Interlaboratory diagnostic accuracy of a Salmonella specific PCR-based method.

Abstract:

:A collaborative study involving four European laboratories was conducted to investigate the diagnostic accuracy of a Salmonella specific PCR-based method, which was evaluated within the European FOOD-PCR project (http://www.pcr.dk). Each laboratory analysed by the PCR a set of independent obtained presumably naturally contaminated samples and compared the results with the microbiological culture method. The PCR-based method comprised a preenrichment step in buffered peptone water followed by a thermal cell lysis using a closed tube resin-based method. Artificially contaminated minced beef and whole broiler carcass-rinse resulted in a detection limit of less than 5 cells per 25 g meat or 100 ml broiler rinse. A total of 435 samples from four countries, including pig carcass swabs (n = 285), whole broiler carcass-rinse (n = 25), various raw meat (n = 33), and environmental samples (n = 92) were investigated. The interlaboratory diagnostic accuracy, i.e. diagnostic specificity and sensitivity, was shown to be 97.5%. The co-amplification of an internal amplification control indicated possible inhibitory substances derived from the sample. This work can contribute to the quality assurance of PCR-based diagnostic methods and is currently proposed as international standard document.

journal_name

Int J Food Microbiol

authors

Malorny B,Hoorfar J,Hugas M,Heuvelink A,Fach P,Ellerbroek L,Bunge C,Dorn C,Helmuth R

doi

10.1016/s0168-1605(03)00154-5

subject

Has Abstract

pub_date

2003-12-31 00:00:00

pages

241-9

issue

2-3

eissn

0168-1605

issn

1879-3460

pii

S0168160503001545

journal_volume

89

pub_type

杂志文章
  • Fluorescence assessment of Lactococcus lactis viability.

    abstract::The reproduction and activity of lactic acid bacteria (LAB) are essential in their applications in the dairy industry and other fermentations. Traditionally used methods like plate counting and acidification tests require long incubation times and provide limited information. Fluorescence techniques provide possibilit...

    journal_title:International journal of food microbiology

    pub_type: 杂志文章,评审

    doi:10.1016/s0168-1605(00)00170-7

    authors: Bunthof CJ,van den Braak S,Breeuwer P,Rombouts FM,Abee T

    更新日期:2000-04-10 00:00:00

  • Effect of enterococcin A 2000 on biological and synthetic phospholipid membranes.

    abstract::Lactic acid bacterium isolated from Bulgarian cheese and identified as Enterococcus faecium produces a small hydrophobic peptide substance (enterococcin A 2000) with broad spectrum of antimicrobial activity. The wide range of enterococcin antibacterial activity of this compound against Gram-positive, as well as agains...

    journal_title:International journal of food microbiology

    pub_type: 杂志文章

    doi:10.1016/s0168-1605(02)00143-5

    authors: Pantev A,Valcheva R,Danova S,Ivanova I,Minkov I,Haertlé T,Chobert JM

    更新日期:2003-01-25 00:00:00

  • Introducing a novel interaction model structure for the combined effect of temperature and pH on the microbial growth rate.

    abstract::Efficient modelling of the microbial growth rate can be performed by combining the effects of individual conditions in a multiplicative way, known as the gamma concept. However, several studies have illustrated that interactions between different effects should be taken into account at stressing environmental conditio...

    journal_title:International journal of food microbiology

    pub_type: 杂志文章

    doi:10.1016/j.ijfoodmicro.2016.06.011

    authors: Akkermans S,Noriega Fernandez E,Logist F,Van Impe JF

    更新日期:2017-01-02 00:00:00

  • Modelling the effect of temperature and water activity of Aspergillus flavus isolates from corn.

    abstract::The aim of this study was to model the effects of temperature (10-40 °C) and a(w) (0.80-0.98), in two media (Czapek yeast agar: CYA; corn extract medium: CEM) on the growth rates and growth boundaries (growth-no growth interface) of three strains of A. flavus isolated from corn in Argentina. Both kinetic and probabili...

    journal_title:International journal of food microbiology

    pub_type: 杂志文章

    doi:10.1016/j.ijfoodmicro.2012.03.002

    authors: Astoreca A,Vaamonde G,Dalcero A,Ramos AJ,Marín S

    更新日期:2012-05-01 00:00:00

  • Impact of microbial count distributions on human health risk estimates.

    abstract::Quantitative microbiological risk assessment (QMRA) is influenced by the choice of the probability distribution used to describe pathogen concentrations, as this may eventually have a large effect on the distribution of doses at exposure. When fitting a probability distribution to microbial enumeration data, several f...

    journal_title:International journal of food microbiology

    pub_type: 杂志文章

    doi:10.1016/j.ijfoodmicro.2014.11.024

    authors: Duarte AS,Nauta MJ

    更新日期:2015-02-16 00:00:00

  • Deoxynivalenol in barley samples from Uruguay.

    abstract::A survey of the natural occurrence of deoxynivalenol (DON) in barley harvested in Uruguay from 1996 to 2002 was conducted. A total of 292 samples were analyzed for DON by an immunochemical method using inmunoaffinity columns and fluorimetric detection. Between 26 and 100% of the samples were positive for DON while mea...

    journal_title:International journal of food microbiology

    pub_type: 杂志文章

    doi:10.1016/j.ijfoodmicro.2006.08.006

    authors: Pan D,Bonsignore F,Rivas F,Perera G,Bettucci L

    更新日期:2007-03-10 00:00:00

  • Discrimination of infectious and heat-treated norovirus by combining platinum compounds and real-time RT-PCR.

    abstract::Human noroviruses (NoV) are major agents of foodborne outbreaks. Because of the lack of a standardized cell culture method, real-time reverse transcriptase PCR is now commonly used for the detection of NoV in foodstuffs and environmental samples. However, this approach detects the viral nucleic acids of both infectiou...

    journal_title:International journal of food microbiology

    pub_type: 杂志文章

    doi:10.1016/j.ijfoodmicro.2018.01.015

    authors: Fraisse A,Niveau F,Hennechart-Collette C,Coudray-Meunier C,Martin-Latil S,Perelle S

    更新日期:2018-03-23 00:00:00

  • Occurrence of Alicyclobacillus in the fruit processing environment--a review.

    abstract::Concentrated fruit products have a significant place in modern consumption markets and are valuable semi-prepared food components to the bakery, dairy, confectionary, canning, baby food, frozen food, distilling and beverage industries. There is continuous pressure on the beverage industry to improve the quality of con...

    journal_title:International journal of food microbiology

    pub_type: 杂志文章,评审

    doi:10.1016/j.ijfoodmicro.2011.03.004

    authors: Steyn CE,Cameron M,Witthuhn RC

    更新日期:2011-05-14 00:00:00

  • Detection of hepatitis E virus (rabbit genotype) in farmed rabbits entering the food chain.

    abstract::Hepatitis E virus (HEV) infects humans and many animal species. The rabbit HEV has been found in farmed, wild and pet rabbits as well as in human patients suggesting zoonotic transmission. Although the routes of human infection with rabbit strains are unclear a foodborne transmission is suggested especially when asymp...

    journal_title:International journal of food microbiology

    pub_type: 杂志文章

    doi:10.1016/j.ijfoodmicro.2020.108507

    authors: Bigoraj E,Kozyra I,Kwit E,Rzeżutka A

    更新日期:2020-04-16 00:00:00

  • Use of molecular tools to characterize Lactobacillus spp. isolated from Greek traditional fermented sausages.

    abstract::In this study, our purpose was to molecular characterize Lactobacillus strains isolated from naturally fermented sausages, produced in three different processing plants in continental Greece, in order to investigate the differences of strains coming from different producing areas. Three-hundred and thirty eight strain...

    journal_title:International journal of food microbiology

    pub_type: 杂志文章

    doi:10.1016/j.ijfoodmicro.2006.09.001

    authors: Rantsiou K,Drosinos EH,Gialitaki M,Metaxopoulos I,Comi G,Cocolin L

    更新日期:2006-12-01 00:00:00

  • Thin agar layer- versus most probable number-PCR to enumerate viable and stressed Escherichia coli O157:H7 and application in a traditional raw milk pasta filata cheese.

    abstract::A mid-log phase broth culture of Escherichia (E.) coli O157:H7 381 (final concentration 10(4) cfu/mL) was monitored by conventional liquid- and solid-based enumeration techniques combined with PCR while it was subjected to thermal stress in gradually more complex systems (i.e., Tryptone Soya Broth, pasteurized milk an...

    journal_title:International journal of food microbiology

    pub_type: 杂志文章

    doi:10.1016/j.ijfoodmicro.2012.07.013

    authors: Fusco V,Riccardi M,Quero GM

    更新日期:2012-09-17 00:00:00

  • Use of redox potential modification by gas improves microbial quality, color retention, and ascorbic acid stability of pasteurized orange juice.

    abstract::The aim of this paper was to study the effect of both redox potential (Eh) and pasteurization of orange juice on stability of color and ascorbic acid, and growth recovery of microorganisms during storage at 15 degrees C for 7 weeks. Three conditions of Eh, +360 mV (ungassed), +240 mV (gassed with N2), and -180 mV (gas...

    journal_title:International journal of food microbiology

    pub_type: 杂志文章

    doi:10.1016/s0168-1605(03)00125-9

    authors: Alwazeer D,Delbeau C,Divies C,Cachon R

    更新日期:2003-12-15 00:00:00

  • A metagenomic assessment of viral contamination on fresh parsley plants irrigated with fecally tainted river water.

    abstract::Microbial food-borne diseases are still frequently reported despite the implementation of microbial quality legislation to improve food safety. Among all the microbial agents, viruses are the most important causative agents of food-borne outbreaks. The development and application of a new generation of sequencing tech...

    journal_title:International journal of food microbiology

    pub_type: 杂志文章

    doi:10.1016/j.ijfoodmicro.2017.06.001

    authors: Fernandez-Cassi X,Timoneda N,Gonzales-Gustavson E,Abril JF,Bofill-Mas S,Girones R

    更新日期:2017-09-18 00:00:00

  • Effect of diluents on the enumeration of Vibrio vulnificus.

    abstract::Peptone (0.1%) solution containing 3% NaCl (PS) was a more suitable diluent than phosphate buffered saline (PBS) solution for the enumeration of Vibrio vulnificus in both broth cultures and oyster homogenates. PBS caused significant underestimation of the viable population of the species by plate counts on either sele...

    journal_title:International journal of food microbiology

    pub_type: 杂志文章

    doi:10.1016/0168-1605(96)00948-8

    authors: Azanza PV,Buckle KA,Fleet GH

    更新日期:1996-07-01 00:00:00

  • Formation of B-vitamins by bacteria during the soaking process of soybeans for tempe fermentation.

    abstract::The formation of B-vitamins (nicotinic acid and nicotinamide, thiamine, vitamin B6 and vitamin B12) during the soaking of soybeans by bacteria, isolated from tempe, was investigated. Among the isolates examined no vitamin B6 producer was found. After inoculation of the soaking soybeans with Citrobacter freundii, Klebs...

    journal_title:International journal of food microbiology

    pub_type: 杂志文章

    doi:10.1016/0168-1605(94)90004-3

    authors: Denter J,Bisping B

    更新日期:1994-04-01 00:00:00

  • Nucleic acid techniques in bacterial systematics and identification.

    abstract::Systematics and identification play central roles in any discipline of microbiology. The current prokaryotic taxonomic framework as proposed in Bergey's Manual of Systematic Bacteriology is mainly based on small subunit rRNA data. Alternative markers representing the conserved core of the prokaryotic genomes roughly s...

    journal_title:International journal of food microbiology

    pub_type: 杂志文章,评审

    doi:10.1016/j.ijfoodmicro.2007.06.023

    authors: Ludwig W

    更新日期:2007-12-15 00:00:00

  • Oenological prefermentation practices strongly impact yeast population dynamics and alcoholic fermentation kinetics in Chardonnay grape must.

    abstract::Yeast species of Hanseniaspora and Candida genus are predominant during the early stages of winemaking, while species of Metschnikowia, Pichia, Zygoascus, Issatchenkia, Torulaspora and other genera are present at lower population levels. The impact of common oenological practices on yeast dynamics during the prefermen...

    journal_title:International journal of food microbiology

    pub_type: 杂志文章

    doi:10.1016/j.ijfoodmicro.2014.03.009

    authors: Albertin W,Miot-Sertier C,Bely M,Marullo P,Coulon J,Moine V,Colonna-Ceccaldi B,Masneuf-Pomarede I

    更新日期:2014-05-16 00:00:00

  • Biological control of postharvest spoilage caused by Penicillium expansum and Botrytis cinerea in apple by using the bacterium Rahnella aquatilis.

    abstract::The epiphytic bacterium Rahnella aquatilis, isolated from fruit and leaves of apples, was tested for antagonistic properties against Penicillium expansum and Botrytis cinerea on Red Delicious apple fruit. In "in vitro" assays, this bacterium inhibited completely the germination of P. expansum and B. cinerea spores, bu...

    journal_title:International journal of food microbiology

    pub_type: 杂志文章

    doi:10.1016/j.ijfoodmicro.2006.07.003

    authors: Calvo J,Calvente V,de Orellano ME,Benuzzi D,Sanz de Tosetti MI

    更新日期:2007-02-15 00:00:00

  • Inhibitory effect of sour pomegranate sauces on some green vegetables and kisir.

    abstract::In this study, the antimicrobial effects of both traditional and commercial pomegranate sour sauce samples on some green vegetables and also on "kısır" which is a popular and traditional appetizer in Turkey were investigated. The inhibitory effect of the pomegranate products on the naturally existing bacterial microfl...

    journal_title:International journal of food microbiology

    pub_type: 杂志文章

    doi:10.1016/j.ijfoodmicro.2012.02.006

    authors: Karabiyikli S,Kisla D

    更新日期:2012-04-16 00:00:00

  • Shelf life of reduced pork back-fat content sausages as affected by antimicrobial compounds and modified atmosphere packaging.

    abstract::The combined use of antimicrobial compounds and modified atmosphere packaging (MAP) on shelf life of reduced pork back-fat content sausages was investigated in this study. First, a pre-screening of different antimicrobial compounds and MAP was addressed. In particular, the consumer test was used as a tool to select th...

    journal_title:International journal of food microbiology

    pub_type: 杂志文章,评审

    doi:10.1016/j.ijfoodmicro.2011.07.009

    authors: Mastromatteo M,Incoronato AL,Conte A,Del Nobile MA

    更新日期:2011-10-17 00:00:00

  • A cardinal model to describe the effect of water activity on the growth of moulds.

    abstract::A simple model was proposed to describe the effect of water activity (Aw) on the radial growth rate of moulds. This model is deduced from the cardinal model family proposed by Rosso in 1995, which is only defined from cardinal values of environmental factors (minimum, optimum and maximum values), the growth rate obser...

    journal_title:International journal of food microbiology

    pub_type: 杂志文章

    doi:10.1016/s0168-1605(00)00469-4

    authors: Rosso L,Robinson TP

    更新日期:2001-02-15 00:00:00

  • Resistance of Staphylococcus aureus to UV-C light and combined UV-heat treatments at mild temperatures.

    abstract::In this investigation, the resistance of enterotoxigenic Staphylococcus aureus to short-wave ultraviolet light (UV-C) and to combined UV C-heat (UV-H) treatments in buffers and in liquid foods with different physicochemical characteristics was studied. Microbial resistance to UV-C varied slightly among the S. aureus s...

    journal_title:International journal of food microbiology

    pub_type: 杂志文章

    doi:10.1016/j.ijfoodmicro.2013.12.003

    authors: Gayán E,García-Gonzalo D,Alvarez I,Condón S

    更新日期:2014-02-17 00:00:00

  • Characterization of monascidin A from Monascus as citrinin.

    abstract::Following our investigations on red pigments and monascidin co-production by Monascus species, the antibiotic called monascidin A was characterized as citrinin. Evidence was given by qualitative methods, mass spectra and NMR. Citrinin, a nephrotoxic agent was produced both by Monascus purpureus and Monascus ruber, eit...

    journal_title:International journal of food microbiology

    pub_type: 杂志文章

    doi:10.1016/0168-1605(94)00167-5

    authors: Blanc PJ,Laussac JP,Le Bars J,Le Bars P,Loret MO,Pareilleux A,Prome D,Prome JC,Santerre AL,Goma G

    更新日期:1995-10-01 00:00:00

  • From farm to fork follow-up of thermotolerant campylobacters throughout the broiler production chain and in human cases in a Hungarian county during a ten-months period.

    abstract::A study tracking thermotolerant campylobacters from the setting of the broilers throughout the whole rearing period, slaughter and sale of chicken products in five consecutive broiler rotations of the same henhouse as well as in two different other farms was conducted in a well-defined geographic area (Hajdú-Bihar cou...

    journal_title:International journal of food microbiology

    pub_type: 杂志文章

    doi:10.1016/j.ijfoodmicro.2011.07.011

    authors: Damjanova I,Jakab M,Farkas T,Mészáros J,Galántai Z,Turcsányi I,Bistyák A,Juhász A,Pászti J,Kiss I,Kardos G

    更新日期:2011-11-01 00:00:00

  • Spoilage of blood sausages morcilla de Burgos treated with high hydrostatic pressure.

    abstract::In this study, the microbial ecology of the blood sausage morcilla de Burgos, subjected to high hydrostatic pressure treatment (HPP), was studied by culture-dependent and -independent methods. Morcilla de Burgos is the most traditional and famous blood sausage in Spain. The producers are interested in extending its sh...

    journal_title:International journal of food microbiology

    pub_type: 杂志文章

    doi:10.1016/j.ijfoodmicro.2008.02.017

    authors: Diez AM,Urso R,Rantsiou K,Jaime I,Rovira J,Cocolin L

    更新日期:2008-04-30 00:00:00

  • Grapefruit juice and its furocoumarins inhibits autoinducer signaling and biofilm formation in bacteria.

    abstract::Cell-to-cell communications in bacteria mediated by small diffusible molecules termed as autoinducers (AI) are known to influence gene expression and pathogenicity. Oligopeptides and N-acylhomoserine lactones (AHL) are major AI molecules involved in intra-specific communication in gram-positive and gram-negative bacte...

    journal_title:International journal of food microbiology

    pub_type: 杂志文章

    doi:10.1016/j.ijfoodmicro.2008.03.028

    authors: Girennavar B,Cepeda ML,Soni KA,Vikram A,Jesudhasan P,Jayaprakasha GK,Pillai SD,Patil BS

    更新日期:2008-07-15 00:00:00

  • Microbiology of processed edible insect products - Results of a preliminary survey.

    abstract::Little is known of the microbiology of processed insect products. The present survey analysed a total of n=38 samples of deep-fried and spiced (Acheta domesticus, Locusta migratoria, and Omphisa fuscidentalis), cooked in soy sauce ("tsukudani"; Oxya yezoensis, Vespula flaviceps, and Bombyx mori), dried (A. domesticus,...

    journal_title:International journal of food microbiology

    pub_type: 杂志文章

    doi:10.1016/j.ijfoodmicro.2016.11.005

    authors: Grabowski NT,Klein G

    更新日期:2017-02-21 00:00:00

  • Phenotypic and PCR-based characterization of the microflora in Norvegia cheese during ripening.

    abstract::Microbiological sampling of Norvegia cheese from three cheese factories was done during ripening. The evolution of aerobic mesophilic bacteria, lactococci, lactobacilli, enterococci, presumptive leuconostoc and pediococci was investigated after 30, 90, 180 and 270 days of ripening. Isolates (135) of non-starter lactic...

    journal_title:International journal of food microbiology

    pub_type: 杂志文章

    doi:10.1016/j.ijfoodmicro.2004.01.012

    authors: Østlie HM,Eliassen L,Florvaag A,Skeie S

    更新日期:2004-08-01 00:00:00

  • Mycotoxins produced by Fusarium proliferatum and F. pseudonygamai on maize, sorghum and pearl millet grains in vitro.

    abstract::Maize (Zea mays), sorghum (Sorghum bicolor) and pearl millet (Pennisetum glaucum) are basic staple foods for many rural or poorer communities. These crops are susceptible to plant diseases caused by multiple species of Fusarium, some of which also produce mycotoxins, including fumonisins and moniliformin that are detr...

    journal_title:International journal of food microbiology

    pub_type: 杂志文章

    doi:10.1016/j.ijfoodmicro.2019.02.016

    authors: Vismer HF,Shephard GS,van der Westhuizen L,Mngqawa P,Bushula-Njah V,Leslie JF

    更新日期:2019-05-02 00:00:00

  • Volatile compounds associated with Psychrobacter spp. and Pseudoalteromonas spp., the dominant microbiota of brown shrimp (Crangon crangon) during aerobic storage.

    abstract::The spoilage potential of several Psychrobacter and Pseudoalteromonas species (Psychrobacter cibarius, Psychrobacter maritimus, Pseudoalteromonas elyakovii, Pseudoalteromonas paragorgicola and Pseudoalteromonas nigrifaciens) was determined and quantified based on the presence of volatile organic compounds (VOCs). Psyc...

    journal_title:International journal of food microbiology

    pub_type: 杂志文章

    doi:10.1016/j.ijfoodmicro.2013.08.013

    authors: Broekaert K,Noseda B,Heyndrickx M,Vlaemynck G,Devlieghere F

    更新日期:2013-09-16 00:00:00