Rapid identification of allergen-encoding cDNA clones by phage display and high-density arrays.

Abstract:

:We describe a high-throughput, quantitative technology for fast identification of all different clones present in selectively enriched phage surface-displayed cDNA libraries. The strategy is based on a combination of phage display and high-density arrays. To demonstrate the utility of the method cDNAs of Aspergillus fumigatus cloned into phagemid pJuFo were expressed on the tip of filamentous M13 phage and affinity-selected on solid phase-immobilized serum IgE from allergic patients. Enriched phagemid libraries were amplified in bacteria, plated and arrayed into 384-well microtitre plates by robotic colony picking. cDNA inserts were amplified by high-throughput PCR and gridded onto high-density filter membranes. Filters were iteratively probed with randomly-sequenced inserts until all clones were identified. Eighty-one different sequences encoding IgE-binding proteins likely to cover a large part of the allergen repertoire of the mould were found. This approach represents a widely applicable method for rapid high-throughput identification of all individual cDNAs present in selectively enriched libraries.

authors

Kodzius R,Rhyner C,Konthur Z,Buczek D,Lehrach H,Walter G,Crameri R

doi

10.2174/1386207033329751

subject

Has Abstract

pub_date

2003-03-01 00:00:00

pages

147-54

issue

2

eissn

1386-2073

issn

1875-5402

journal_volume

6

pub_type

杂志文章
  • Scutellaria barbata flavonoids improve the composited Aβ-induced abnormal changes of glial cells in rats' brain.

    abstract:AIM:It has been reported that glial cells are involved in Alzheimer's disease (AD). According to our previous research, Scutellaria barbata flavonoids (SBFs) can protect the neuronal disorder and memory impairment for AD-like rats, while the effect of SBFs on the glial cells disorder in AD-like rats has been less well ...

    journal_title:Combinatorial chemistry & high throughput screening

    pub_type: 杂志文章

    doi:10.2174/1386207323666201209092358

    authors: Cheng JJ,Guo Q,Wu XG,Ma S,Gao Y,Ya-Zhen S

    更新日期:2020-12-08 00:00:00

  • In Vitro Antifungal Screening of Argentine Native or Naturalized Plants against the Phytopathogen Monilinia fructicola.

    abstract:BACKGROUND:One of the main problems that fruit health has gone through in recent years is the difficult eradication of their fungal pathogens during crops or the post-harvest stage. This concerns the whole world because it represents huge production losses, fruit export restrictions and consumer distrust. Consequently,...

    journal_title:Combinatorial chemistry & high throughput screening

    pub_type: 杂志文章

    doi:10.2174/1386207324666210121113648

    authors: Stegmayer MI,Fernández LN,Álvarez NH,Seimandi GM,Reutemann AG,Derita MG

    更新日期:2021-01-20 00:00:00

  • Suzuki-Miyaura and Stille reactions as key steps in the synthesis of diversely functionalized Amaryllidaceae alkaloid analogs bearing a 5,6,7,8-tetrahydrobenzo[c,e]azocine skeleton.

    abstract::Microwave-assisted Suzuki-Miyaura and Stille cross-coupling reactions for the synthesis of highly electron-rich and diversely functionalized biaryl intermediates are presented. Microwave-irradiation has been demonstrated to be a very powerful tool for performing difficult transition metal-catalyzed cross-coupling reac...

    journal_title:Combinatorial chemistry & high throughput screening

    pub_type: 杂志文章

    doi:10.2174/138620707783018513

    authors: Appukkuttan P,Dehaen W,Van der Eycken E

    更新日期:2007-11-01 00:00:00

  • In silico identification of potential dynamin-related protein 1 antagonists: implications for diseases involving mitochondrial dysfunction.

    abstract::Mitochondria are the center of metabolism and the critical role of aberrant mitochondrial fission in the onset and progression of a wide range of human diseases such as neurodegenerative disorders, cardiovascular disease, ischemic stroke and diabetes, is slowly becoming recognized. Under physiological conditions, mito...

    journal_title:Combinatorial chemistry & high throughput screening

    pub_type: 杂志文章

    doi:10.2174/1386207311316010044

    authors: Hanumanthappa P,Rajanikant GK

    更新日期:2014-01-01 00:00:00

  • New Research for Quinazoline-2,4-diones as HPPD Inhibitors Based on 2D-MLR and 3D-QSAR Models.

    abstract:AIM AND OBJECTIVE:4-Hydroxyphenylpyruvate dioxygenase (HPPD), converting phydroxyphenylpyruvate (HPPA) to homogentisate (HGA), is an important target for treating type I tyrosinemia and synthesizing novel herbicides due to its significant role in tyrosine catabolism. Hence, it is imperative to design novel HPPD inhibit...

    journal_title:Combinatorial chemistry & high throughput screening

    pub_type: 杂志文章

    doi:10.2174/1386207320666170622073738

    authors: Fu Y,Sun YN,Cao HF,Yi KH,Zhao LX,Li JZ,Ye F

    更新日期:2017-01-01 00:00:00

  • Fluorescent Formazans and Tetrazolium Salts - Towards Fluorescent Cytotoxicity Assays.

    abstract::Formazan-based colorimetric cytotoxicity assays, such as the MTT assay, are typically used to assess cell viability with only metabolically active cells reducing tetrazolium salts into the formazans, which is then quantified by absorbance. Fluorescence offers several advantages compared to colorimetric assays and woul...

    journal_title:Combinatorial chemistry & high throughput screening

    pub_type: 杂志文章

    doi:10.2174/1386207319666160408150913

    authors: Ladyman MK,Walton JG,Lilienkampf A,Bradley M

    更新日期:2016-01-01 00:00:00

  • A novel machine learning method for cytokine-receptor interaction prediction.

    abstract::Most essential functions are associated with various protein-protein interactions, particularly the cytokine-receptor interaction. Knowledge of the heterogeneous network of cytokine- receptor interactions provides insights into various human physiological functions. However, only a few studies are focused on the compu...

    journal_title:Combinatorial chemistry & high throughput screening

    pub_type: 杂志文章

    doi:10.2174/1386207319666151110122621

    authors: Wei L,Zou Q,Liao M,Lu H,Zhao Y

    更新日期:2016-01-01 00:00:00

  • The Application of High-Throughput Technologies in Precision Diagnosis and Personalized Therapy (Pt III).

    abstract:: ...

    journal_title:Combinatorial chemistry & high throughput screening

    pub_type: 社论

    doi:10.2174/138620732204190724103437

    authors: Huang T

    更新日期:2019-01-01 00:00:00

  • Normalization of cDNA microarray data using wavelet regressions.

    abstract::Normalization is an essential step in microarray data mining and analysis. For cDNA microarray data, the primary purpose of normalization is removing the intensity-dependent bias across different slides within an experimental group or between multiple groups. The locally weighted regression (lowess) procedure has been...

    journal_title:Combinatorial chemistry & high throughput screening

    pub_type: 杂志文章

    doi:10.2174/1386207043328274

    authors: Wang J,Ma JZ,Li MD

    更新日期:2004-12-01 00:00:00

  • Computational Prediction of Protein Epsilon Lysine Acetylation Sites Based on a Feature Selection Method.

    abstract:AIM AND OBJECTIVE:Lysine acetylation, as one type of post-translational modifications (PTM), plays key roles in cellular regulations and can be involved in a variety of human diseases. However, it is often high-cost and time-consuming to use traditional experimental approaches to identify the lysine acetylation sites. ...

    journal_title:Combinatorial chemistry & high throughput screening

    pub_type: 杂志文章

    doi:10.2174/1386207320666170314093216

    authors: Gao J,Tao XW,Zhao J,Feng YM,Cai YD,Zhang N

    更新日期:2017-01-01 00:00:00

  • Constructing a Risk Prediction Model for Lung Cancer Recurrence by Using Gene Function Clustering and Machine Learning.

    abstract:OBJECTIVE:A significant proportion of patients with early non-small cell lung cancer (NSCLC) can be cured by surgery. The distant metastasis of tumors is the most common cause of treatment failure. Precisely predicting the likelihood that a patient develops distant metastatic risk will help identify patients who can fu...

    journal_title:Combinatorial chemistry & high throughput screening

    pub_type: 杂志文章

    doi:10.2174/1386207322666190129111749

    authors: Zhong J,Chen JM,Chen SL,Yi YF

    更新日期:2019-01-01 00:00:00

  • Exploration of the Potential Mechanism of Calculus Bovis in Treatment of Primary Liver Cancer by Network Pharmacology.

    abstract:AIM AND OBJECTIVE:Calculus Bovis (CB) has been employed to treat diseases for a long time. It has been identified to play significant anti-inflammatory and anti-tumor roles. However, the mechanism of treating primary liver cancer (PLC) remains to be revealed. This study aims to clarify the molecules and mechanisms of C...

    journal_title:Combinatorial chemistry & high throughput screening

    pub_type: 杂志文章

    doi:10.2174/1386207323666200808172051

    authors: Zhang Z,Zeng P,Gao W,Wu R,Deng T,Chen S,Tian X

    更新日期:2021-01-01 00:00:00

  • Moringa oleifera leaf extract attenuates Pb acetate-induced testicular damage in rats.

    abstract:BACKGROUND:Lead (Pb) remains a common contaminant in the environment in many parts of the world. Pb exposure adversely affects many human organs, including the gonads, via oxidant and inflammatory marker propagation in affected tissues. Moringa oleifera leaf extract (MOE) is a rich source of antioxidants reported to ha...

    journal_title:Combinatorial chemistry & high throughput screening

    pub_type: 杂志文章

    doi:10.2174/1386207323666200923142831

    authors: Albasher G,Alrajhi R,Alshammry E,Almeer R

    更新日期:2020-09-23 00:00:00

  • Ligand Based-Pharmacophore Modeling and Extended Bi oactivity Prediction for Salinosporamide A, B and C from Marine Actino mycetes Salinispora tropica.

    abstract:AIM AND OBJECTIVE:Actinomycetes produce structurally unique secondary metabolites with pharmaceutically essential bioactivities. Salinispora, an obligate marine actinomycete, produces structurally varied and unique secondary metabolites. There is plenty of scope for development of drugs from the novel compounds isolate...

    journal_title:Combinatorial chemistry & high throughput screening

    pub_type: 杂志文章

    doi:10.2174/1386207319666161215154128

    authors: Dineshkumar K,Vasudevan A,Hopper W

    更新日期:2017-01-01 00:00:00

  • Host-directed Therapy: A New Arsenal to Come.

    abstract::The emergence of drug-resistant strains among the variety of pathogens worsens the situation in today's scenario. In such a situation, a very heavy demand for developing the new antibiotics has arisen, but unfortunately, very limited success has been achieved in this arena till now. Infectious diseases usually make th...

    journal_title:Combinatorial chemistry & high throughput screening

    pub_type: 杂志文章

    doi:10.2174/1386207323999200728115857

    authors: Mohan M,Bhattacharya D

    更新日期:2021-01-01 00:00:00

  • Network Pharmacology and Reverse Molecular Docking-Based Prediction of the Molecular Targets and Pathways for Avicularin Against Cancer.

    abstract:AIM AND OBJECTIVE:Avicularin has been found to inhibit the proliferation of HepG-2 cells in vitro in the screening of our laboratory. We intended to explain the molecular mechanism of this effect. Therefore, the combined methods of reverse molecular docking and network pharmacology were used in order to illuminate the ...

    journal_title:Combinatorial chemistry & high throughput screening

    pub_type: 杂志文章

    doi:10.2174/1386207322666190206163409

    authors: Duan C,Li Y,Dong X,Xu W,Ma Y

    更新日期:2019-01-01 00:00:00

  • DABCO Catalyzed Green and Efficient Synthesis of 2-Amino-4H-Pyrans and Their Biological Evaluation as Antimicrobial and Anticancer Agents.

    abstract:AIM AND OBJECTIVE:The present method is simple, green and highly efficient for the synthesis of 2-amino-4H-pyran derivatives which are achieved by a one pot three component cyclocondensation of aldehyde, malanonitrile and ethyl acetoacetate or methyl acetoacetate using DABCO under solvent free with grinding conditions ...

    journal_title:Combinatorial chemistry & high throughput screening

    pub_type: 杂志文章

    doi:10.2174/1386207321666180315095422

    authors: Waghmare AS,Pandit SS,Suryawanshi DM

    更新日期:2018-01-01 00:00:00

  • Validation of an UPLC-DAD method for the quantification of phenolic acids, verbascoside and 6-epi-aububin in Crescentia cujete fruit.

    abstract:BACKGROUND:The fruit pulp decoction of Crescentia cujete, commonly known as calabash, is traditionally used for the treatment of several respiratory diseases and is available as syrup formulations. Unfortunately, there is no detailed investigation on analytical methods for warranting the quality of these products. AIM...

    journal_title:Combinatorial chemistry & high throughput screening

    pub_type: 杂志文章

    doi:10.2174/1386207323666201207114302

    authors: Rivera-Mondragón A,Caballero-George C,Pieters L,Foubert K

    更新日期:2020-12-06 00:00:00

  • Three-component green reaction of arylaldehydes, 6-amino-1,3- dimethyluracil and active methylene compounds catalyzed by Zr(HSO4)4 under solvent-free conditions.

    abstract::A convenient one-pot, three-component reaction of aromatic aldehydes, 6-amino-1,3-dimethyluracil and active methylene compounds in the presence of Zr(HSO4)4 as a heterogeneous catalyst, under solvent-free conditions brings a very simple and highly efficient method for the preparation of pyrimido[4,5-b]quinolines, pyri...

    journal_title:Combinatorial chemistry & high throughput screening

    pub_type: 杂志文章

    doi:

    authors: Abdolmohammadi S,Balalaie S,Barari M,Rominger F

    更新日期:2013-02-01 00:00:00

  • The Emory Chemical Biology Discovery Center: leveraging academic innovation to advance novel targets through HTS and beyond.

    abstract::The Emory Chemical Biology Discovery Center (ECBDC) aims to accelerate high throughput biology and translation of biomedical research discoveries into therapeutic targets and future medicines by providing high throughput research platforms to scientific collaborators worldwide. ECBDC research is focused at the interfa...

    journal_title:Combinatorial chemistry & high throughput screening

    pub_type: 杂志文章

    doi:10.2174/1386207317666140109125415

    authors: Johns MA,Meyerkord-Belton CL,Du Y,Fu H

    更新日期:2014-03-01 00:00:00

  • Local histogram analysis: detecting cell-microstructure interactions on combinatorial biomaterial libraries.

    abstract::Increasingly, combinatorial libraries are used to screen large numbers of complex chemically- and physically-patterned polymers against cell response. There is a strong need to extract meaningful relationships between cell function and material surface features from these experiments. A novel high-throughput cell-mate...

    journal_title:Combinatorial chemistry & high throughput screening

    pub_type: 杂志文章

    doi:10.2174/138620709788681880

    authors: Su J,Meredith JC

    更新日期:2009-07-01 00:00:00

  • Identification and functional study of cytokines and chemokines involved in tumorigenesis.

    abstract::Tumorigenesis may be affected by various cellular components in the tumor cells and/or by tumor microenvironmental factors. Cytokines, including chemokines (chemotactic cytokines) are polypeptides or small soluble proteins generated by leukocytes and non-leukocytes, including cancer cells and stromal cells, for exampl...

    journal_title:Combinatorial chemistry & high throughput screening

    pub_type: 杂志文章,评审

    doi:10.2174/138620712799218608

    authors: Zeng J,Xie K,Wu H,Zhang B,Huang C

    更新日期:2012-03-01 00:00:00

  • Rational principles of compound selection for combinatorial library design.

    abstract::It is practically impossible in a short period of time to synthesize and test all compounds in any large exhaustive chemical library. We discuss rational approaches to selecting representative subsets of virtual libraries that help direct experimental synthetic efforts for both targeted and diverse library design. For...

    journal_title:Combinatorial chemistry & high throughput screening

    pub_type: 杂志文章

    doi:10.2174/1386207024607400

    authors: Tropsha A,Zheng W

    更新日期:2002-03-01 00:00:00

  • The influence of diabetes mellitus on rotator cuff repair: A systematic review and meta-analysis.

    abstract:BACKGROUND:Clinical outcomes after rotator cuff repair associated with diabetes mellitus(DM) are generally favorable, but no study has attempted to establish the influence of DM on outcomes after rotator cuff repair. PURPOSE:To conduct a meta-analysis of clinical studies evaluating patient outcomes between people with...

    journal_title:Combinatorial chemistry & high throughput screening

    pub_type: meta分析

    doi:10.2174/1386207323666201020114034

    authors: Lu X,Sun H,Xu Y,Cao X

    更新日期:2020-10-20 00:00:00

  • Extraction, Identification and Biological Activities of Saponins in Sea Cucumber Pearsonothuria graeffei.

    abstract:AIMS AND OBJECTIVES:Secondary metabolism in marine organisms produces a diversity of biologically important natural compounds that are not present in terrestrial species. Sea cucumbers belong to the invertebrate Echinodermata and are famous for their nutraceutical, medical and food values. They are known for possession...

    journal_title:Combinatorial chemistry & high throughput screening

    pub_type: 杂志文章

    doi:10.2174/1386207321666180212165448

    authors: Khattab RA,Elbandy M,Lawrence A,Paget T,Rae-Rho J,Binnaser YS,Ali I

    更新日期:2018-01-01 00:00:00

  • Transcriptome Analysis of FEN1 Knockdown HEK293T Cell Strain Reveals Alteration in Nucleic Acid Metabolism, Virus Infection, Cell Morphogenesis and Cancer Development.

    abstract:AIM AND OBJECTIVE:Flap endonuclease-1 (FEN1) plays a central role in DNA replication and DNA damage repair process. In mammals, FEN1 functional sites variation is related to cancer and chronic inflammation, and supports the role of FEN1 as a tumor suppressor. However, FEN1 is overexpressed in multiple types of cancer c...

    journal_title:Combinatorial chemistry & high throughput screening

    pub_type: 杂志文章

    doi:10.2174/1386207322666190704095602

    authors: Liu SB,Qiu XQ,Guo WQ,Li JL,Su Q,Du JH,Hu HJ,Wang XX,Song YH,Lou X,Xu XB

    更新日期:2019-01-01 00:00:00

  • Protein Sequence Comparison and DNA-binding Protein Identification with Generalized PseAAC and Graphical Representation.

    abstract:AIM AND OBJECTIVE:The rapid increase in the amount of protein sequence data available leads to an urgent need for novel computational algorithms to analyze and compare these sequences. This study is undertaken to develop an efficient computational approach for timely encoding protein sequences and extracting the hidden...

    journal_title:Combinatorial chemistry & high throughput screening

    pub_type: 杂志文章

    doi:10.2174/1386207321666180130100838

    authors: Li C,Zhao J,Wang C,Yao Y

    更新日期:2018-01-01 00:00:00

  • A Pilot Study for Investigation of Plasma Amino Acid Profile in Neurofibromatosis Type 1 Patients.

    abstract:BACKGROUND:Neurofibromatosis, also known as Von Recklinghausen disease, is a systemic and progressive genetic disease that primarily affects the skin, eyes, nervous system and bones. The disease can occur in a variety of ways and can vary from individuals. Metabolomic-based research using blood samples has enabled new ...

    journal_title:Combinatorial chemistry & high throughput screening

    pub_type: 杂志文章

    doi:10.2174/1386207323666201204143206

    authors: Oz O,Koyuncu I,Gonel A

    更新日期:2020-12-04 00:00:00

  • A Convenient Method for the Synthesis of Chromeno[4,3-b]pyridines Via Three-component Reaction.

    abstract:AIM AND OBJECTIVE:The importance of Chromeno[4,3-b]pyridines in bioactive compounds, highlighted the ongoing research on developing novel methods for the construction of this heterocyclic scaffold. Regarding the advantageous features of multi-component reactions in organic synthesis, we will try to synthesize pyridocou...

    journal_title:Combinatorial chemistry & high throughput screening

    pub_type: 杂志文章

    doi:10.2174/1386207321666180524110635

    authors: Nikookar H,Moghimi S,Sayahi MH,Mahdavi M,Ranjbar PR,Firoozpour L,Foroumadi A

    更新日期:2018-01-01 00:00:00

  • Patent review.

    abstract::The section on patent review will be focused in the areas of interest to the readers of CCHTS. The search was conducted using the following key words: combinatorial chemistry, high throughput screening, drug repurposing, chemical library, high content screening, drug discovery and natural products. All patents highlig...

    journal_title:Combinatorial chemistry & high throughput screening

    pub_type: 杂志文章,评审

    doi:10.2174/138620711795222473

    authors: Roy A

    更新日期:2011-05-01 00:00:00