Molecular epidemiology of O139 Vibrio cholerae: mutation, lateral gene transfer, and founder flush.

Abstract:

:Vibrio cholerae in O-group 139 was first isolated in 1992 and by 1993 had been found throughout the Indian subcontinent. This epidemic expansion probably resulted from a single source after a lateral gene transfer (LGT) event that changed the serotype of an epidemic V. cholerae O1 El Tor strain to O139. However, some studies found substantial genetic diversity, perhaps caused by multiple origins. To further explore the relatedness of O139 strains, we analyzed nine sequenced loci from 96 isolates from patients at the Infectious Diseases Hospital, Calcutta, from 1992 to 2000. We found 64 novel alleles distributed among 51 sequence types. LGT events produced three times the number of nucleotide changes compared to mutation. In contrast to the traditional concept of epidemic spread of a homogeneous clone, the establishment of variant alleles generated by LGT during the rapid expansion of a clonal bacterial population may be a paradigm in infections and epidemics.

journal_name

Emerg Infect Dis

authors

Garg P,Aydanian A,Smith D,J Glenn M Jr,Nair GB,Stine OC

doi

10.3201/eid0907.030038

subject

Has Abstract

pub_date

2003-07-01 00:00:00

pages

810-4

issue

7

eissn

1080-6040

issn

1080-6059

journal_volume

9

pub_type

杂志文章
  • Household-level spatiotemporal patterns of incidence of cholera, Haiti, 2011.

    abstract::A cholera outbreak began in Haiti during October, 2010. Spatiotemporal patterns of household-level cholera in Ouest Department showed that the initial clusters tended to follow major roadways; subsequent clusters occurred further inland. Our data highlight transmission pathway complexities and the need for case and ho...

    journal_title:Emerging infectious diseases

    pub_type: 历史文章,杂志文章

    doi:10.3201/eid2009.131882

    authors: Blackburn JK,Diamond U,Kracalik IT,Widmer J,Brown W,Morrissey BD,Alexander KA,Curtis AJ,Ali A,Morris JG Jr

    更新日期:2014-09-01 00:00:00

  • Pandemic (H1N1) 2009 risk for frontline health care workers.

    abstract::To determine whether frontline health care workers (HCWs) are at greater risk for contracting pandemic (H1N1) 2009 than nonclinical staff, we conducted a study of 231 HCWs and 215 controls. Overall, 79 (17.7%) of 446 had a positive antibody titer by hemagglutination inhibition, with 46 (19.9%) of 231 HCWs and 33 (15.3...

    journal_title:Emerging infectious diseases

    pub_type: 杂志文章

    doi:10.3201/eid/1706.101030

    authors: Marshall C,Kelso A,McBryde E,Barr IG,Eisen DP,Sasadeusz J,Buising K,Cheng AC,Johnson P,Richards M

    更新日期:2011-06-01 00:00:00

  • Changing Demographics and Prevalence of Body Lice among Homeless Persons, Marseille, France.

    abstract::The prevalence of body lice among 2,288 sheltered homeless persons in the city of Marseille during 2000-2017 was 12.2% and significantly decreased over time. We report a positive association between body lice infestations and older age, duration of stays in France for migrants, frequent consumption of alcohol, and tob...

    journal_title:Emerging infectious diseases

    pub_type: 杂志文章

    doi:10.3201/eid2311.170516

    authors: Ly TDA,Touré Y,Calloix C,Badiaga S,Raoult D,Tissot-Dupont H,Brouqui P,Gautret P

    更新日期:2017-11-01 00:00:00

  • High prevalence of tuberculosis in previously treated patients, Cape Town, South Africa.

    abstract::The tuberculosis (TB) notification rate is high and increasing in 2 communities in Cape Town, South Africa. In 2002, we conducted a prevalence survey among adults > or = 15 years of age to determine the TB prevalence rate; 15% of households in these communities were randomly sampled. All persons living in sampled hous...

    journal_title:Emerging infectious diseases

    pub_type: 杂志文章

    doi:10.3201/eid1308.051327

    authors: den Boon S,van Lill SW,Borgdorff MW,Enarson DA,Verver S,Bateman ED,Irusen E,Lombard CJ,White NW,de Villiers C,Beyers N

    更新日期:2007-08-01 00:00:00

  • Whole-Genome Analysis of Recurrent Staphylococcus aureus t571/ST398 Infection in Farmer, Iowa, USA.

    abstract::Staphylococcus aureus strain sequence type (ST) 398 has emerged during the last decade, largely among persons who have contact with swine or other livestock. Although colonization with ST398 is common in livestock workers, infections are not frequently documented. We report recurrent ST398-IIa infection in an Iowa far...

    journal_title:Emerging infectious diseases

    pub_type: 信件

    doi:10.3201/eid2401.161184

    authors: Wardyn SE,Stegger M,Price LB,Smith TC

    更新日期:2018-01-01 00:00:00

  • Diagnostic methods for and clinical pictures of polyomavirus primary infections in children, Finland.

    abstract::We used comprehensive serodiagnostic methods (IgM, IgG, and IgG avidity) and PCR to study Merkel cell polyomavirus and trichodysplasia spinulosa-associated polyomavirus infections in children observed from infancy to adolescence. Comparing seroconversion intervals with previous and subsequent intervals, we found that ...

    journal_title:Emerging infectious diseases

    pub_type: 杂志文章

    doi:10.3201/eid2004.131015

    authors: Chen T,Tanner L,Simell V,Hedman L,Mäkinen M,Sadeghi M,Veijola R,Hyöty H,Ilonen J,Knip M,Toppari J,Simell O,Söderlund-Venermo M,Hedman K

    更新日期:2014-04-01 00:00:00

  • Emerging issues in virus taxonomy.

    abstract::Viruses occupy a unique position in biology. Although they possess some of the properties of living systems such as having a genome, they are actually nonliving infectious entities and should not be considered microorganisms. A clear distinction should be drawn between the terms virus, virion, and virus species. Speci...

    journal_title:Emerging infectious diseases

    pub_type: 杂志文章,评审

    doi:10.3201/eid1001.030279

    authors: van Regenmortel MH,Mahy BW

    更新日期:2004-01-01 00:00:00

  • Sporadic cryptosporidiosis, North Cumbria, England, 1996-2000.

    abstract::Risk factors for sporadic cryptosporidiosis were determined in 152 patients and 466 unmatched controls who resided in two local government districts in North Cumbria, North West England, from March 1, 1996, to February 29, 2000. Risk was associated with the usual daily volume of cold unboiled tap water drunk (odds rat...

    journal_title:Emerging infectious diseases

    pub_type: 杂志文章

    doi:10.3201/10.3201/eid1006.030325

    authors: Goh S,Reacher M,Casemore DP,Verlander NQ,Chalmers R,Knowles M,Williams J,Osborn K,Richards S

    更新日期:2004-06-01 00:00:00

  • Freshwater aquaculture nurseries and infection of fish with zoonotic trematodes, Vietnam.

    abstract::Residents of the Red River Delta region of northern Vietnam have a long tradition of eating raw fish. Fish-borne zoonotic trematodes (FZTs) are estimated to infect ≈1 million persons in Vietnam. It remains uncertain at what stages in the aquaculture production cycle fish become infected with FZTs. Newly hatched fish (...

    journal_title:Emerging infectious diseases

    pub_type: 杂志文章

    doi:10.3201/eid1612.100422

    authors: Phan VT,Ersbøll AK,Nguyen TT,Nguyen KV,Nguyen HT,Murrell D,Dalsgaard A

    更新日期:2010-12-01 00:00:00

  • Bartonella quintana in body lice and head lice from homeless persons, San Francisco, California, USA.

    abstract::Bartonella quintana is a bacterium that causes trench fever in humans. Past reports have shown Bartonella spp. infections in homeless populations in San Francisco, California, USA. The California Department of Public Health in collaboration with San Francisco Project Homeless Connect initiated a program in 2007 to col...

    journal_title:Emerging infectious diseases

    pub_type: 杂志文章

    doi:10.3201/eid1506.090054

    authors: Bonilla DL,Kabeya H,Henn J,Kramer VL,Kosoy MY

    更新日期:2009-06-01 00:00:00

  • Francisella tularensis in rodents, China.

    abstract::A total of 420 rodents in China were examined for Francisella tularensis by polymerase chain reaction. The infection rates were 4.76% in total, and 11.65%, 10.00%, 6.56%, 1.77%, and 0% in Jilin, Xinjiang, Heilongjiang, Inner Mongolia, and Zhejiang, respectively. Sequence analysis showed that all the detected agents be...

    journal_title:Emerging infectious diseases

    pub_type: 杂志文章

    doi:10.3201/eid1206.051324

    authors: Zhang F,Liu W,Chu MC,He J,Duan Q,Wu XM,Zhang PH,Zhao QM,Yang H,Xin ZT,Cao WC

    更新日期:2006-06-01 00:00:00

  • The 1918-19 influenza pandemic in Boyacá, Colombia.

    abstract::To quantify age-specific excess-mortality rates and transmissibility patterns for the 1918-20 influenza pandemic in Boyacá, Colombia, we reviewed archival mortality records. We identified a severe pandemic wave during October 1918-January1919 associated with 40 excess deaths per 10,000 population. The age profile for ...

    journal_title:Emerging infectious diseases

    pub_type: 历史文章,杂志文章

    doi:10.3201/eid1801.101969

    authors: Chowell G,Viboud C,Simonsen L,Miller MA,Acuna-Soto R,Díaz JM,Martínez-Martín AF

    更新日期:2012-01-01 00:00:00

  • Passive antibody administration (immediate immunity) as a specific defense against biological weapons.

    abstract::The potential threat of biological warfare with a specific agent is proportional to the susceptibility of the population to that agent. Preventing disease after exposure to a biological agent is partially a function of the immunity of the exposed individual. The only available countermeasure that can provide immediate...

    journal_title:Emerging infectious diseases

    pub_type: 杂志文章,评审

    doi:10.3201/eid0808.010516

    authors: Casadevall A

    更新日期:2002-08-01 00:00:00

  • Progress in Vaccine-Preventable and Respiratory Infectious Diseases-First 10 Years of the CDC National Center for Immunization and Respiratory Diseases, 2006-2015.

    abstract::The need for closer linkages between scientific and programmatic areas focused on addressing vaccine-preventable and acute respiratory infections led to establishment of the National Center for Immunization and Respiratory Diseases (NCIRD) at the Centers for Disease Control and Prevention. During its first 10 years (2...

    journal_title:Emerging infectious diseases

    pub_type: 历史文章,杂志文章

    doi:10.3201/eid2407.171699

    authors: Schuchat A,Anderson LJ,Rodewald LE,Cox NJ,Hajjeh R,Pallansch MA,Messonnier NE,Jernigan DB,Wharton M

    更新日期:2018-07-01 00:00:00

  • Rapid emergence of ciprofloxacin-resistant enterobacteriaceae containing multiple gentamicin resistance-associated integrons in a Dutch hospital.

    abstract::In a hematology unit in the Netherlands, the incidence of ciprofloxacin-resistant Enterobacter cloacae and Escherichia coli increased from from 1996 to 1999. Clonal spread of single genotypes of both ciprofloxacin-resistant E. coli and Enterobacter cloacae from patient to patient was documented by pulsed-field gel ele...

    journal_title:Emerging infectious diseases

    pub_type: 杂志文章

    doi:10.3201/eid0705.017515

    authors: van Belkum A,Goessens W,van der Schee C,Lemmens-den Toom N,Vos MC,Cornelissen J,Lugtenburg E,de Marie S,Verbrugh H,Löwenberg B,Endtz H

    更新日期:2001-09-01 00:00:00

  • Risk factors for hantavirus infection in Germany, 2005.

    abstract::In 2005, a marked increase in hantavirus infections was observed in Germany. Large cities and areas where hantaviruses were not known to be endemic were affected. A case-control study identified the following independent risk factors for infection: occupational exposure for construction workers, living <100 meter from...

    journal_title:Emerging infectious diseases

    pub_type: 杂志文章

    doi:10.3201/eid1309.070552

    authors: Abu Sin M,Stark K,van Treeck U,Dieckmann H,Uphoff H,Hautmann W,Bornhofen B,Jensen E,Pfaff G,Koch J

    更新日期:2007-09-01 00:00:00

  • Human challenge pilot study with Cyclospora cayetanensis.

    abstract::We describe a pilot study that attempted to infect human volunteers with Cyclospora cayetanensis. Seven healthy volunteers ingested an inoculum of Cyclospora oocysts (approximately 200-49,000 oocysts). The volunteers did not experience symptoms of gastroenteritis, and no oocysts were detected in any stool samples duri...

    journal_title:Emerging infectious diseases

    pub_type: 杂志文章

    doi:10.3201/eid1004.030356

    authors: Alfano-Sobsey EM,Eberhard ML,Seed JR,Weber DJ,Won KY,Nace EK,Moe CL

    更新日期:2004-04-01 00:00:00

  • Zoonotic Mycobacterium bovis-induced tuberculosis in humans.

    abstract::We aimed to estimate the global occurrence of zoonotic tuberculosis (TB) caused by Mycobacterium bovis or M. caprae infections in humans by performing a multilingual, systematic review and analysis of relevant scientific literature of the last 2 decades. Although information from many parts of the world was not availa...

    journal_title:Emerging infectious diseases

    pub_type: 杂志文章,meta分析,评审

    doi:10.3201/eid1906.120543

    authors: Müller B,Dürr S,Alonso S,Hattendorf J,Laisse CJ,Parsons SD,van Helden PD,Zinsstag J

    更新日期:2013-06-01 00:00:00

  • Nontuberculous Mycobacteria, Botswana, 2011-2014.

    abstract::We documented a 6-fold increase in the frequency of nontuberculous mycobacteria isolated from clinical samples in Botswana during 2011-2014. Because antituberculosis treatment is often initiated only on the basis of acid-fast bacilli smear-positive microscopy results, some patients with nontuberculous mycobacterial in...

    journal_title:Emerging infectious diseases

    pub_type: 历史文章,杂志文章

    doi:10.3201/eid2507.181440

    authors: Mbeha B,Mine M,Motswaledi MS,Dewar J

    更新日期:2019-07-01 00:00:00

  • Secondary and tertiary transmission of vaccinia virus from US military service member.

    abstract::During February and March 2010, the New York State Department of Health investigated secondary and tertiary vaccinia contact transmission from a military vaccinee to 4 close contacts. Identification of these cases underscores the need for strict adherence to postvaccination infection control guidance to avoid transmis...

    journal_title:Emerging infectious diseases

    pub_type: 杂志文章

    doi:10.3201/eid1704.101316

    authors: Young GE,Hidalgo CM,Sullivan-Frohm A,Schult C,Davis S,Kelly-Cirino C,Egan C,Wilkins K,Emerson GL,Noyes K,Blog D

    更新日期:2011-04-01 00:00:00

  • Evaluation of the benefits and risks of introducing Ebola community care centers, Sierra Leone.

    abstract::In some parts of western Africa, Ebola treatment centers (ETCs) have reached capacity. Unless capacity is rapidly scaled up, the chance to avoid a generalized Ebola epidemic will soon diminish. The World Health Organization and partners are considering additional Ebola patient care options, including community care ce...

    journal_title:Emerging infectious diseases

    pub_type: 杂志文章

    doi:10.3201/eid2103.141892

    authors: Kucharski AJ,Camacho A,Checchi F,Waldman R,Grais RF,Cabrol JC,Briand S,Baguelin M,Flasche S,Funk S,Edmunds WJ

    更新日期:2015-03-01 00:00:00

  • Kala-azar epidemiology and control, southern Sudan.

    abstract::Southern Sudan is one of the areas in eastern Africa most affected by visceral leishmaniasis (kala-azar), but lack of security and funds has hampered control. Since 2005, the return of stability has opened up new opportunities to expand existing interventions and introduce new ones. ...

    journal_title:Emerging infectious diseases

    pub_type: 杂志文章

    doi:10.3201/eid1404.071099

    authors: Kolaczinski JH,Hope A,Ruiz JA,Rumunu J,Richer M,Seaman J

    更新日期:2008-04-01 00:00:00

  • Identification of a Novel α-herpesvirus Associated with Ulcerative Stomatitis in Donkeys.

    abstract::An outbreak of ulcerative stomatitis was observed in a donkey (Equus asinus) dairy herd. Similar lesions were also observed on the dams' udders and, sporadically, in genital areas. The lesions typically resolved in 1-3 weeks. An α-herpesvirus, Varicellovirus, genetically related to equid herpesvirus type 3, was identi...

    journal_title:Emerging infectious diseases

    pub_type: 杂志文章

    doi:10.3201/eid2612.200201

    authors: Martella V,Lanave G,Camero M,Larocca V,Lorusso E,Catella C,Capozza P,Tempesta M,Buonavoglia C

    更新日期:2020-12-01 00:00:00

  • Cyclosporiasis outbreak, Indonesia.

    abstract::We describe an outbreak of Cyclospora cayetanensis infection among Dutch participants at a scientific meeting in September 2001 in Bogor, Indonesia. Fifty percent of the investigated participants were positive for C. cayetanensis. To our knowledge, this outbreak is the first caused by C. cayetanensis among susceptible...

    journal_title:Emerging infectious diseases

    pub_type: 杂志文章

    doi:10.3201/eid1109.040947

    authors: Blans MC,Ridwan BU,Verweij JJ,Rozenberg-Arska M,Verhoef J

    更新日期:2005-09-01 00:00:00

  • Respiratory Syncytial Virus Seasonality, Beijing, China, 2007-2015.

    abstract::During July 2007-June 2015, we enrolled 4,225 hospitalized children with pneumonia in a study to determine the seasonality of respiratory syncytial virus (RSV) infection in Beijing, China. We defined season as the period during which >10% of total PCRs performed each week were RSV positive. We identified 8 distinctive...

    journal_title:Emerging infectious diseases

    pub_type: 历史文章,杂志文章

    doi:10.3201/eid2506.180532

    authors: Yu J,Liu C,Xiao Y,Xiang Z,Zhou H,Chen L,Shen K,Xie Z,Ren L,Wang J

    更新日期:2019-06-01 00:00:00

  • Third Wave of Influenza A(H7N9) Virus from Poultry, Guangdong Province, China, 2014-2015.

    abstract::Fourteen influenza A(H7N9) viruses were isolated from poultry or the environment in live poultry markets in Guangdong Province, China during 2014-2015. Phylogenetic analysis showed that all viruses were descended from viruses of the second wave of influenza A(H7N9) virus infections during 2013. These viruses can be di...

    journal_title:Emerging infectious diseases

    pub_type: 杂志文章

    doi:10.3201/eid2109.150635

    authors: Xie S,Jia W,Lin Y,Xing K,Ren X,Qi W,Liao M

    更新日期:2015-09-01 00:00:00

  • Clostridium difficile in retail meat products, USA, 2007.

    abstract::To determine the presence of Clostridium difficile, we sampled cooked and uncooked meat products sold in Tucson, Arizona. Forty-two percent contained toxigenic C. difficile strains (either ribotype 078/toxinotype V [73%] or 027/toxinotype III [NAP1 or NAP1-related; 27%]). These findings indicate that food products may...

    journal_title:Emerging infectious diseases

    pub_type: 杂志文章

    doi:10.3201/eid1505.081071

    authors: Songer JG,Trinh HT,Killgore GE,Thompson AD,McDonald LC,Limbago BM

    更新日期:2009-05-01 00:00:00

  • Possible zoonotic transmission of hepatitis E from pet pig to its owner.

    abstract::Hepatitis E is transmitted mainly by water or food, but in industrialized countries, all routes of transmission have not been identified. We describe possible zoonotic transmission of hepatitis E virus that involved direct contact between a pet pig and its owner. ...

    journal_title:Emerging infectious diseases

    pub_type: 杂志文章

    doi:10.3201/eid1307.070063

    authors: Renou C,Cadranel JF,Bourlière M,Halfon P,Ouzan D,Rifflet H,Carenco P,Harafa A,Bertrand JJ,Boutrouille A,Muller P,Igual JP,Decoppet A,Eloit M,Pavio N

    更新日期:2007-07-01 00:00:00

  • Flea-borne Bartonella grahamii and Bartonella taylorii in bank voles.

    abstract::Bartonella species are increasingly associated with a range of human and animal diseases. Despite this, we have a poor understanding of the ecology and epidemiology of many species, especially those circulating in wild populations. Previous studies have demonstrated that a diverse range of Bartonella species are abund...

    journal_title:Emerging infectious diseases

    pub_type: 杂志文章

    doi:10.3201/eid1004.030455

    authors: Bown KJ,Bennet M,Begon M

    更新日期:2004-04-01 00:00:00

  • Human rabies and rabies in vampire and nonvampire bat species, Southeastern Peru, 2007.

    abstract::After a human rabies outbreak in southeastern Peru, we collected bats to estimate the prevalence of rabies in various species. Among 165 bats from 6 genera and 10 species, 10.3% were antibody positive; antibody prevalence was similar in vampire and nonvampire bats. Thus, nonvampire bats may also be a source for human ...

    journal_title:Emerging infectious diseases

    pub_type: 杂志文章

    doi:10.3201/eid1508.081522

    authors: Salmón-Mulanovich G,Vásquez A,Albújar C,Guevara C,Laguna-Torres VA,Salazar M,Zamalloa H,Cáceres M,Gómez-Benavides J,Pacheco V,Contreras C,Kochel T,Niezgoda M,Jackson FR,Velasco-Villa A,Rupprecht C,Montgomery JM

    更新日期:2009-08-01 00:00:00