The betagamma-crystallin superfamily contains a universal motif for binding calcium.

Abstract:

:The betagamma-crystallin superfamily consists of evolutionarily related proteins with domain topology similar to lens beta- and gamma-crystallins, formed from duplicated Greek key motifs. Ca(2+) binding was found in a few betagamma-crystallin members earlier, although its prevalence and diversity as inherent molecular properties among members of the superfamily are not well studied. To increase our understanding of Ca(2+) binding in various betagamma-crystallins, we undertook comprehensive structural and Ca(2+)-binding studies of seven members of the superfamily from bacteria, archaea, and vertebrates, including determination of high-resolution crystal structures of three proteins. Our structural observations show that the determinants of Ca(2+) coordination remain conserved in the form of an N/D-N/D-#-I-S/T-S motif in all domains. However, binding of Ca(2+) elicits varied physicochemical responses, ranging from passive sequestration to active stabilization. The motif in this superfamily is modified in some members like lens crystallins where Ca(2+)-binding abilities are partly or completely compromised. We show that reduction or loss of Ca(2+) binding in members of the superfamily, particularly in vertebrates, is due to the selective presence of unfavorable amino acids (largely Arg) at key Ca(2+)-ligation positions and that engineering of the canonical Ca(2+)-binding residues can confer binding activity on an otherwise inactive domain. Through this work, we demonstrate that betagamma-crystallins with the N/D-N/D-#-I-S/T-S motif form an extensive set of Ca(2+)-binding proteins prevalent in all of the three kingdoms of life.

journal_name

Biochemistry

journal_title

Biochemistry

authors

Aravind P,Mishra A,Suman SK,Jobby MK,Sankaranarayanan R,Sharma Y

doi

10.1021/bi9017076

subject

Has Abstract

pub_date

2009-12-29 00:00:00

pages

12180-90

issue

51

eissn

0006-2960

issn

1520-4995

journal_volume

48

pub_type

杂志文章
  • Iron binding to horse spleen apoferritin: a vanadyl ENDOR spin probe study.

    abstract::The role of the protein shell in the formation of the hydrous ferric oxide core of ferritin is poorly understood. A VO2+ spin probe study was undertaken to characterize the initial complex of Fe2+ with horse spleen apoferritin (96% L-subunits). A competitive binding study of VO2+ and Fe2+ showed that the two metals co...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00102a012

    authors: Hanna PM,Chasteen ND,Rottman GA,Aisen P

    更新日期:1991-09-24 00:00:00

  • Decoding protein-protein interactions through combinatorial chemistry: sequence specificity of SHP-1, SHP-2, and SHIP SH2 domains.

    abstract::A general, combinatorial library method for the rapid identification of high-affinity peptide ligands of protein modular domains is reported. The validity of this method has been demonstrated by determining the sequence specificity of four Src homology 2 (SH2) domains derived from protein tyrosine phosphatase SHP-1 an...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi051408h

    authors: Sweeney MC,Wavreille AS,Park J,Butchar JP,Tridandapani S,Pei D

    更新日期:2005-11-15 00:00:00

  • Mapping psoralen cross-links at the nucleotide level in mammalian cells: suppression of cross-linking at transcription factor- or nucleosome-binding sites.

    abstract::We have developed a new genomic sequencing method for detecting, with resolution at the nucleotide level, the interstrand DNA cross-links induced by 4,5',8-trimethylpsoralen along single-copy genes in mammalian cells. The cross-links (diadducts) initially formed are converted into monoadducts by alkali reversal prior ...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi002539f

    authors: Komura J,Ikehata H,Hosoi Y,Riggs AD,Ono T

    更新日期:2001-04-03 00:00:00

  • Enzymatic activation of DNA cleavage by dynemicin A and synthetic analogs.

    abstract::Dynemicin A (1), a member of the enediyne family of natural products, binds to double-stranded DNA (K(B) approximately 10(4) M(-1)) and in the presence of millimolar concentrations of a reducing cofactor such as NADPH or GSH reacts to cleave DNA. In this work, we show that the two flavin-based enzymes ferredoxin-NADP+...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi962976n

    authors: Myers AG,Kort ME,Cohen SB,Tom NJ

    更新日期:1997-04-01 00:00:00

  • Human sterol carrier protein x/sterol carrier protein 2 gene has two promoters.

    abstract::The human sterol carrier protein x (SCPx)/sterol carrier protein 2 (SCP2) gene gives rise to two mRNAs: a 2.8 kb mRNA encoding SCPx, a peroxisome-associated thiolase, and a 1.5 kb mRNA encoding SCP2, which is thought to be an intracellular lipid transfer protein. The SCPx/SCP2 gene is highly expressed in organs involv...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00033a042

    authors: Ohba T,Holt JA,Billheimer JT,Strauss JF 3rd

    更新日期:1995-08-22 00:00:00

  • Mechanistic studies of the methyltransferase from Clostridium thermoaceticum: origin of the pH dependence of the methyl group transfer from methyltetrahydrofolate to the corrinoid/iron-sulfur protein.

    abstract::A methyltetrahydrofolate:corrinoid/iron-sulfur protein methyltransferase (MeTr) from Clostridium thermoaceticum catalyzes the transfer of the N5 methyl group from (6S)-methyltetrahydrofolate (CH3-H4folate) to the cobalt center of a corrinoid/iron-sulfur protein (C/Fe-SP). The methylcobamide product is the first in a s...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00046a013

    authors: Zhao S,Roberts DL,Ragsdale SW

    更新日期:1995-11-21 00:00:00

  • Structure-function relationships in sorcin, a member of the penta EF-hand family. Interaction of sorcin fragments with the ryanodine receptor and an Escherichia coli model system.

    abstract::Sorcin, a 21.6 kDa cytosolic EF-hand protein which undergoes a Ca(2+)-induced translocation from cytoplasm to membranes, has been assigned to the newly defined penta EF-hand family. A molecular model of the C-terminal Ca(2+)-binding domain has been generated using as a template the X-ray coordinates of the correspondi...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi991648v

    authors: Zamparelli C,Ilari A,Verzili D,Giangiacomo L,Colotti G,Pascarella S,Chiancone E

    更新日期:2000-02-01 00:00:00

  • Inhibition of neuronal sodium and potassium ion activated adenosinetriphosphatase by pyrithiamin.

    abstract::Since one of the electrophysiological effects of pyrithiamin, an antimetabolite of thiamin, suggested an interference with sodium pump mechanisms, the effect of pyrithiamin on Na+,K+-ATPase was investigated. We found that whereas preincubation of the antimetabolite with nonneuronal preparations of Na+,K+-ATPase produc...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00278a023

    authors: Matsuda T,Cooper JR

    更新日期:1983-04-26 00:00:00

  • Membrane fusion and inverted phases.

    abstract::We have found a correlation between liposome fusion kinetics and lipid phase behavior for several inverted phase forming lipids. N-Methylated dioleoylphosphatidylethanolamine (DOPE-Me), or mixtures of dioleoylphosphatidylethanolamine (DOPE) and dioleoylphosphatidylcholine (DOPC), will form an inverted hexagonal phase ...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00435a011

    authors: Ellens H,Siegel DP,Alford D,Yeagle PL,Boni L,Lis LJ,Quinn PJ,Bentz J

    更新日期:1989-05-02 00:00:00

  • Increased β-Sheet Dynamics and D-E Loop Repositioning Are Necessary for Cu(II)-Induced Amyloid Formation by β-2-Microglobulin.

    abstract::β-2-Microglobulin (β2m) forms amyloid fibrils in the joints of patients undergoing dialysis treatment as a result of kidney failure. One of the ways in which β2m can be induced to form amyloid fibrils in vitro is via incubation with stoichiometric amounts of Cu(II). To better understand the structural changes caused b...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/acs.biochem.6b01198

    authors: Borotto NB,Zhang Z,Dong J,Burant B,Vachet RW

    更新日期:2017-02-28 00:00:00

  • Mechanism Underlying Anti-Markovnikov Addition in the Reaction of Pentalenene Synthase.

    abstract::Most terpene synthase reactions follow Markovnikov rules for formation of high-energy carbenium ion intermediates. However, there are notable exceptions. For example, pentalenene synthase (PS) undergoes an initial anti-Markovnikov cyclization reaction followed by a 1,2-hydride shift to form an intermediate humulyl cat...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/acs.biochem.0c00518

    authors: Matos JO,Kumar RP,Ma AC,Patterson M,Krauss IJ,Oprian DD

    更新日期:2020-09-08 00:00:00

  • Structure of the human pancreatic cholesterol esterase gene.

    abstract::The gene for human pancreatic cholesterol esterase consists of 11 exons and 10 introns and is 9.2 kb in length. The last and longest exon (841 nucleotides) is unique to the human gene. Functional amino acids are encoded on separate exons. The leader sequence is encoded by a single exon which carries two additional N-t...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00141a017

    authors: Kumar BV,Aleman-Gomez JA,Colwell N,Lopez-Candales A,Bosner MS,Spilburg CA,Lowe M,Lange LG

    更新日期:1992-07-07 00:00:00

  • G-protein-dependent cell surface dynamics of the human serotonin1A receptor tagged to yellow fluorescent protein.

    abstract::Serotonergic signaling appears to play a key role in the generation and modulation of various cognitive, behavioral, and developmental processes. The serotonin(1A) receptor is an important member of the superfamily of seven transmembrane domain G-protein-coupled receptors and is the most extensively studied among the ...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi0480887

    authors: Pucadyil TJ,Kalipatnapu S,Harikumar KG,Rangaraj N,Karnik SS,Chattopadhyay A

    更新日期:2004-12-21 00:00:00

  • Identification of effector binding sites on S100 beta: studies with guanylate cyclase and p80, a retinal phosphoprotein.

    abstract::S100 beta is a calcium-binding protein, which regulates the activities of several enzymes and inhibits the phosphorylation of a variety of protein kinase C substrates in a calcium-dependent manner. The protein was recently found to activate a retinal membrane guanylate cyclase, and in this paper, we report that it inh...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi9802115

    authors: Pozdnyakov N,Margulis A,Sitaramayya A

    更新日期:1998-07-28 00:00:00

  • Perturbing the water cavity surrounding the manganese cluster by mutating the residue D1-valine 185 has a strong effect on the water oxidation mechanism of photosystem II.

    abstract::The active site of water oxidation in Photosystem II (PSII) is a Mn4CaO5 cluster that is located in a cavity between the D1 and CP43 protein subunits by which it is coordinated. The remainder of this cavity is filled with water molecules, which serve as a source of substrate and participate in poorly understood hydrog...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi400930g

    authors: Dilbeck PL,Bao H,Neveu CL,Burnap RL

    更新日期:2013-10-01 00:00:00

  • Stereochemical Consequences of Vinylpyruvate Hydratase-Catalyzed Reactions.

    abstract::A stereochemical analysis has been carried out on two vinylpyruvate hydratases (VPH), which convert 2-hydroxy-2,4-pentadienoate to 2-keto-4S-hydroxypentanoate in meta-fission pathways. Bacterial strains with this pathway can use aromatic compounds as sole sources of energy and carbon. The analysis was carried out usin...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/acs.biochem.6b00552

    authors: Johnson WH Jr,Stack TM,Taylor SM,Burks EA,Whitman CP

    更新日期:2016-07-26 00:00:00

  • The basic helix-loop-helix region of human neurogenin 1 is a monomeric natively unfolded protein which forms a "fuzzy" complex upon DNA binding.

    abstract::Neuronal specification is regulated by the activity of transcription factors containing the basic helix-loop-helix motif (bHLH); these regulating proteins include, among others, the neurogenin (Ngn) family, related to the atonal family of genes. Neurogenin 1 (NGN1) is a 237-residue protein that contains a bHLH domain ...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi901616z

    authors: Aguado-Llera D,Goormaghtigh E,de Geest N,Quan XJ,Prieto A,Hassan BA,Gómez J,Neira JL

    更新日期:2010-03-02 00:00:00

  • Interactions of human melanocortin 4 receptor with nonpeptide and peptide agonists.

    abstract::Specific interactions of human melanocortin-4 receptor (hMC4R) with its nonpeptide and peptide agonists were studied using alanine-scanning mutagenesis. The binding affinities and potencies of two synthetic, small-molecule agonists (THIQ, MB243) were strongly affected by substitutions in transmembrane alpha-helices (T...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi0501840

    authors: Pogozheva ID,Chai BX,Lomize AL,Fong TM,Weinberg DH,Nargund RP,Mulholland MW,Gantz I,Mosberg HI

    更新日期:2005-08-30 00:00:00

  • Structure and vectorial properties of proteoliposomes containing cytochrome oxidase in the submitochondrial orientation.

    abstract::Cytochrome oxidase proteoliposomes were prepared from bovine heart oxidase. Size distributions determined by quasi-elastic light scattering (QELS) showed that there was a small population of large vesicles (120-200-nm diameter) and a large population of small vesicles (50-100-nm diameter). Trapping cytochrome c inside...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00468a010

    authors: Cooper CE,Nicholls P

    更新日期:1990-04-24 00:00:00

  • Mechanism of DNA-dependent protein kinase inhibition by cis-diamminedichloroplatinum(II)-damaged DNA.

    abstract::We have determined the mechanism of DNA-dependent protein kinase (DNA-PK) inhibition by cis-diamminedichloroplatinum(II)-(cisplatin-) damaged DNA. We previously have demonstrated that Ku, the DNA binding subunit of DNA-PK, is capable of binding to DNA duplexes globally damaged with cisplatin but was unable to stimulat...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi963124q

    authors: Turchi JJ,Patrick SM,Henkels KM

    更新日期:1997-06-17 00:00:00

  • Sequential DNA Binding and Dimerization Processes of the Photosensory Protein EL222.

    abstract::EL222 is a blue light sensor protein, which consists of a light-oxygen-voltage domain as a light sensor and a LuxR-type helix-turn-helix DNA-binding domain. The reaction dynamics of the protein-DNA binding were observed for the first time using the time-resolved transient grating method. The reaction scheme was determ...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/acs.biochem.7b01206

    authors: Takakado A,Nakasone Y,Terazima M

    更新日期:2018-03-13 00:00:00

  • Isolation and characterization of a dog serum lipoprotein having apolipoprotein A-I as its predominant protein constituent.

    abstract::The serum high density lipoproteins (HDL) of normolipemic dogs (beagles) were isolated in the density range of p 1.063 to 1.21 g/ml, and characterized in terms of composition and physical properties (flotation and diffusion coefficients, partial specific volume, molecular weight, electrophoretic mobility, ultraviolet ...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00654a022

    authors: Edelstein C,Lewis LL,Shainoff JR,Naito H,Scanu AM

    更新日期:1976-05-04 00:00:00

  • Stoichiometry and specificity of lipid-protein interaction with myelin proteolipid protein studied by spin-label electron spin resonance.

    abstract::The interaction of spin-labeled lipids with the myelin proteolipid apoprotein in complexes with dimyristoylphosphatidylcholine of varying lipid/protein ratios has been studied with electron spin resonance spectroscopy. A first shell of approximately 10 lipids per 25 000-dalton protein is found to be motionally restric...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00300a011

    authors: Brophy PJ,Horváth LI,Marsh D

    更新日期:1984-02-28 00:00:00

  • Kinetics of the subtransition of asymmetrically substituted phosphatidylcholines.

    abstract::The thermodynamics and kinetics of the subtransition L epsilon----P beta of sonicated unilamellar vesicles of 1-myristoyl-2-stearoylphosphatidylcholine (1M-2S-PC) and of 1-stearoyl-2-myristoylphosphatidylcholine (1S-2M-PC) were studied by equilibrium cooling curves and temperature-jump relaxation spectrometry with an ...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00313a009

    authors: Tümmler B,Herrmann U,Maass G,Eibl H

    更新日期:1984-08-28 00:00:00

  • Phosphorus-31 nuclear magnetic resonance studies of the binding of nucleotides to NADP+-specific isocitrate dehydrogenase.

    abstract::The interaction of the 2'-phosphate-containing nucleotides (NADP+, NADPH, 2'-phosphoadenosine 5'-diphosphoribose, and adenosine 2',5'-bisphosphate) with NADP+ -specific isocitrate dehydrogenase was studied by using 31P NMR spectroscopy. The separate resonances corresponding to free and bound nucleotides, characteristi...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00303a015

    authors: Mas MT,Colman RF

    更新日期:1984-04-10 00:00:00

  • Use of pH and kinetic isotope effects to establish chemistry as rate-limiting in oxidation of a peptide substrate by LSD1.

    abstract::The mechanism of oxidation of a peptide substrate by the flavoprotein lysine-specific demethylase (LSD1) has been examined using the effects of pH and isotopic substitution on steady-state and rapid-reaction kinetic parameters. The substrate contained the 21 N-terminal residues of histone H3, with a dimethylated lysyl...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi900499w

    authors: Gaweska H,Henderson Pozzi M,Schmidt DM,McCafferty DG,Fitzpatrick PF

    更新日期:2009-06-16 00:00:00

  • Active water in protein-protein communication within the membrane: the case of SRII-HtrII signal relay.

    abstract::We detect internal water molecules in a membrane-embedded receptor-transducer complex and demonstrate water structure changes during formation of the signaling state. Time-resolved FTIR spectroscopy reveals stimulus-induced repositioning of one or more structurally active water molecules to a significantly more hydrop...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi802180a

    authors: Bergo VB,Spudich EN,Spudich JL,Rothschild KJ

    更新日期:2009-02-10 00:00:00

  • N-(1-pyrene)maleimide: a fluorescent cross-linking reagent.

    abstract::N-(1-Pyrene)maleimide is nonfluorescent in aqueous solution but forms strongly fluorescent adducts with sulfhydryl groups of organic compounds or proteins. The conjugation reactions of N-(1-pyrene)maleimide are relatively fast and can be monitored by the increase in fluorescence intensity of the pyrene chromophore. In...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00658a025

    authors: Wu CW,Yarbrough LR

    更新日期:1976-06-29 00:00:00

  • Characterization and kinetic mechanism of catalytic domain of human vascular endothelial growth factor receptor-2 tyrosine kinase (VEGFR2 TK), a key enzyme in angiogenesis.

    abstract::Vascular endothelial growth factor (VEGF) is a dimeric protein which induces formation of new blood vessels (angiogenesis) through binding to VEGF-receptor-2 tyrosine kinase (VEGFR2 TK) or KDR (kinase insert domain-containing receptor) on the surface of endothelial cells. Angiogenesis has been shown to be essential fo...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi981291f

    authors: Parast CV,Mroczkowski B,Pinko C,Misialek S,Khambatta G,Appelt K

    更新日期:1998-11-24 00:00:00

  • Sequence of a rabbit anti-Micrococcus lysodeikticus antibody light chain.

    abstract::The complete sequence of rabbit antibody light-chain L 120 has been elucidated. The antibody was raised against Micrococcus lysodeikticus bacteria and is specific for the external part of the cell wall. All protein used in this work was obtained from a single 50-mL bleeding. The variable region of L 120 is compared to...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00613a031

    authors: Van Hoegaerden M,Strosberg AD

    更新日期:1978-10-03 00:00:00