Multipoint estimation of genetic maps for human trisomies with one parent or other partial data.

Abstract:

:Centromeric-mapping methods have been used to investigate the association between altered recombination and meiotic nondisjunction in humans. For trisomies, current methods are based on the genotypes from a trisomic offspring and both parents. Because it is sometimes difficult to obtain samples from both parents and because the ability to use sources of DNA previously not available (e.g., stored paraffin-embedded pathological samples) has increased, we have been interested in creating similar maps for trisomic populations in which one of the parents of the trisomic individual is unavailable for genotyping. In this paper, we derive multipoint likelihoods for both missing-parent data and conventional two-parent data. We find that likelihoods for two-parent data and for data generated without a sample from the correctly disjoining parent can be maximized in exactly the same way but also that missing-parent data has a high frequency of partial data of the same sort produced by intercross matings. Previously published centromeric-mapping methods use incorrect likelihoods for intercross matings and thus can perform poorly on missing-parent data. We wrote a FORTRAN program to maximize our multipoint likelihoods and used it in simulation studies to demonstrate the biases in the previous methods.

journal_name

Am J Hum Genet

authors

Feingold E,Brown AS,Sherman SL

doi

10.1086/302799

subject

Has Abstract

pub_date

2000-03-01 00:00:00

pages

958-68

issue

3

eissn

0002-9297

issn

1537-6605

pii

S0002-9297(07)64022-1

journal_volume

66

pub_type

杂志文章
  • The effect of methionine and 5-azacytidine on fragile X expression.

    abstract::The cellular mechanism for the expression of the fragile site at Xq28 is unknown. We tested the effect of 5-azacytidine and methionine on fragile X expression in lymphocytes and lymphoblastoid cells in an attempt to determine if DNA methylation was involved. We were unable to demonstrate a consistent dosage effect of ...

    journal_title:American journal of human genetics

    pub_type: 杂志文章

    doi:

    authors: Abruzzo MA,Mayer M,Jacobs PA

    更新日期:1985-01-01 00:00:00

  • Familial transmission of the FMR1 CGG repeat.

    abstract::To better define the nature of FMR1 CGG-repeat expansions, changes in allele sizes for 191 families with fragile X and for 33 families with gray-zone repeats (40-60) were analyzed. Expansion of the fragile X chromosome to the full mutation was seen in 13.4% of offspring from premutation mothers with 56-59 repeats, 20....

    journal_title:American journal of human genetics

    pub_type: 杂志文章

    doi:

    authors: Nolin SL,Lewis FA 3rd,Ye LL,Houck GE Jr,Glicksman AE,Limprasert P,Li SY,Zhong N,Ashley AE,Feingold E,Sherman SL,Brown WT

    更新日期:1996-12-01 00:00:00

  • Accurate and fast multiple-testing correction in eQTL studies.

    abstract::In studies of expression quantitative trait loci (eQTLs), it is of increasing interest to identify eGenes, the genes whose expression levels are associated with variation at a particular genetic variant. Detecting eGenes is important for follow-up analyses and prioritization because genes are the main entities in biol...

    journal_title:American journal of human genetics

    pub_type: 杂志文章

    doi:10.1016/j.ajhg.2015.04.012

    authors: Sul JH,Raj T,de Jong S,de Bakker PI,Raychaudhuri S,Ophoff RA,Stranger BE,Eskin E,Han B

    更新日期:2015-06-04 00:00:00

  • Spectrum of CHD7 mutations in 110 individuals with CHARGE syndrome and genotype-phenotype correlation.

    abstract::CHARGE syndrome is a well-established multiple-malformation syndrome with distinctive consensus diagnostic criteria. Characteristic associated anomalies include ocular coloboma, choanal atresia, cranial nerve defects, distinctive external and inner ear abnormalities, hearing loss, cardiovascular malformations, urogeni...

    journal_title:American journal of human genetics

    pub_type: 杂志文章

    doi:10.1086/500273

    authors: Lalani SR,Safiullah AM,Fernbach SD,Harutyunyan KG,Thaller C,Peterson LE,McPherson JD,Gibbs RA,White LD,Hefner M,Davenport SL,Graham JM,Bacino CA,Glass NL,Towbin JA,Craigen WJ,Neish SR,Lin AE,Belmont JW

    更新日期:2006-02-01 00:00:00

  • The genetics of sun sensitivity in humans.

    abstract::Humans vary >100-fold in their sensitivity to the harmful effects of ultraviolet radiation. The main determinants of sensitivity are melanin pigmentation and less-well-characterized differences in skin inflammation and repair processes. Pigmentation has a high heritability, but susceptibility to cancers of the skin, a...

    journal_title:American journal of human genetics

    pub_type: 杂志文章,评审

    doi:10.1086/425285

    authors: Rees JL

    更新日期:2004-11-01 00:00:00

  • Revertant somatic mosaicism by mitotic recombination in dyskeratosis congenita.

    abstract::Revertant mosaicism is an infrequently observed phenomenon caused by spontaneous correction of a pathogenic allele. We have observed such reversions caused by mitotic recombination of mutant TERC (telomerase RNA component) alleles in six patients from four families affected by dyskeratosis congenita (DC). DC is a mult...

    journal_title:American journal of human genetics

    pub_type: 杂志文章

    doi:10.1016/j.ajhg.2012.01.004

    authors: Jongmans MC,Verwiel ET,Heijdra Y,Vulliamy T,Kamping EJ,Hehir-Kwa JY,Bongers EM,Pfundt R,van Emst L,van Leeuwen FN,van Gassen KL,Geurts van Kessel A,Dokal I,Hoogerbrugge N,Ligtenberg MJ,Kuiper RP

    更新日期:2012-03-09 00:00:00

  • Teaching human genetics in biochemistry by computer literature searching.

    abstract::We describe a new user-intense-learning experience that incorporates the teaching of clinical and research applications of human genetics in biochemistry while training first-year medical students to develop skills in computer access to the literature. Human genetics was incorporated into the biochemistry curriculum b...

    journal_title:American journal of human genetics

    pub_type: 杂志文章

    doi:

    authors: Proud VK,Schmidt FJ,Johnson ED,Mitchell JA

    更新日期:1989-04-01 00:00:00

  • A third locus for autosomal dominant cerebellar ataxia type I maps to chromosome 14q24.3-qter: evidence for the existence of a fourth locus.

    abstract::The autosomal dominant cerebellar ataxias (ADCA) type I are a group of neurological disorders that are clinically and genetically heterogeneous. Two genes implicated in the disease, SCA1 (spinal cerebellar ataxia 1) and SCA2, are already localized. We have mapped a third locus to chromosome 14q24.3-qter, by linkage an...

    journal_title:American journal of human genetics

    pub_type: 杂志文章

    doi:

    authors: Stevanin G,Le Guern E,Ravisé N,Chneiweiss H,Dürr A,Cancel G,Vignal A,Boch AL,Ruberg M,Penet C

    更新日期:1994-01-01 00:00:00

  • A new mtDNA mutation showing accumulation with time and restriction to skeletal muscle.

    abstract::We have identified a new mutation in mtDNA, involving tRNALeu(CUN) in a patient manifesting an isolated skeletal myopathy. This heteroplasmic A-->G transition at position 12320 affects the T psi C loop at a conserved site and was not found in 120 controls. Analysis of cultured fibroblasts, white blood cells/platelets,...

    journal_title:American journal of human genetics

    pub_type: 杂志文章

    doi:

    authors: Weber K,Wilson JN,Taylor L,Brierley E,Johnson MA,Turnbull DM,Bindoff LA

    更新日期:1997-02-01 00:00:00

  • Segregation of Tay-Sachs and Sandhoff alleles in a non-Jewish family.

    abstract::A non-Jewish family is presented in which the genes for Tay-Sachs disease and Sandhoff disease are segregating. Individuals heterozygous for both alleles have low serum and white cell total hexosaminidase levels together with a proportion of heat-labile hexosaminidase A (HEX A) which falls in the normal range. The ind...

    journal_title:American journal of human genetics

    pub_type: 杂志文章

    doi:

    authors: Lane AB,Young E,Jenkins T

    更新日期:1980-11-01 00:00:00

  • Molecular and phenotypic analysis of patients with deletions within the deletion-rich region of the Duchenne muscular dystrophy (DMD) gene.

    abstract::Eighty unrelated individuals with Duchenne muscular dystrophy (DMD) or Becker muscular dystrophy (BMD) were found to have deletions in the major deletion-rich region of the DMD locus. This region includes the last five exons detected by cDNA5b-7, all exons detected by cDNA8, and the first two exons detected by cDNA9. ...

    journal_title:American journal of human genetics

    pub_type: 杂志文章

    doi:

    authors: Gillard EF,Chamberlain JS,Murphy EG,Duff CL,Smith B,Burghes AH,Thompson MW,Sutherland J,Oss I,Bodrug SE

    更新日期:1989-10-01 00:00:00

  • Human placental and intestinal alkaline phosphatase genes map to 2q34-q37.

    abstract::The alkaline phosphatases comprise a multigene enzyme family that hydolyze phosphate esters and are widely distributed in nature. Three main classes have been isolated from humans, the placental, intestinal, and liver/bone/kidney forms. We have mapped the placental and intestinal alkaline phosphatase genes to 2q34-q37...

    journal_title:American journal of human genetics

    pub_type: 杂志文章

    doi:

    authors: Griffin CA,Smith M,Henthorn PS,Harris H,Weiss MJ,Raducha M,Emanuel BS

    更新日期:1987-12-01 00:00:00

  • Partial trisomy 14 (q23 leads to qter) via segregation of a 14/X translocation.

    abstract::An infant with delayed development and multiple congenital anomalies was found to possess a duplication of 14q23 leads to qter. This imbalance arose through segregation of a maternal 14/X translocation, observed in only 28% of the mother's cells. Although the X-chromosome-derived portion of the translocation was late ...

    journal_title:American journal of human genetics

    pub_type: 杂志文章

    doi:

    authors: Cohen MM,Charrow J,Balkin NE,Harris CJ

    更新日期:1983-07-01 00:00:00

  • Deletions and point mutations of LRRC50 cause primary ciliary dyskinesia due to dynein arm defects.

    abstract::Genetic defects affecting motility of cilia and flagella cause chronic destructive airway disease, randomization of left-right body asymmetry, and, frequently, male infertility in primary ciliary dyskinesia (PCD). The most frequent defects involve outer and inner dynein arms (ODAs and IDAs) that are large multiprotein...

    journal_title:American journal of human genetics

    pub_type: 杂志文章

    doi:10.1016/j.ajhg.2009.10.018

    authors: Loges NT,Olbrich H,Becker-Heck A,Häffner K,Heer A,Reinhard C,Schmidts M,Kispert A,Zariwala MA,Leigh MW,Knowles MR,Zentgraf H,Seithe H,Nürnberg G,Nürnberg P,Reinhardt R,Omran H

    更新日期:2009-12-01 00:00:00

  • Purification and substrate specificity of polymorphic forms of esterase D from human erythrocytes.

    abstract::Esterase D (EsD), purified from human erythrocytes and tested with a variety of substrates, hydrolyzed only triacetin, tributyrin, and certain soluble aryl esters of aliphatic acids. Esters of 4-methylumbelliferone were easily the best substrates. When the three genetically different isozymes were compared, the less c...

    journal_title:American journal of human genetics

    pub_type: 杂志文章

    doi:

    authors: Scott EM,Wright RC

    更新日期:1978-01-01 00:00:00

  • Haplotypes in the dystrophin DNA segment point to a mosaic origin of modern human diversity.

    abstract::Although Africa has played a central role in human evolutionary history, certain studies have suggested that not all contemporary human genetic diversity is of recent African origin. We investigated 35 simple polymorphic sites and one T(n) microsatellite in an 8-kb segment of the dystrophin gene. We found 86 haplotype...

    journal_title:American journal of human genetics

    pub_type: 杂志文章

    doi:10.1086/378777

    authors: Zietkiewicz E,Yotova V,Gehl D,Wambach T,Arrieta I,Batzer M,Cole DE,Hechtman P,Kaplan F,Modiano D,Moisan JP,Michalski R,Labuda D

    更新日期:2003-11-01 00:00:00

  • Human nonsyndromic hereditary deafness DFNA17 is due to a mutation in nonmuscle myosin MYH9.

    abstract::The authors had previously mapped a new locus-DFNA17, for nonsyndromic hereditary hearing impairment-to chromosome 22q12.2-q13. 3. DFNA17 spans a 17- to 23-cM region, and MYH9, a nonmuscle-myosin heavy-chain gene, is located within the linked region. Because of the importance of myosins in hearing, MYH9 was tested as ...

    journal_title:American journal of human genetics

    pub_type: 杂志文章

    doi:10.1016/S0002-9297(07)62942-5

    authors: Lalwani AK,Goldstein JA,Kelley MJ,Luxford W,Castelein CM,Mhatre AN

    更新日期:2000-11-01 00:00:00

  • Pulsed-field electrophoresis screening for immunoglobulin heavy-chain constant-region (IGHC) multigene deletions and duplications.

    abstract::Genome regions containing multiple copies of homologous genes, such as the immunoglobulin (Ig) heavy-chain constant-region (IGHC) locus, are often unstable and give rise to duplicated and deleted haplotypes. Analysis of such processes is fundamental to understanding the mechanisms of evolution of multigene families. I...

    journal_title:American journal of human genetics

    pub_type: 杂志文章

    doi:

    authors: Bottaro A,Cariota U,DeMarchi M,Carbonara AO

    更新日期:1991-04-01 00:00:00

  • A higher mutational burden in females supports a "female protective model" in neurodevelopmental disorders.

    abstract::Increased male prevalence has been repeatedly reported in several neurodevelopmental disorders (NDs), leading to the concept of a "female protective model." We investigated the molecular basis of this sex-based difference in liability and demonstrated an excess of deleterious autosomal copy-number variants (CNVs) in f...

    journal_title:American journal of human genetics

    pub_type: 杂志文章

    doi:10.1016/j.ajhg.2014.02.001

    authors: Jacquemont S,Coe BP,Hersch M,Duyzend MH,Krumm N,Bergmann S,Beckmann JS,Rosenfeld JA,Eichler EE

    更新日期:2014-03-06 00:00:00

  • Application of DNA-DNA hybridization of dual labeled probes to the detection of trisomy 21, monosomy 21, and sex determination.

    abstract::Chromosomal aneuploidy is usually identified by cytogenetic methods. However, for some purposes it would be desirable to have an easier method of recognizing specific trisomies or monosomies. We have devised such an assay. It involves the simultaneous hybridization of two chromosome-specific DNA probes labeled with di...

    journal_title:American journal of human genetics

    pub_type: 杂志文章

    doi:

    authors: Dahl HH,Choo KH,Danks DM

    更新日期:1988-10-01 00:00:00

  • c-Ha-ras-1 oncogene lies between beta-globin and insulin loci on human chromosome 11p.

    abstract::DNA sequence polymorphisms have been used to determine the linear order and recombinational distances separating the Harvey ras 1 oncogene (c-Ha-ras-1), beta-globin, insulin, and parathyroid hormone genes on the short arm of human chromosome 11. Our results indicate that c-Ha-ras-1 is closely linked to both the beta-g...

    journal_title:American journal of human genetics

    pub_type: 杂志文章

    doi:

    authors: Fearon ER,Antonarakis SE,Meyers DA,Levine MA

    更新日期:1984-03-01 00:00:00

  • Closing the gap: inverting the genetics curriculum to ensure an informed public.

    abstract::Over the past 20 years, the focus of national efforts to improve K-12 science education has ranged from curriculum and professional development of teachers to the adoption of science standards and high-stakes testing. In spite of this work, students in the United States continue to lag behind their peers in other coun...

    journal_title:American journal of human genetics

    pub_type: 杂志文章

    doi:10.1016/j.ajhg.2009.05.010

    authors: Dougherty MJ

    更新日期:2009-07-01 00:00:00

  • Isolation and regional localization of DNA segments revealing polymorphic loci from human chromosome 13.

    abstract::A recombinant DNA library enriched for portions of human chromosome 13 has been constructed from a hamster-human somatic cell hybrid that contained human chromosomes 13, 12, and 6p. A total of 733 phages were identified that contain human DNA inserts, and 46 single-copy subfragments have been derived and used as probe...

    journal_title:American journal of human genetics

    pub_type: 杂志文章

    doi:

    authors: Cavenee W,Leach R,Mohandas T,Pearson P,White R

    更新日期:1984-01-01 00:00:00

  • Linkage analysis of the apolipoprotein C2 gene and myotonic dystrophy on human chromosome 19 reveals linkage disequilibrium in a French-Canadian population.

    abstract::The gene for human apolipoprotein C2 (APOC2), situated on the proximal long arm of chromosome 19, is closely linked to the gene for the most common form of adult muscular dystrophy, myotonic dystrophy (DM). Six APOC2 RFLPs (TaqI, BglI, BanI, BamHI, NcoI, and AvaII) have been identified to date. We have conducted a com...

    journal_title:American journal of human genetics

    pub_type: 杂志文章

    doi:

    authors: MacKenzie AE,MacLeod HL,Hunter AG,Korneluk RG

    更新日期:1989-01-01 00:00:00

  • Analysis in a large hyperkalemic periodic paralysis pedigree supports tight linkage to a sodium channel locus.

    abstract::Hyperkalemic periodic paralysis (HYPP) is an autosomal dominant muscle disease with electrophysiological abnormalities suggesting a defect in a voltage-gated sodium channel (NaCh) gene. A human NaCh gene was recently shown to cosegregate with the disease allele in a family with HYPP. Using an independent clone, we hav...

    journal_title:American journal of human genetics

    pub_type: 杂志文章

    doi:

    authors: Ptacek LJ,Tyler F,Trimmer JS,Agnew WS,Leppert M

    更新日期:1991-08-01 00:00:00

  • Heritable fragile sites on human chromosomes. IX. Population cytogenetics and segregation analysis of the BrdU-requiring fragile site at 10q25.

    abstract::The frequencies of the bromodeoxyuridine (BrdU)-requiring fragile site at 10q25 in 1,026 unselected neonates, 901 patients referred for chromosome studies, and 87 institutionalized retardates were not significantly different from each other. The gene frequency was .013, and the population was in Hardy-Weinberg equilib...

    journal_title:American journal of human genetics

    pub_type: 杂志文章

    doi:

    authors: Sutherland GR

    更新日期:1982-09-01 00:00:00

  • Carrier detection in Sandhoff disease.

    abstract::Three new cases of Sandhoff disease are reported. One infant was the second affected child in a large family. The parents, who were cousins, were part of a large kindred from an isolated community in northern Saskatchewan. We assayed total and heat-stable hexosaminidases in 38 other members of the kindred and found tw...

    journal_title:American journal of human genetics

    pub_type: 杂志文章

    doi:

    authors: Lowden JA,Ives EJ,Keene DL,Burton AL,Skomorowski MA,Howard F

    更新日期:1978-01-01 00:00:00

  • Multipoint interval mapping of quantitative trait loci, using sib pairs.

    abstract::The sib-pair interval-mapping procedure of Fulker and Cardon is extended to take account of all available marker information on a chromosome simultaneously. The method provides a computationally fast multipoint analysis of sib-pair data, using a modified Haseman-Elston approach. It gives results very similar to those ...

    journal_title:American journal of human genetics

    pub_type: 杂志文章

    doi:

    authors: Fulker DW,Cherny SS,Cardon LR

    更新日期:1995-05-01 00:00:00

  • Importance sampling. I. Computing multimodel p values in linkage analysis.

    abstract::In linkage analysis, when the lod score is maximized over multiple genetic models, standard asymptotic approximation of the significance level does not apply. Monte Carlo methods can be used to estimate the p value, but procedures currently used are extremely inefficient. We propose a Monte Carlo procedure based on th...

    journal_title:American journal of human genetics

    pub_type: 杂志文章

    doi:

    authors: Kong A,Frigge M,Irwin M,Cox N

    更新日期:1992-12-01 00:00:00

  • A DNA polymorphism in close physical linkage with the proopiomelanocortin gene.

    abstract::Cellular DNAs from a panel of 20 unrelated individuals were screened for restriction fragment length polymorphisms (RFLP) with a DNA probe containing the first exon of the proopiomelanocortin gene (POMC), which has been assigned to chromosome 2p23-25. Digestion with the restriction endonuclease Sst 1 revealed a high f...

    journal_title:American journal of human genetics

    pub_type: 杂志文章

    doi:

    authors: Feder J,Migone N,Chang AC,Cochet M,Cohen SN,Cann H,Cavalli-Sforza LL

    更新日期:1983-11-01 00:00:00