Semiparametric regression of multidimensional genetic pathway data: least-squares kernel machines and linear mixed models.

abstract：:In binomial group testing, unlike one-at-a-time testing, the test unit consists of a group of individuals, and each group is declared to be defective or nondefective. A defective group is one that is presumed to include one or more defective (e.g., infected, positive) individuals and a nondefective group to contain on...

journal_title：Biometrics

authors： Hung M,Swallow WH

更新日期：1999-03-01 00:00:00

abstract：:In studying rates of occurrence and progression of lesions (or tumors), it is typically not possible to obtain exact onset times for each lesion. Instead, data consist of the number of lesions that reach a detectable size between screening examinations, along with measures of the size/severity of individual lesions at...

journal_title：Biometrics

authors： Dunson DB,Holloman C,Calder C,Gunn LH

更新日期：2004-09-01 00:00:00

abstract：:Multivariate failure time data arise when each study subject may experience several types of event or when there are clusterings of observational units such that failure times within the same cluster are correlated. The failure times are often subject to interval grouping or have truly discrete measurements. In this p...

journal_title：Biometrics

authors： Guo SW,Lin DY

更新日期：1994-09-01 00:00:00

abstract：:Logistic regression is a popular tool for risk analysis in medical and population health science. With continuous response data, it is common to create a dichotomous outcome for logistic regression analysis by specifying a threshold for positivity. Fitting a linear regression to the nondichotomized response variable a...

journal_title：Biometrics

authors： Schörgendorfer A,Branscum AJ,Hanson TE

更新日期：2013-06-01 00:00:00

abstract：:Parametric survival functions are usually defined as explicit functions of time and covariates. However, consideration of some simple differential equations describing certain survival curves leads to a descriptive equation which cannot be explicitly solved for the survival function. Nevertheless, the resulting surviv...

journal_title：Biometrics

authors： Piantadosi S,Crowley J

更新日期：1995-03-01 00:00:00

abstract：:Objective measures of oxygen consumption and carbon dioxide production by mammals are used to predict their energy expenditure. Since energy expenditure is not directly observable, it can be viewed as a latent construct with multiple physical indirect measures such as respiratory quotient, volumetric oxygen consumptio...

journal_title：Biometrics

authors： Tekwe CD,Zoh RS,Bazer FW,Wu G,Carroll RJ

更新日期：2018-03-01 00:00:00

abstract：:The focus of this article is on the nature of the likelihood associated with N-mixture models for repeated count data. It is shown that the infinite sum embedded in the likelihood associated with the Poisson mixing distribution can be expressed in terms of a hypergeometric function and, thence, in closed form. The res...

journal_title：Biometrics

authors： Haines LM

更新日期：2016-12-01 00:00:00

abstract：:Eguchi and Matsuura (1990, Biometrics 46, 415-426) noted that the generalized Stevens test statistic for the Hardy-Weinberg law for human leukocyte antigen (HLA) data yields an excessively large value when no double blanks are observed. In this paper, we investigated this aberrant case. The inflated value of the test ...

journal_title：Biometrics

authors： Nam J

更新日期：1995-03-01 00:00:00

abstract：:Restricted maximum likelihood (REML) is now well established as a method for estimating the parameters of the general Gaussian linear model with a structured covariance matrix, in particular for mixed linear models. Conventionally, estimates of precision and inference for fixed effects are based on their asymptotic di...

journal_title：Biometrics

authors： Kenward MG,Roger JH

更新日期：1997-09-01 00:00:00

abstract：:We propose a generalized linear mixed model to estimate and test marginal effects on titers repeatedly measured by serial dilution assays. The link is log-log and the titer is assumed to follow a gamma distribution. The parameters are estimated by generalized estimating equations. The marginal effects are tested by me...

journal_title：Biometrics

authors： Bloch J,Chavance M

更新日期：1998-06-01 00:00:00

abstract：:Many problems that appear in biomedical decision-making, such as diagnosing disease and predicting response to treatment, can be expressed as binary classification problems. The support vector machine (SVM) is a popular classification technique that is robust to model misspecification and effectively handles high-dime...

journal_title：Biometrics

authors： Luckett DJ,Laber EB,El-Kamary SS,Fan C,Jhaveri R,Perou CM,Shebl FM,Kosorok MR

更新日期：2020-08-31 00:00:00

abstract：:Array-based CGH experiments are designed to detect genomic aberrations or regions of DNA copy-number variation that are associated with an outcome, typically a state of disease. Most of the existing statistical methods target on detecting DNA copy number variations in a single sample or array. We focus on the detectio...

journal_title：Biometrics

authors： Hu J,Zhang L,Wang HJ

更新日期：2016-09-01 00:00:00

abstract：:We propose group sequential tests of the equivalence of two treatments based on ideas related to repeated confidence intervals. These tests adapt readily to unpredictable group sizes, to the possibility of continuing even though a boundary has been crossed, and to nonnormal observations. In comparing two binomial dist...

journal_title：Biometrics

authors： Jennison C,Turnbull BW

更新日期：1993-03-01 00:00:00

abstract：:An efficient method is presented for analyses of death rated in one-way or cross-classified experiments where expected survival time for a patient at time of entry on trial is a function of observable covariates. The survival-time distribution used is a Weibull form of Cox's (1972) model. The analysis proceeds in two ...

journal_title：Biometrics

authors： Williams JS

更新日期：1978-06-01 00:00:00

abstract：:We estimate how the effect of antiretroviral treatment depends on the time from HIV-infection to initiation of treatment, using observational data. A major challenge in making inferences from such observational data arises from biases associated with the nonrandom assignment of treatment, for example bias induced by d...

journal_title：Biometrics

authors： Lok JJ,DeGruttola V

更新日期：2012-09-01 00:00:00

abstract：:Dose-response models are intensively used in herbicide bioassays. Despite recent advancements in the development of new herbicides, statistical analyses are commonly based on asymptotic approximations that are sometimes poor. This paper presents the use of recent results in higher order asymptotics for likelihood-base...

journal_title：Biometrics

authors： Bellio R,Jensen JE,Seiden P

更新日期：2000-12-01 00:00:00

abstract：:This paper discusses interval estimation of the risk ratio (RR) between a secondary infection, given a primary infection, and the primary infection. Three asymptotic closed-form interval estimators are developed using Wald's test statistic, the logarithmic transformation, and Fieller's theorem. The performance of thes...

journal_title：Biometrics

authors： Lui KJ

更新日期：1998-06-01 00:00:00

abstract：:Because the number of patients waiting for organ transplants exceeds the number of organs available, a better understanding of how transplantation affects the distribution of residual lifetime is needed to improve organ allocation. However, there has been little work to assess the survival benefit of transplantation f...

journal_title：Biometrics

authors： Vock DM,Tsiatis AA,Davidian M,Laber EB,Tsuang WM,Finlen Copeland CA,Palmer SM

更新日期：2013-12-01 00:00:00

abstract：:For patients with chronic myelogenous leukemia (CML), the effect of elevated blood levels of adenosine deaminase (ADA) is studied as a marker for transitions from stable disease to blast crisis and then to death. Data in the form of snapshots over time, with day, state of disease, and ADA level, are analyzed for 55 pa...

journal_title：Biometrics

authors： Klein JP,Klotz JH,Grever MR

更新日期：1984-12-01 00:00:00

abstract：:An adjusted rank correlation test is proposed as a technique for identifying publication bias in a meta-analysis, and its operating characteristics are evaluated via simulations. The test statistic is a direct statistical analogue of the popular "funnel-graph." The number of component studies in the meta-analysis, the...

journal_title：Biometrics

authors： Begg CB,Mazumdar M

更新日期：1994-12-01 00:00:00

abstract：:In a study designed to assess the relationship between a dichotomous exposure and the eventual occurrence of a dichotomous outcome, frequency matching has been proposed as a way to balance the exposure cohorts with respect to the sampling distribution of potential confounding factors. This paper discusses the pooled e...

journal_title：Biometrics

authors： Weinberg CR

更新日期：1985-03-01 00:00:00

abstract：:I discuss diagnostic methods for discriminant analysis. The equivalence with linear regression is noted and regression diagnostics are considered. The leverage is a function of the linear discriminant function and the Mahalanobis distance of the observation from the group mean. The distribution of this distance is app...

journal_title：Biometrics

authors： Lachenbruch PA

更新日期：1997-12-01 00:00:00

abstract：:In epidemiologic studies, subjects are often misclassified as to their level of exposure. Ignoring this misclassification error in the analysis introduces bias in the estimates of certain parameters and invalidates many hypothesis tests. For situations in which there is misclassification of exposure in a follow-up stu...

journal_title：Biometrics

authors： Reade-Christopher SJ,Kupper LL

更新日期：1991-06-01 00:00:00

abstract：:We study publication bias in meta-analysis by supposing there is a population (y, sigma) of studies which give treatment effect estimates y approximately N(theta, sigma(2)). A selection function describes the probability that each study is selected for review. The overall estimate of theta depends on the studies selec...

journal_title：Biometrics

authors： Henmi M,Copas JB,Eguchi S

更新日期：2007-06-01 00:00:00

abstract：:A life table estimates probabilities of surviving and of dying as well as death rates, as these would apply in a stationary population with the same underlying continuous mortality curve as the observed population. We have derived approximations to the probability of surviving that require no iteration, do not depend ...

journal_title：Biometrics

authors： Keyfitz N,Frauenthal J

更新日期：1975-12-01 00:00:00

abstract：:Quantitative traits analyzed in Genome-Wide Association Studies (GWAS) are often nonnormally distributed. For such traits, association tests based on standard linear regression are subject to reduced power and inflated type I error in finite samples. Applying the rank-based inverse normal transformation (INT) to nonno...

journal_title：Biometrics

authors： McCaw ZR,Lane JM,Saxena R,Redline S,Lin X

更新日期：2020-12-01 00:00:00

abstract：:Conventional statistical determinations of sample size in phase II studies typically lead to sample sizes of the order of 25 (Schoenfeld, 1980, International Journal of Radiation Oncology, Biology and Physics 6, 371-374). When the development of new treatments is proceeding rapidly relative to the recruitment of suita...

journal_title：Biometrics

authors： Whitehead J

更新日期：1985-06-01 00:00:00

abstract：:Brain connectivity analysis is now at the foreground of neuroscience research. A connectivity network is characterized by a graph, where nodes represent neural elements such as neurons and brain regions, and links represent statistical dependence that is often encoded in terms of partial correlation. Such a graph is i...

journal_title：Biometrics

authors： Xia Y,Li L

更新日期：2017-09-01 00:00:00

abstract：:We consider the problem of comparing two outcome measures when the pairs are clustered. Using the general principle of within-cluster resampling, we obtain a novel signed-rank test for clustered paired data. We show by a simple informative cluster size simulation model that only our test maintains the correct size und...

journal_title：Biometrics

authors： Datta S,Satten GA

更新日期：2008-06-01 00:00:00

abstract：:This article proposes an efficient approach to screening genes associated with a phenotypic variable of interest in genomic studies with subgroups. In order to capture and detect various association profiles across subgroups, we flexibly estimate the underlying effect size distribution across subgroups using a semi-pa...

journal_title：Biometrics

authors： Matsui S,Noma H,Qu P,Sakai Y,Matsui K,Heuck C,Crowley J

更新日期：2018-03-01 00:00:00