Phylogeny of the Neotropical Alibertia group (Rubiaceae), with emphasis on the genus Alibertia, inferred from ITS and 5S ribosomal DNA sequences.

Abstract:

:Phylogenetic relationships of 38 species of the Alibertia group (Rubiaceae) and two outgroup species were investigated using the nuclear ribosomal 5S nontranscribed spacer (5S-NTS) and the internal transcribed spacers (ITS). Analysis of the data sets separately and in combination resulted in several well-supported and congruent groupings. However, the three analyses yielded different results as to the branching order of the basal clades. With the exception of Alibertia hispida, the species in the genus Alibertia appear in one weakly to moderately supported clade. This clade is in turn composed of two strongly supported subclades. One comprises several Alibertia species, including the type (A. edulis), three Borojoa species, and Randia tessmannii. The other subclade consists of Alibertia species only. This division is also generally supported morphologically by fruit size, corolla size, number of corolla lobes, and pollen aperture (porate vs. colporate). The sister group to the Alibertia clade comprises Duroia with Amaioua species internested. The close relationship of Ibetralia and Kutchubaea is corroborated. In addition, Alibertia hispida is a member of this strongly supported clade. Likewise, the two "Genipa" species are supported as a monophyletic group in 100% of the bootstrap replicates. It is concluded that the 5S spacer is superior to the commonly used ITS region in terms of resolution and robustness among closely related taxa.

journal_name

Am J Bot

authors

Persson C

subject

Has Abstract

pub_date

2000-07-01 00:00:00

pages

1018-28

issue

7

eissn

0002-9122

issn

1537-2197

pii

87/7/1018

journal_volume

87

pub_type

杂志文章
  • Evolutionary divergence of leaf width and its correlates.

    abstract:UNLABELLED:• PREMISE OF THE STUDY:The question why leaf dimensions vary so much between species has long puzzled ecologists. Presumably, variation arises from selective forces acting on leaf function but which selective forces and which leaf functions? This investigation assesses the consistency of divergence in plant...

    journal_title:American journal of botany

    pub_type: 杂志文章

    doi:10.3732/ajb.1400379

    authors: Tozer WC,Rice B,Westoby M

    更新日期:2015-03-01 00:00:00

  • An overview of extant conifer evolution from the perspective of the fossil record.

    abstract:PREMISE OF THE STUDY:Conifers are an important living seed plant lineage with an extensive fossil record spanning more than 300 million years. The group therefore provides an excellent opportunity to explore congruence and conflict between dated molecular phylogenies and the fossil record. METHODS:We surveyed the curr...

    journal_title:American journal of botany

    pub_type: 杂志文章

    doi:10.1002/ajb2.1143

    authors: Leslie AB,Beaulieu J,Holman G,Campbell CS,Mei W,Raubeson LR,Mathews S

    更新日期:2018-09-01 00:00:00

  • Analysis of substage associations in prophase I of meiosis in floral buds of wild-type Arabidopsis thaliana (Brassicaceae).

    abstract::We developed an improved cytological protocol for producing high quality, light microscope images of plant meiotic chromosomes. Because the technique works on species with small genomes and thick microsporocyte cell walls, it should be useful for studying the wild relatives of Arabidopsis and other eudicots with small...

    journal_title:American journal of botany

    pub_type: 杂志文章

    doi:10.3732/ajb.94.12.2063

    authors: Stronghill PE,Hasenkampf CA

    更新日期:2007-12-01 00:00:00

  • Characterization of the stem anatomy of the Eocene fern Dennstaedtiopsis aerenchymata (Dennstaedtiaceae) by use of confocal laser scanning microscopy.

    abstract:PREMISE OF THE STUDY:Permineralization provides the most faithful known mode of three-dimensional preservation of the morphology and cellular anatomy of fossil plants. Standard optical microscopic documentation of such structures can provide only an approximation of their true three-dimensional form and is incapable of...

    journal_title:American journal of botany

    pub_type: 杂志文章

    doi:10.3732/ajb.1300027

    authors: Shi CS,Schopf JW,Kudryavtsev AB

    更新日期:2013-08-01 00:00:00

  • Microsatellite markers for the cushion rock jasmine, Androsace tapete (Primulaceae), a species endemic to the Qinghai-Tibetan Plateau.

    abstract:UNLABELLED: PREMISE OF THE STUDY:Microsatellite markers were developed in an alpine plant endemic to the Qinghai-Tibetan Plateau, Androsace tapete, to investigate its spatial genetic structure, gene flow, and mating patterns. • METHODS AND RESULTS:Using the combined biotin capture method, 16 microsatellite primer set...

    journal_title:American journal of botany

    pub_type: 杂志文章

    doi:10.3732/ajb.1000260

    authors: Zeng L,Li Z,Tashi T,Chen J,Zhong Y,Geng Y

    更新日期:2010-10-01 00:00:00

  • Germination responses to current and future temperatures of four seeder shrubs across a latitudinal gradient in western Iberia.

    abstract:PREMISE OF THE STUDY:Species differ in their temperature germination niche. Populations of a species may similarly differ across the distribution range of the species. Anticipating the impacts of climate variability and change requires understanding the differential sensitivity to germination temperature among and with...

    journal_title:American journal of botany

    pub_type: 杂志文章

    doi:10.3732/ajb.1600278

    authors: Chamorro D,Luna B,Moreno JM

    更新日期:2017-01-01 00:00:00

  • Tempo and mode of flower color evolution.

    abstract:UNLABELLED:• PREMISE OF THE STUDY:Flower color is one of the best-studied floral traits in terms of its genetic basis and ecological significance, yet few studies have examined the processes that shape its evolution across deep timescales. Advances in comparative methods along with larger phylogenies for floral radiat...

    journal_title:American journal of botany

    pub_type: 杂志文章

    doi:10.3732/ajb.1500163

    authors: Smith SD,Goldberg EE

    更新日期:2015-07-01 00:00:00

  • Calochortus gunnisonii furthers evidence for the complex genetic legacy of historical climate change in the southern Rocky Mountains.

    abstract:PREMISE OF THE STUDY:Climate cycles of the Quaternary have impacted plants at a global scale, leaving behind a complex genetic legacy. Species of the northern Rocky Mountains of North America were exposed to more uniform glacial patterns than the central and southern ranges, where synergistic relationships between temp...

    journal_title:American journal of botany

    pub_type: 杂志文章

    doi:10.1002/ajb2.1259

    authors: Fuller RS,McGlaughlin ME

    更新日期:2019-03-01 00:00:00

  • Shift from bird to butterfly pollination in Clivia (Amaryllidaceae).

    abstract:PREMISE OF THE STUDY:Pollinator shifts have been implicated as a driver of divergence in angiosperms. We tested the hypothesis that there was a transition from bird- to butterfly pollination in the African genus Clivia (Amaryllidaceae) and investigated how floral traits may have been either modified or retained during ...

    journal_title:American journal of botany

    pub_type: 杂志文章

    doi:10.3732/ajb.1300363

    authors: Kiepiel I,Johnson SD

    更新日期:2014-01-01 00:00:00

  • X-rays and virtual taphonomy resolve the first Cissus (Vitaceae) macrofossils from Africa as early-diverging members of the genus.

    abstract:PREMISE OF THE STUDY:Fossilized seeds similar to Cissus (Vitaceae) have been recognized from the Miocene of Kenya, though some were previously assigned to the Menispermaceae. We undertook a comparative survey of extant African Cissus seeds to identify the fossils and consider their implications for the evolution and bi...

    journal_title:American journal of botany

    pub_type: 杂志文章

    doi:10.3732/ajb.1600177

    authors: Adams NF,Collinson ME,Smith SY,Bamford MK,Forest F,Malakasi P,Marone F,Sykes D

    更新日期:2016-09-01 00:00:00

  • Heterozygote advantage in the American chestnut, Castanea dentata (Fagaceae).

    abstract::The American chestnut (Castanea dentata; Fagaceae) was a dominant canopy tree in the Appalachian Mountains of North America. Since the introduction of the chestnut blight fungus (Cryphonectria parasitica; Valsaceae) in America, the American chestnut has been reduced to a predominantly clonal, understory species. Our o...

    journal_title:American journal of botany

    pub_type: 杂志文章

    doi:10.3732/ajb.90.2.207

    authors: Stilwell KL,Wilbur HM,Werth CR,Taylor DR

    更新日期:2003-02-01 00:00:00

  • Mycorrhizal diversity in Apostasia (Orchidaceae) indicates the origin and evolution of orchid mycorrhiza.

    abstract::We demonstrated that "orchid mycorrhiza," a specialized mycorrhizal type, appeared in the common ancestor of the largest plant family Orchidaceae and that the fungal partner shifted from Glomeromycota to a particular clade of Basidiomycota in association with this character evolution. Several unique mycorrhizal charac...

    journal_title:American journal of botany

    pub_type: 杂志文章

    doi:10.3732/ajb.0900101

    authors: Yukawa T,Ogura-Tsujita Y,Shefferson RP,Yokoyama J

    更新日期:2009-11-01 00:00:00

  • Polyphenol oxidase activity in the roots of seedlings of Bromus (Poaceae) and other grass genera.

    abstract:UNLABELLED: PREMISE OF THE STUDY:Phenolic compounds exuded by roots have been implicated in allelopathic interactions among plants. Root enzymes that destroy phenolics may protect plants against allelopathic inhibition and thus may aid in invasiveness. Phenolic-degrading enzymes are chiefly found in aboveground plant ...

    journal_title:American journal of botany

    pub_type: 杂志文章

    doi:10.3732/ajb.0900337

    authors: Holzapfel C,Shahrokh P,Kafkewitz D

    更新日期:2010-07-01 00:00:00

  • Bryophyte diaspore bank: a genetic memory? Genetic structure and genetic diversity of surface populations and diaspore bank in the liverwort Mannia fragrans (Aytoniaceae).

    abstract::Propagule banks are assumed to be able to store considerable genetic variability. Bryophyte populations are expected to rely more heavily on stored propagules than those of seed plants due to the vulnerability of the haploid gametophyte. This reliance has important implications for the genetic structure and evolutiona...

    journal_title:American journal of botany

    pub_type: 杂志文章

    doi:10.3732/ajb.2007283

    authors: Hock Z,Szövényi P,Schneller JJ,Tóth Z,Urmi E

    更新日期:2008-05-01 00:00:00

  • A smaller Macadamia from a more vagile tribe: inference of phylogenetic relationships, divergence times, and diaspore evolution in Macadamia and relatives (tribe Macadamieae; Proteaceae).

    abstract::Tribe Macadamieae (91 spp., 16 genera; Proteaceae) is widespread across the southern hemisphere on all major fragments of Gondwana except New Zealand and India. Macadamia is cultivated outside its natural range as a "nut" crop (notably in Hawaii, where it is the principal orchard crop). We sampled seven DNA regions an...

    journal_title:American journal of botany

    pub_type: 杂志文章

    doi:10.3732/ajb.0700006

    authors: Mast AR,Willis CL,Jones EH,Downs KM,Weston PH

    更新日期:2008-07-01 00:00:00

  • Leaf architecture and direction of incident light influence mesophyll fluorescence profiles.

    abstract::Light propagation and distribution inside leaves have been recognized as important processes influencing photosynthesis. Monochromatic light absorption across the mesophyll was measured using chlorophyll fluorescence generated from illumination of the cut edge (epi-illumination), as well as the adaxial or abaxial surf...

    journal_title:American journal of botany

    pub_type: 杂志文章

    doi:10.3732/ajb.92.9.1425

    authors: Johnson DM,Smith WK,Vogelmann TC,Brodersen CR

    更新日期:2005-09-01 00:00:00

  • The African baobab (Adansonia digitata, Malvaceae): genetic resources in neglected populations of the Nuba Mountains, Sudan.

    abstract:UNLABELLED:• PREMISE OF THE STUDY:Adansonia digitata L. is one of the most important indigenous fruit trees of mainland Africa. Despite its significance for subsistence and income generation of local communities, little is known about the genetic and morphological variability of East African populations of A. digitata...

    journal_title:American journal of botany

    pub_type: 杂志文章

    doi:10.3732/ajb.1400198

    authors: Wiehle M,Prinz K,Kehlenbeck K,Goenster S,Mohamed SA,Finkeldey R,Buerkert A,Gebauer J

    更新日期:2014-09-01 00:00:00

  • Conservation genetics of an endemic and endangered epiphytic Laelia speciosa (Orchidaceae).

    abstract::We used isozymes (16 loci in 11 enzymatic systems) from Laelia speciosa, an endemic and endangered epiphytic orchid of Mexico, to assess the genetic diversity and population genetic structure in nine populations distributed along its geographic range, as well as to detect those populations that are genetically unique ...

    journal_title:American journal of botany

    pub_type: 杂志文章

    doi:10.3732/ajb.94.2.184

    authors: Avila-Díaz I,Oyama K

    更新日期:2007-02-01 00:00:00

  • AFLP markers as a tool to reconstruct complex relationships: A case study in Rosa (Rosaceae).

    abstract::The genus Rosa has a complex evolutionary history caused by several factors, often in conjunction: extensive hybridization, recent radiation, incomplete lineage sorting, and multiple events of polyploidy. We examined the applicability of AFLP markers for reconstructing (species) relationships in Rosa, using UPGMA clus...

    journal_title:American journal of botany

    pub_type: 杂志文章

    doi:10.3732/ajb.95.3.353

    authors: Koopman WJ,Wissemann V,De Cock K,Van Huylenbroeck J,De Riek J,Sabatino GJ,Visser D,Vosman B,Ritz CM,Maes B,Werlemark G,Nybom H,Debener T,Linde M,Smulders MJ

    更新日期:2008-03-01 00:00:00

  • Resilience to multiple stressors in an aquatic plant and its microbiome.

    abstract:PREMISE:Outcomes of species interactions, especially mutualisms, are notoriously dependent on environmental context, and environments are changing rapidly. Studies have investigated how mutualisms respond to or ameliorate anthropogenic environmental changes, but most have focused on nutrient pollution or climate change...

    journal_title:American journal of botany

    pub_type: 杂志文章

    doi:10.1002/ajb2.1404

    authors: O'Brien AM,Yu ZH,Luo DY,Laurich J,Passeport E,Frederickson ME

    更新日期:2020-02-01 00:00:00

  • Spatial genetic structure in four understory Psychotria species (Rubiaceae) and implications for tropical forest diversity.

    abstract::• Premise of the study: Tropical forests are the most species-rich terrestrial communities on Earth, and understory trees and shrubs comprise a large fraction of their plant species diversity, especially at high rainfalls. The mechanisms responsible for generating such high levels of diversity remain unknown. One hypo...

    journal_title:American journal of botany

    pub_type: 杂志文章

    doi:10.3732/ajb.1300460

    authors: Theim TJ,Shirk RY,Givnish TJ

    更新日期:2014-07-01 00:00:00

  • Origins and nature of vessels in monocotyledons: 8. Orchidaceae.

    abstract::Xylem of the orchids studied provided unusually favorable material to demonstrate how conductive tissue evolves in monocotyledons. In the end walls of tracheary elements of many Orchidaceae, remnants of pit membranes were observed with scanning electron microscopy and minimally destructive methods. The full range from...

    journal_title:American journal of botany

    pub_type: 杂志文章

    doi:10.3732/ajb.93.7.963

    authors: Carlquist S,Schneider EL

    更新日期:2006-07-01 00:00:00

  • Endosymbiosis and population differentiation in wild and cultivated Lolium perenne (Poaceae).

    abstract:PREMISE OF THE STUDY:Endophytic fungi are common inhabitants of cool-season grasses that can affect host growth and reproduction. One prerequisite for the expected coevolution between symbionts is that there exist variable effects of the endosymbiont on its host in different environments. Here, the impact of endophytes...

    journal_title:American journal of botany

    pub_type: 杂志文章

    doi:10.3732/ajb.1000226

    authors: Cheplick GP

    更新日期:2011-05-01 00:00:00

  • Indirect effects of herbivory on plant-pollinator interactions in invasive Lythrum salicaria.

    abstract:PREMISE OF THE STUDY:Herbivory can affect a plant's fitness in a variety of ways, including modifying the biotic interactions of the plant. In particular, when herbivory influences floral display, we hypothesize that pollinator visitation will be altered accordingly. Here we studied the indirect effects of feeding by t...

    journal_title:American journal of botany

    pub_type: 杂志文章

    doi:10.3732/ajb.1500043

    authors: Russell-Mercier JL,Sargent RD

    更新日期:2015-05-01 00:00:00

  • The age and diversification of terrestrial New World ecosystems through Cretaceous and Cenozoic time.

    abstract::Eight ecosystems that were present in the Cretaceous about 100 Ma (million years ago) in the New World eventually developed into the 12 recognized for the modern Earth. Among the forcing mechanisms that drove biotic change during this interval was a decline in global temperatures toward the end of the Cretaceous, augm...

    journal_title:American journal of botany

    pub_type: 杂志文章,评审

    doi:10.3732/ajb.1000353

    authors: Graham A

    更新日期:2011-03-01 00:00:00

  • Characterization of novel microsatellite markers for Eschscholzia californica (Papaveraceae), an invasive species in central Chile.

    abstract:PREMISE OF THE STUDY:We isolated and characterized microsatellite markers for the California poppy, Eschscholzia californica, which is an invasive species in central Chile. METHODS AND RESULTS:A total of eight polymorphic and six monomorphic loci were developed for the species. Between one and 12 alleles were observed...

    journal_title:American journal of botany

    pub_type: 杂志文章

    doi:10.3732/ajb.1200076

    authors: Véliz D,Gauci R,Bustamante RO

    更新日期:2012-09-01 00:00:00

  • Reproduction, growth, and defense trade-offs vary with gender and reproductive allocation in Ilex glabra (Aquifoliaceae).

    abstract:PREMISE OF THE STUDY:Male-biased herbivory in dioecious species is expected as a consequence of selection for increased resistance (reduced attack) in the sex with higher reproductive costs-females. Empirical support of this prediction is taxonomically restricted and fraught with exceptions. Phenological changes in res...

    journal_title:American journal of botany

    pub_type: 杂志文章

    doi:10.3732/ajb.1200603

    authors: Buckley NE,Avila-Sakar G

    更新日期:2013-02-01 00:00:00

  • Placing the woody tropical genera of Polygonaceae: A hypothesis of character evolution and phylogeny.

    abstract:UNLABELLED: PREMISE OF THE STUDY:Taxonomic groups have often been recognized on the basis of geographic distinctions rather than accurately representing evolutionary relationships. This has been particularly true for temperate and tropical members from the same family. Polygonaceae exemplifies this problem, wherein th...

    journal_title:American journal of botany

    pub_type: 杂志文章

    doi:10.3732/ajb.1000022

    authors: Burke JM,Sanchez A,Kron K,Luckow M

    更新日期:2010-08-01 00:00:00

  • Low flower-size variation in bilaterally symmetrical flowers: Support for the pollination precision hypothesis.

    abstract:PREMISE OF THE STUDY:The evolutionary shift from radial to bilateral symmetry in flowers is generally associated with the evolution of low flower-size variation. This phenomenon supports the hypothesis that the lower size variation in bilateral flowers can be attributed to low pollinator diversity. In this study, we pr...

    journal_title:American journal of botany

    pub_type: 杂志文章

    doi:10.3732/ajb.1500371

    authors: Nikkeshi A,Kurimoto D,Ushimaru A

    更新日期:2015-12-01 00:00:00

  • Differential responses to guano fertilization among tropical tree species with varying functional traits.

    abstract:PREMISE OF THE STUDY:Seabirds often cause significant changes to soil properties, and seabird-dominated systems often host unique plant communities. This study experimentally (1) examined species-specific responses to seabird guano gradients, (2) considered the role that differential functional traits among species pla...

    journal_title:American journal of botany

    pub_type: 杂志文章

    doi:10.3732/ajb.1000159

    authors: Young HS,McCauley DJ,Dirzo R

    更新日期:2011-02-01 00:00:00