the c...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00088a003

    authors: Anjard C,Etchebehere L,Pinaud S,Véron M,Reymond CD

    更新日期:1993-09-21 00:00:00

  • A temperature-induced narrow DNA curvature range sustains the maximum activity of a bacterial promoter in vitro.

    abstract::Among the molecular strategies bacteria have set up to quickly match their transcriptional program to new environments, changes in sequence-mediated DNA curvature play a crucial role. Bacterial promoters, especially those of mesophilic bacteria, are in general preceded by a curved region. The marked thermosensitivity ...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi902003g

    authors: Prosseda G,Mazzola A,Di Martino ML,Tielker D,Micheli G,Colonna B

    更新日期:2010-04-06 00:00:00

  • Mechanism of pigeon liver malic enzyme: kinetics, specificity, and half-site stoichiometry of the alkylation of a cysteinyl residue by the substrate-inhibitor bromopyruvate.

    abstract::Malic enzyme from pigeon liver is alkylated by the substrate analogue bromopyruvate, resulting in the concomitant loss of its oxidative decarboxylase and oxalacetate decarboxylase activities, but not its ability to reduce alpha-keto acids. The inactivation of oxidative decarboxylase activity follows saturation kinetic...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00621a024

    authors: Chang GG,Hsu RY

    更新日期:1977-01-25 00:00:00

  • Kinetic and Spectroscopic Characterization of the Catalytic Ternary Complex of Tryptophan 2,3-Dioxygenase.

    abstract::The first step of the kynurenine pathway for l-tryptophan (l-Trp) degradation is catalyzed by heme-dependent dioxygenases, tryptophan 2,3-dioxygenase (TDO) and indoleamine 2,3-dioxygenase. In this work, we employed stopped-flow optical absorption spectroscopy to study the kinetic behavior of the Michaelis complex of C...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/acs.biochem.0c00179

    authors: Geng J,Weitz AC,Dornevil K,Hendrich MP,Liu A

    更新日期:2020-08-04 00:00:00

  • SecA insertion into phospholipids is stimulated by negatively charged lipids and inhibited by ATP: a monolayer study.

    abstract::SecA-lipid interactions are believed to be important for the translocation of precursor proteins across the inner membrane of Escherichia coli [Lill, R., Dowhan, W., & Wickner, W. (1990) Cell 60, 271-280]. SecA insertion into the phospholipid bilayer could a role in this process. We investigated this possibility by st...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00119a021

    authors: Breukink E,Demel RA,de Korte-Kool G,de Kruijff B

    更新日期:1992-02-04 00:00:00

  • Preferential assembly of the tropomyosin heterodimer: equilibrium studies.

    abstract::Thermal unfolding/refolding studies of the three tropomyosin dimers, alpha alpha, alpha beta, and beta beta, from chicken gizzard muscle were performed to explain the preferential assembly of alpha- and beta-tropomyosin subunits into heterodimers, alpha beta [Lehrer, S. S., & Qian, Y. (1989) J. Biol. Chem. 265, 1134]....

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00237a007

    authors: Lehrer SS,Stafford WF 3rd

    更新日期:1991-06-11 00:00:00

  • Critical nature of a specific uridine O2-carbonyl for cleavage by the hammerhead ribozyme.

    abstract::Three modified hammerhead ribozyme/substrate complexes have been prepared in which individual uridine O2-carbonyls have been eliminated. The modified complexes were chemically synthesized with the substitution of a single 2-pyridone (2P) base analogue for residues U4, U7, and U16.1. Steady-state kinetic analyses indic...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi982977a

    authors: Bevers S,Ha SB,McLaughlin LW

    更新日期:1999-06-15 00:00:00

  • The Conformational Change in Elongation Factor Tu Involves Separation of Its Domains.

    abstract::Elongation factor Tu (EF-Tu) is a highly conserved GTPase that is responsible for supplying the aminoacylated tRNA to the ribosome. Upon binding to the ribosome, EF-Tu undergoes GTP hydrolysis, which drives a major conformational change, triggering the release of aminoacylated tRNA to the ribosome. Using a combination...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/acs.biochem.7b00591

    authors: Lai J,Ghaemi Z,Luthey-Schulten Z

    更新日期:2017-11-14 00:00:00

  • G1- and S-phase syntheses of histones H1 and H1o in mitotically selected CHO cells: utilization of high-performance liquid chromatography.

    abstract::We have employed high-performance liquid chromatography (HPLC) to investigate the syntheses of histones H1 and H1o as synchronized cells traverse from mitosis to S phase. Chinese hamster (line CHO) cells were synchronized by mitotic selection, and, at appropriate times, they were pulse labeled for 1 h with [3H]lysine....

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00329a031

    authors: D'Anna JA,Thayer MM,Tobey RA,Gurley LR

    更新日期:1985-04-09 00:00:00

  • Smaller discoidal high-density lipoprotein particles form saddle surfaces, but not planar bilayers.

    abstract::Discoidal high-density lipoprotein (HDL) particles are known to be fractionalized into several discrete populations in plasma and to differ in behavior according to size; however, their structural differences and the factors regulating their size are less understood. In this study, we prepared several reconstituted HD...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi900785x

    authors: Miyazaki M,Nakano M,Fukuda M,Handa T

    更新日期:2009-08-18 00:00:00

  • Investigation of the role and mechanism of IF1 and STF1 proteins, twin inhibitory peptides which interact with the yeast mitochondrial ATP synthase.

    abstract::Inhibition of the yeast F(0)F(1)-ATP synthase by the regulatory peptides IF1 and STF1 was studied using intact mitochondria and submitochondrial particles from wild-type cells or from mutants lacking one or both peptides. In intact mitochondria, endogenous IF1 only inhibited uncoupled ATP hydrolysis and endogenous STF...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi034394t

    authors: Venard R,Brèthes D,Giraud MF,Vaillier J,Velours J,Haraux F

    更新日期:2003-06-24 00:00:00

  • Disulfide bond rearrangement during formation of the chorionic gonadotropin beta-subunit cystine knot in vivo.

    abstract::The intracellular kinetic folding pathway of the human chorionic gonadotropin beta-subunit (hCG-beta) reveals the presence of a disulfide between Cys residues 38-57 that is not detected by X-ray analysis of secreted hCG-beta. This led us to propose that disulfide rearrangement is an essential feature of cystine knot f...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi049856x

    authors: Wilken JA,Bedows E

    更新日期:2004-05-04 00:00:00

  • Basic and acidic regions flanking the HMG-box domain of maize HMGB1 and HMGB5 modulate the stimulatory effect on the DNA binding of transcription factor Dof2.

    abstract::The chromatin-associated high-mobility group (HMG) proteins of the plant HMGB family are characterized by a central HMG-box domain that is flanked by a basic N-terminal and an acidic C-terminal domain. By functional interaction with certain transcription factors, HMGB proteins contribute to transcriptional regulation....

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi6024947

    authors: Grasser M,Christensen JM,Peterhänsel C,Grasser KD

    更新日期:2007-05-29 00:00:00

  • Further studies on calf thymus DNA polymerase delta purified to homogeneity by a new procedure.

    abstract::DNA polymerase delta from calf thymus has been purified to apparent homogeneity by a new procedure which utilizes hydrophobic interaction chromatography with phenyl-Sepharose at an early step to separate most of the calcium-dependent protease activity from DNA polymerase delta and alpha. The purified enzyme migrates a...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00304a003

    authors: Lee MY,Tan CK,Downey KM,So AG

    更新日期:1984-04-24 00:00:00

  • Pyruvate dehydrogenase kinase isoform 2 activity limited and further inhibited by slowing down the rate of dissociation of ADP.

    abstract::Pyruvate dehydrogenase kinase 2 (PDK2) activity is enhanced by the dihydrolipoyl acetyltransferase core (E2 60mer) that binds PDK2 and a large number of its pyruvate dehydrogenase (E1) substrate. With E2-activated PDK2, K(+) at approximately 90 mM and Cl(-) at approximately 60 mM decreased the K(m) of PDK2 for ATP and...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi049488x

    authors: Bao H,Kasten SA,Yan X,Roche TE

    更新日期:2004-10-26 00:00:00

  • 31P NMR visibility and characterization of rat liver mitochondrial matrix adenine nucleotides.

    abstract::Compartmentation and NMR visibility of mitochondrial adenine nucleotides were quantitated in isolated rat liver mitochondria respiring on succinate and glutamate in vitro at 8 and 25 degrees C. Intra- and extramitochondrial nucleotides were discriminated by adding the chelator trans-1,2-diaminocyclohexane-N,N,N',N'-te...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00436a030

    authors: Hutson SM,Berkich D,Williams GD,LaNoue KF,Briggs RW

    更新日期:1989-05-16 00:00:00

  • Escherichia coli cAMP receptor protein-DNA complexes. 1. Energetic contributions of half-sites and flanking sequences in DNA recognition.

    abstract::In Escherichia coli, the cyclic AMP receptor protein (CRP) serves as a sensor of the intracellular level of cyclic AMP. At increasing concentrations of cyclic AMP, CRP becomes activated upon binding a cyclic AMP molecule. The activated CRP is capable of regulating the expression of more than 20 genes by binding to spe...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi972450i

    authors: Pyles EA,Chin AJ,Lee JC

    更新日期:1998-04-14 00:00:00