Genetic structure and gene flow in a metapopulation of an endangered plant species, Silene tatarica.

Abstract:

:We investigated the distribution of genetic variation within and between seven subpopulations in a riparian population of Silene tatarica in northern Finland by using amplified fragment length polymorphism (AFLP) markers. A Bayesian approach-based clustering program indicated that the marker data contained not only one panmictic population, but consisted of seven clusters, and that each original sample site seems to consist of a distinct subpopulation. A coalescent-based simulation approach shows recurrent gene flow between subpopulations. Relative high FST values indicated a clear subpopulation differentiation. However, amova analysis and UPGMA-dendrogram did not suggest any hierarchical regional structuring among the subpopulations. There was no correlation between geographical and genetic distances among the subpopulations, nor any correlation between the subpopulation census size and amount of genetic variation. Estimates of gene flow suggested a low level of gene flow between the subpopulations, and the assignment tests proposed a few long-distance bidirectional dispersal events between the subpopulations. No apparent difference was found in within-subpopulation genetic diversity among upper, middle and lower regions along the river. Relative high amounts of linkage disequilibrium at subpopulation level indicated recent population bottlenecks or admixture, and at metapopulation levels a high subpopulation turnover rate. The overall pattern of genetic variation within and between subpopulations also suggested a 'classical' metapopulation structure of the species suggested by the ecological surveys.

journal_name

Mol Ecol

journal_title

Molecular ecology

authors

Tero N,Aspi J,Siikamäki P,Jäkäläniemi A,Tuomi J

doi

10.1046/j.1365-294x.2003.01898.x

subject

Has Abstract

pub_date

2003-08-01 00:00:00

pages

2073-85

issue

8

eissn

0962-1083

issn

1365-294X

pii

1898

journal_volume

12

pub_type

杂志文章
  • Transcriptional variation associated with cactus host plant adaptation in Drosophila mettleri populations.

    abstract::Although the importance of host plant chemistry in plant-insect interactions is widely accepted, the genetic basis of adaptation to host plants is not well understood. Here, we investigate transcriptional changes associated with a host plant shift in Drosophila mettleri. While D. mettleri is distributed mainly through...

    journal_title:Molecular ecology

    pub_type: 杂志文章

    doi:10.1111/mec.13388

    authors: Hoang K,Matzkin LM,Bono JM

    更新日期:2015-10-01 00:00:00

  • Long-term natal site-fidelity by immature lemon sharks (Negaprion brevirostris) at a subtropical island.

    abstract::Although many sharks begin their life confined in nursery habitats, it is unknown how rapidly they disperse away from their natal area once they leave the nursery. We examine this issue in immature lemon sharks (Negaprion brevirostris) from the time they leave the nursery (approximately age 3) at a subtropical island ...

    journal_title:Molecular ecology

    pub_type: 杂志文章

    doi:10.1111/j.1365-294X.2009.04289.x

    authors: Chapman DD,Babcock EA,Gruber SH,Dibattista JD,Franks BR,Kessel SA,Guttridge T,Pikitch EK,Feldheim KA

    更新日期:2009-08-01 00:00:00

  • Demographic analyses of marine and terrestrial snakes (Elapidae) using whole genome sequences.

    abstract::The question of whether spatial aspects of evolution differ in marine versus terrestrial realms has endured since Ernst Mayr's 1954 essay on marine speciation. Marine systems are often suggested to support larger and more highly connected populations, but quantitative comparisons with terrestrial systems have been lac...

    journal_title:Molecular ecology

    pub_type: 杂志文章

    doi:10.1111/mec.15726

    authors: Ludington AJ,Sanders KL

    更新日期:2020-11-10 00:00:00

  • Genetic diversity in water frog hybrids (Pelophylax esculentus) varies with population structure and geographic location.

    abstract::Pelophylax esculentus is a hybridogenetic frog originating from matings between P. ridibundus (RR) and P. lessonae (LL). Typically, diploid hybrids (LR) live in sympatry with one of their parental species, upon which they depend for successful reproduction. In parts of their range, however, pure hybrid populations can...

    journal_title:Molecular ecology

    pub_type: 杂志文章

    doi:10.1111/j.1365-294X.2010.04603.x

    authors: Arioli M,Jakob C,Reyer HU

    更新日期:2010-05-01 00:00:00

  • The genetics of adaptation to novel environments: selection on germination timing in Arabidopsis thaliana.

    abstract::When studying selection during adaptation to novel environments, researchers have often paid little attention to an organism's earliest developmental stages. Despite this lack of attention, early life history traits may be under strong selection during colonization, as the expression of adaptive phenotypes at later po...

    journal_title:Molecular ecology

    pub_type: 杂志文章

    doi:10.1111/j.1365-294X.2010.04558.x

    authors: Moyers BT,Kane NC

    更新日期:2010-04-01 00:00:00

  • Phylogenetic species delimitation in ectomycorrhizal fungi and implications for barcoding: the case of the Tricholoma scalpturatum complex (Basidiomycota).

    abstract::Population studies have revealed that the fungal ectomycorrhizal morphospecies Tricholoma scalpturatum consists of at least two genetically distinct groups that occur sympatrically in several geographical areas. This discovery prompted us to examine species boundaries and relationships between members formerly assigne...

    journal_title:Molecular ecology

    pub_type: 杂志文章

    doi:10.1111/j.1365-294X.2010.04863.x

    authors: Jargeat P,Martos F,Carriconde F,Gryta H,Moreau PA,Gardes M

    更新日期:2010-12-01 00:00:00

  • Prey choice by carabid beetles feeding on an earthworm community analysed using species- and lineage-specific PCR primers.

    abstract::The carabid beetle Pterostichus melanarius is a major natural enemy of pests, such as aphids and slugs in agricultural systems. Earthworms are a dominant non-pest component of the diet of P. melanarius which help sustain the beetles during periods when the pest population is low or absent. In this study we wanted to t...

    journal_title:Molecular ecology

    pub_type: 杂志文章

    doi:10.1111/j.1365-294X.2010.04602.x

    authors: King RA,Vaughan IP,Bell JR,Bohan DA,Symondson WO

    更新日期:2010-04-01 00:00:00

  • Phylogeography and mitochondrial DNA (mtDNA) diversity in North American collared lemmings (Dicrostonyx groenlandicus).

    abstract::Variation in the nucleotide sequence of the mitochondrial control region (250 bp) and the cytochrome b region (870 bp) was examined in collared lemmings (Dicrostonyx groenlandicus) from 19 localities in northern Alaska and the Canadian Arctic. The division of D. groenlandicus in two phylogeographical groups with limit...

    journal_title:Molecular ecology

    pub_type: 杂志文章

    doi:10.1046/j.1365-294x.2000.00853.x

    authors: Ehrich D,Fedorov VB,Stenseth NC,Krebs CJ,Kenney A

    更新日期:2000-03-01 00:00:00

  • Potential adaptive divergence between subspecies and populations of snapdragon plants inferred from QST -FST comparisons.

    abstract::Phenotypic divergence among natural populations can be explained by natural selection or by neutral processes such as drift. Many examples in the literature compare putatively neutral (FST ) and quantitative genetic (QST ) differentiation in multiple populations to assess their evolutionary signature and identify cand...

    journal_title:Molecular ecology

    pub_type: 杂志文章

    doi:10.1111/mec.15546

    authors: Marin S,Gibert A,Archambeau J,Bonhomme V,Lascoste M,Pujol B

    更新日期:2020-08-01 00:00:00

  • Multiple gene genealogies reveal asymmetrical hybridization and introgression among strongylocentrotid sea urchins.

    abstract::The evolution of incompatibilities between eggs and sperm is thought to play important roles in establishing and maintaining reproductive isolation among species of broadcast-spawning marine invertebrates. However, the effectiveness of gametic isolation in initiating the speciation process and/or in limiting the intro...

    journal_title:Molecular ecology

    pub_type: 杂志文章

    doi:10.1111/j.1365-294X.2009.04094.x

    authors: Addison JA,Pogson GH

    更新日期:2009-03-01 00:00:00

  • Genetic analysis of the mating system of the common brushtail possum (Trichosurus vulpecula) in New Zealand farmland.

    abstract::We examined male reproductive success in a common brushtail possum population in New Zealand farmland. Paternity was assigned to 66 of 91 pouch young (maternity known), using a likelihood approach applied to genotypes at six microsatellite loci having an overall average exclusion probability of around 99%. The distrib...

    journal_title:Molecular ecology

    pub_type: 杂志文章

    doi:10.1046/j.1365-294x.2000.00941.x

    authors: Taylor AC,Cowan PE,Fricke BL,Cooper DW

    更新日期:2000-07-01 00:00:00

  • Sex, drugs and recombination: the wild life of Aspergillus.

    abstract::Throughout the eukaryotes, sexual reproduction is an almost universal phenomenon. However, within the Kingdom Fungi, this relationship is not so clear-cut. Fungi exhibit a spectrum of reproductive modes and life-cycles; amongst the better known species, sexual reproduction is often facultative, can be rare, and in ove...

    journal_title:Molecular ecology

    pub_type: 评论,杂志文章

    doi:10.1111/j.1365-294X.2012.05506.x

    authors: Fisher MC,Henk DA

    更新日期:2012-03-01 00:00:00

  • Hybridization between pollination syndromes as an ecological and evolutionary resource.

    abstract::In plants, pollination syndromes (the correlated presence of many features of relevance to pollination mode, for instance pollination by a particular animal clade) are a striking feature of plant biodiversity, providing great floral phenotypic diversity (Fenster et al. ). Adaptation to a particular animal pollinator p...

    journal_title:Molecular ecology

    pub_type: 评论,新闻

    doi:10.1111/mec.13903

    authors: Cronk Q,Yang JY

    更新日期:2016-12-01 00:00:00

  • Taxonomic complexity and breeding system transitions: conservation genetics of the Epipactis leptochila complex (Orchidaceae).

    abstract::The genus Epipactis contains a problematical complex of autogamous taxa among which species limits are difficult to define. Different authors have treated these plants in different ways, some recognizing the different taxa as distinct species, others considering them as minor intraspecific variants. These contrasting ...

    journal_title:Molecular ecology

    pub_type: 杂志文章

    doi:10.1046/j.1365-294x.2002.01610.x

    authors: Squirrell J,Hollingsworth PM,Bateman RM,Tebbitt MC,Hollingsworth ML

    更新日期:2002-10-01 00:00:00

  • Genetic footprints of late Quaternary climate change in the diversity of Patagonian-Fueguian rodents.

    abstract::Species are impacted by climate change at both ecological and evolutionary time scales. Studies in northern continents have provided abundant evidence of dramatic shifts in distributions of species subsequent to the last glacial maximum (LGM), particularly at high latitudes. However, little is known about the history ...

    journal_title:Molecular ecology

    pub_type: 杂志文章

    doi:10.1111/j.1365-294X.2010.04734.x

    authors: Lessa EP,D'Elía G,Pardiñas UF

    更新日期:2010-08-01 00:00:00

  • Gene expression profiling reveals deep-sea coral response to the Deepwater Horizon oil spill.

    abstract::Deep-sea coral communities are key components of the Gulf of Mexico ecosystem and were adversely affected by the Deepwater Horizon (DWH) oil spill. Coral colonies exposed to oil and dispersant exhibited mortality, damage and physiological signatures of stress. Understanding how corals respond to oil and dispersant exp...

    journal_title:Molecular ecology

    pub_type: 杂志文章

    doi:10.1111/mec.14847

    authors: DeLeo DM,Herrera S,Lengyel SD,Quattrini AM,Kulathinal RJ,Cordes EE

    更新日期:2018-10-01 00:00:00

  • Phylogeographic differentiation in the mitochondrial control region in the koala, Phascolarctos cinereus (Goldfuss 1817).

    abstract::The koala, Phascolarctos cinereus, is a geographically widespread species endemic to Australia, with three currently recognized subspecies: P.c. adustus, P.c. cinereus, and P.c. victor. Intraspecific variation in the mitochondrial DNA (mtDNA) control region was examined in over 200 animals from 16 representative popul...

    journal_title:Molecular ecology

    pub_type: 杂志文章

    doi:10.1046/j.1365-294x.1999.00656.x

    authors: Houlden BA,Costello BH,Sharkey D,Fowler EV,Melzer A,Ellis W,Carrick F,Baverstock PR,Elphinstone MS

    更新日期:1999-06-01 00:00:00

  • How to use molecular marker data to measure evolutionary parameters in wild populations.

    abstract::Estimating the genetic basis of phenotypic traits and the selection pressures acting on them are central to our understanding of the evolution and conservation of wild populations. However, obtaining such evolutionary-related parameters is not an easy task as it requires accurate information on both relatedness among ...

    journal_title:Molecular ecology

    pub_type: 杂志文章,评审

    doi:10.1111/j.1365-294X.2005.02561.x

    authors: Garant D,Kruuk LE

    更新日期:2005-06-01 00:00:00

  • Intrinsic incompatibilities evolving as a by-product of divergent ecological selection: Considering them in empirical studies on divergence with gene flow.

    abstract::The possibility of intrinsic barriers to gene flow is often neglected in empirical research on local adaptation and speciation with gene flow, for example when interpreting patterns observed in genome scans. However, we draw attention to the fact that, even with gene flow, divergent ecological selection may generate i...

    journal_title:Molecular ecology

    pub_type: 杂志文章

    doi:10.1111/mec.14147

    authors: Kulmuni J,Westram AM

    更新日期:2017-06-01 00:00:00

  • Experimental test of genetic rescue in isolated populations of brook trout.

    abstract::Genetic rescue is an increasingly considered conservation measure to address genetic erosion associated with habitat loss and fragmentation. The resulting gene flow from facilitating migration may improve fitness and adaptive potential, but is not without risks (e.g., outbreeding depression). Here, we conducted a test...

    journal_title:Molecular ecology

    pub_type: 杂志文章

    doi:10.1111/mec.14225

    authors: Robinson ZL,Coombs JA,Hudy M,Nislow KH,Letcher BH,Whiteley AR

    更新日期:2017-09-01 00:00:00

  • Colony kin structure and host-parasite relatedness in the barnacle goose.

    abstract::Conspecific brood parasitism (CBP), females laying eggs in the nest of other 'host' females of the same species, is a common alternative reproductive tactic among birds. For hosts there are likely costs of incubating and rearing foreign offspring, but costs may be low in species with precocial chicks such as waterfowl...

    journal_title:Molecular ecology

    pub_type: 杂志文章

    doi:10.1111/j.1365-294X.2009.04397.x

    authors: Anderholm S,Waldeck P,VAN DER Jeugd HP,Marshall RC,Larsson K,Andersson M

    更新日期:2009-12-01 00:00:00

  • Symbiont strain is the main determinant of variation in Wolbachia-mediated protection against viruses across Drosophila species.

    abstract::Wolbachia is a common heritable bacterial symbiont in insects. Its evolutionary success lies in the diverse phenotypic effects it has on its hosts coupled to its propensity to move between host species over evolutionary timescales. In a survey of natural host-symbiont associations in a range of Drosophila species, we ...

    journal_title:Molecular ecology

    pub_type: 杂志文章

    doi:10.1111/mec.14164

    authors: Martinez J,Tolosana I,Ok S,Smith S,Snoeck K,Day JP,Jiggins FM

    更新日期:2017-08-01 00:00:00

  • Using probability modelling and genetic parentage assignment to test the role of local mate availability in mating system variation.

    abstract::The formal testing of mating system theories with empirical data is important for evaluating the relative importance of different processes in shaping mating systems in wild populations. Here, we present a generally applicable probability modelling framework to test the role of local mate availability in determining a...

    journal_title:Molecular ecology

    pub_type: 杂志文章

    doi:10.1111/j.1365-294X.2011.05252.x

    authors: Blyton MD,Banks SC,Peakall R,Lindenmayer DB

    更新日期:2012-02-01 00:00:00

  • Effects of soil preservation for biodiversity monitoring using environmental DNA.

    abstract::Environmental DNA (eDNA) metabarcoding is becoming a key tool for biodiversity monitoring over large geographical or taxonomic scales and for elusive taxa such as soil organisms. Increasing sample sizes and interest in remote or extreme areas often require the preservation of soil samples and thus deviations from opti...

    journal_title:Molecular ecology

    pub_type: 杂志文章

    doi:10.1111/mec.15674

    authors: Guerrieri A,Bonin A,Münkemüller T,Gielly L,Thuiller W,Francesco Ficetola G

    更新日期:2020-10-08 00:00:00

  • Sex-specific genetic structure in Schistosoma mansoni: evolutionary and epidemiological implications.

    abstract::We studied the population genetic structure of 360 and 1247 adult Schistosoma mansoni using seven microsatellite and seven random amplified polymorphic DNA (RAPD) markers, respectively. Parasites were collected from their natural definitive host Rattus rattus in Guadeloupe (West Indies). We found a sex-specific geneti...

    journal_title:Molecular ecology

    pub_type: 杂志文章

    doi:10.1046/j.1365-294x.2002.01518.x

    authors: Prugnolle F,De Meeûs T,Durand P,Sire C,Théron A

    更新日期:2002-07-01 00:00:00

  • Reticulate evolutionary history and extensive introgression in mosquito species revealed by phylogenetic network analysis.

    abstract::The role of hybridization and subsequent introgression has been demonstrated in an increasing number of species. Recently, Fontaine et al. (Science, 347, 2015, 1258524) conducted a phylogenomic analysis of six members of the Anopheles gambiae species complex. Their analysis revealed a reticulate evolutionary history a...

    journal_title:Molecular ecology

    pub_type: 杂志文章

    doi:10.1111/mec.13544

    authors: Wen D,Yu Y,Hahn MW,Nakhleh L

    更新日期:2016-06-01 00:00:00

  • Comparative phylogeography of the Veronica alpina complex in Europe and North America.

    abstract::The Veronica alpina complex comprises eight species of alpine habitats over a wide range of mountain systems in the Northern Hemisphere. The occurrence of sympatric species in the European and North American mountain systems allowed us not only to investigate the effect of the ice ages on intraspecific phylogeographic...

    journal_title:Molecular ecology

    pub_type: 杂志文章

    doi:10.1111/j.1365-294X.2006.02980.x

    authors: Albach DC,Schönswetter P,Tribsch A

    更新日期:2006-10-01 00:00:00

  • Magadi tilapia ecological specialization: filling the early gap in the speciation continuum.

    abstract::Cichlid fish are well known for their high speciation rates, which are usually accompanied by spectacular and rapid diversification in eco-morphological and secondary sexual traits. This is best illustrated by the famous repeated explosive radiations in the African Great Lakes Tanganyika, Malawi and Victoria, each lak...

    journal_title:Molecular ecology

    pub_type: 评论,杂志文章

    doi:10.1111/mec.13598

    authors: Pinho C,Faria R

    更新日期:2016-04-01 00:00:00

  • Genetic consequences of introducing allopatric lineages of Bluestriped Snapper (Lutjanus kasmira) to Hawaii.

    abstract::A half century ago the State of Hawaii began a remarkable, if unintentional, experiment on the population genetics of introduced species, by releasing 2431 Bluestriped Snappers (Lutjanus kasmira) from the Marquesas Islands in 1958 and 728 conspecifics from the Society Islands in 1961. By 1992 L. kasmira had spread acr...

    journal_title:Molecular ecology

    pub_type: 杂志文章

    doi:10.1111/j.1365-294X.2010.04535.x

    authors: Gaither MR,Bowen BW,Toonen RJ,Planes S,Messmer V,Earle J,Ross Robertson D

    更新日期:2010-03-01 00:00:00

  • Genetic structuring of Patagonian toothfish populations in the Southwest Atlantic Ocean: the effect of the Antarctic Polar Front and deep-water troughs as barriers to genetic exchange.

    abstract::The environmental and/or life history factors affecting genetic exchange in marine species with potential for high dispersal are of great interest, not only from an evolutionary standpoint but also with regard to effective management. Previous genetic studies have demonstrated substantial differentiation among populat...

    journal_title:Molecular ecology

    pub_type: 杂志文章

    doi:10.1111/j.1365-294X.2004.02327.x

    authors: Shaw PW,Arkhipkin AI,Al-Khairulla H

    更新日期:2004-11-01 00:00:00