Integrated metagenomic and metaproteomic analyses reveal potential degradation mechanism of azo dye-Direct Black G by thermophilic microflora.

Abstract:

:Direct Black G (DBG) is a typical toxic azo dye with extensive applications but it poses a serious threat to the aquatic ecosystem and humans. It is necessary to efficiently and safely remove DBG from environments by the application of various treatment technologies. A thermophilic microflora previously isolated from the soil can effectively metabolize DBG. However, the molecular basis of DBG degradation by this thermophilic microflora remains unknown. In this study, metagenomic sequencing technology and qRT-PCR have been used to elucidate the functional potential of genes and their modes of action on DBG. A quantitative metaproteomic method was further utilized to identify the relative functional proteins involved. Subsequently, the possible co-metabolic molecular mechanisms of DBG degradation by candidate genes and functional proteins of the thermophilic microflora were illustrated. The combination of metagenomics and metaproteomics to investigate the degradation of DBG by a microflora was reported for the first time in recent literature; this can further provide a deep insight into the molecular degradation mechanism of dye pollutants by natural microflora.

journal_name

Ecotoxicol Environ Saf

authors

An X,Chen Y,Chen G,Feng L,Zhang Q

doi

10.1016/j.ecoenv.2020.110557

subject

Has Abstract

pub_date

2020-06-15 00:00:00

pages

110557

eissn

0147-6513

issn

1090-2414

pii

S0147-6513(20)30396-1

journal_volume

196

pub_type

杂志文章
  • Effect of chlorophenols on isolated plant mitochondria activities: a QSAR study.

    abstract::Twenty-three chlorinated monophenols were investigated for their uncoupling and inhibitory properties on plant mitochondria. All the studied compounds had uncoupling properties but their activity was submitted to quantitative changes from 1- to 400-fold, according to the substitution. They also had inhibitory properti...

    journal_title:Ecotoxicology and environmental safety

    pub_type: 杂志文章

    doi:10.1016/0147-6513(85)90048-x

    authors: Ravanel P,Taillandier G,Tissut M,Benoit-Guyod JL

    更新日期:1985-06-01 00:00:00

  • Cadmium stress tolerance in wheat seedlings induced by ascorbic acid was mediated by NO signaling pathways.

    abstract::Ascorbic acid (AsA) and nitric oxide (NO) are well known and widespread antioxidants and gaseous molecules that regulate plant tolerance to several stresses. However, the relationship between them in plant response to stress, especially heavy stress, is largely unclear. This study demonstrated that both AsA and NO cou...

    journal_title:Ecotoxicology and environmental safety

    pub_type: 杂志文章

    doi:10.1016/j.ecoenv.2016.09.013

    authors: Wang Z,Li Q,Wu W,Guo J,Yang Y

    更新日期:2017-01-01 00:00:00

  • Possible role of HMA4a TILLING mutants of Brassica rapa in cadmium phytoremediation programs.

    abstract::Cadmium (Cd) is a dangerous transition element that causes environmental and health problems due to its high mobility in the soil-plant system. In plants, Cd causes serious alterations in physiological processes, affecting different vital functions such as photosynthesis. Species such as Brassica juncea and Brassica r...

    journal_title:Ecotoxicology and environmental safety

    pub_type: 杂志文章

    doi:10.1016/j.ecoenv.2019.04.081

    authors: Navarro-León E,Oviedo-Silva J,Ruiz JM,Blasco B

    更新日期:2019-09-30 00:00:00

  • Effects of 2,4-dichlorophenoxyacetic acid in artificial acid rain on Brassica napus and Sinapis alba.

    abstract::The effect of 2,4-dichlorophenoxyacetic (2,4-D) acid in artificial rain at pH 3.3 was examined for young plants of rape (Brassica napus L.) and white mustard (Sinapis alba L.). Plants were treated in a closed simulation chamber system with varying CO2 supply (198-418 ppm). Single or daily showers were applied for 20-3...

    journal_title:Ecotoxicology and environmental safety

    pub_type: 杂志文章

    doi:10.1016/0147-6513(84)90002-2

    authors: Løkke H

    更新日期:1984-08-01 00:00:00

  • Human health risk visualization of potentially toxic elements in farmland soil: A combined method of source and probability.

    abstract::Human health is adversely affected by potentially toxic elements (PTEs) in the topsoil, entering the bodies via inhalation, ingestion, and dermal contact. To visualize human health risks, we investigated five PTEs (Cd, As, Pb, Hg, and Cr) in 72 farmland topsoil samples from a town in Chongqing City, southwest China. B...

    journal_title:Ecotoxicology and environmental safety

    pub_type: 杂志文章

    doi:10.1016/j.ecoenv.2021.111922

    authors: Kong F,Chen Y,Huang L,Yang Z,Zhu K

    更新日期:2021-01-17 00:00:00

  • Screening ornamental plants to identify potential Cd hyperaccumulators for bioremediation.

    abstract::To identify possible cadmium (Cd) accumulators or hyperaccumulators among ornamental plants, a pot experiment involving increasing Cd concentration (0, 5, 15, 30, 60, and 100 mg kg-1) was conducted among seven species. The principal objective was to screen for ornamental plants with an exceptional ability to accumulat...

    journal_title:Ecotoxicology and environmental safety

    pub_type: 杂志文章

    doi:10.1016/j.ecoenv.2018.06.049

    authors: Wu M,Luo Q,Liu S,Zhao Y,Long Y,Pan Y

    更新日期:2018-10-30 00:00:00

  • Lack of dietary calcium effect on chlordecone increased white blood cell count, total iron, and iron-binding capacity in serum of rat.

    abstract::Male Sprague-Dawley rats were treated with 0, 1, 10, 50, and 100 ppm of chlordecone (Cd) mixed in calcium-sufficient (Ca-S) or calcium-deficient (Ca-D) diet for 15 days. The control rats fed with Ca-D diet exhibited a significant increase in white blood cell (WBC) counts compared to the rats fed with Ca-S diet. Dietar...

    journal_title:Ecotoxicology and environmental safety

    pub_type: 杂志文章

    doi:10.1006/eesa.1996.0034

    authors: Chetty KN,Fantroy L,Landau G,Ivie GW

    更新日期:1996-04-01 00:00:00

  • Combined effects of traffic air pollution and home environmental factors on preterm birth in China.

    abstract:BACKGROUND:Although mounting evidence have linked traffic-related air pollution (TRAP) with increased risk of preterm birth (PTB), whether it can interact with indoor environmental factors remains unknown, and its window(s) susceptibility at the stage of gestation is unclear. OBJECTIVE:To explore PTB risk for prenatal...

    journal_title:Ecotoxicology and environmental safety

    pub_type: 杂志文章

    doi:10.1016/j.ecoenv.2019.109639

    authors: Lu C,Cao L,Norbäck D,Li Y,Chen J,Deng Q

    更新日期:2019-11-30 00:00:00

  • Heavy metal (Pb, Zn, Cd, Fe, and Cu) contents of plant foliage near the Anvil Range lead/zinc mine, Faro, Yukon Territory.

    abstract::Mining and processing of lead (Pb)/zinc (Zn) ore at the Anvil Range mine occurred near the town of Faro in the Yukon Territory, Canada, for approximately 30 years, beginning in 1968. A study was undertaken to examine whether the mining activities had left a detectable "footprint" on the environment in the way of heavy...

    journal_title:Ecotoxicology and environmental safety

    pub_type: 杂志文章

    doi:10.1006/eesa.2002.2201

    authors: Pugh RE,Dick DG,Fredeen AL

    更新日期:2002-07-01 00:00:00

  • A nomogram for predicting the renal dysfunction in a Chinese population with reduction in cadmium exposure based on an 8 years follow up study.

    abstract::Cadmium exposure is associated with renal dysfunction. However, the outcome of renal function in subjects who have had a reduction in cadmium exposure for years has not been completely clarified, particularly for individuals with normal baseline renal function. In this study, we used a nomogram model to predict renal ...

    journal_title:Ecotoxicology and environmental safety

    pub_type: 杂志文章

    doi:10.1016/j.ecoenv.2020.110251

    authors: Chen X,Chen X,Wang Y,Wang X,Wang M,Liang Y,Zhu G,Jin T

    更新日期:2020-03-15 00:00:00

  • High temperature damage to fatty acids and carbohydrate metabolism in tall fescue by coupling deep transcriptome and metabolome analysis.

    abstract::High temperature damage impairs the growth of tall fescue by inhibiting secondary metabolites. Little is known about the regulation pattern of the fatty acids and carbohydrate metabolism at the whole-transcriptome level in tall fescue under high temperature stress. Here, two tall fescue genotypes, heat tolerant PI5787...

    journal_title:Ecotoxicology and environmental safety

    pub_type: 杂志文章

    doi:10.1016/j.ecoenv.2020.110943

    authors: Hu T,Sun XY,Zhao ZJ,Amombo E,Fu JM

    更新日期:2020-10-15 00:00:00

  • Adaptation of bacteria Escherichia coli in presence of quaternary ammonium ionic liquids.

    abstract::This paper presents the adaptation of Escherichia coli Gram-negative bacteria to increased concentrations of ionic liquids. Theophylline-based quaternary ammonium salts were used as an example of an ionic liquid that on the one hand includes an anion of natural origin and on the other hand is characterized by amphiphi...

    journal_title:Ecotoxicology and environmental safety

    pub_type: 杂志文章

    doi:10.1016/j.ecoenv.2018.08.048

    authors: Borkowski A,Gutowski Ł,Syczewski M,Cłapa T,Czerwonka G

    更新日期:2018-11-30 00:00:00

  • DNA damage and micronuclei in parthenogenetic and bisexual Darevskia rock lizards from the areas with different levels of soil pollution.

    abstract::Natural species are widely used as indicator organisms to estimate of the impact of environmental pollution. Here we present the results of first study of a reliability of parthenogenetic Darevskia аrmeniaca and bisexual Darevskia raddei rock lizards as sentinels for monitoring of environmental genotoxicity. The comet...

    journal_title:Ecotoxicology and environmental safety

    pub_type: 杂志文章

    doi:10.1016/j.ecoenv.2018.02.025

    authors: Simonyan A,Hovhannisyan G,Sargsyan A,Arakelyan M,Minasyan S,Aroutiounian R

    更新日期:2018-06-15 00:00:00

  • Characteristic of adsorption, desorption, and co-transport of vanadium on humic acid colloid.

    abstract::Understanding the interactions between humic acid colloid (HAC) and vanadium (V) in soils is of great importance in forecasting the behaviors and fates of V in the soil and groundwater systems. This study investigated the characteristics and factors that affect V adsorption-desorption by the HAC; meanwhile, we also ex...

    journal_title:Ecotoxicology and environmental safety

    pub_type: 杂志文章

    doi:10.1016/j.ecoenv.2019.110087

    authors: Chen L,Zhu YY,Luo HQ,Yang JY

    更新日期:2020-03-01 00:00:00

  • Responses of abalone Haliotis diversicolor to sublethal exposure of waterborne and dietary silver and cadmium.

    abstract::In this study, we examined the chronic waterborne and dietary exposure of silver (Ag) and cadmium (Cd) to the abalone Haliotis diversicolor using various endpoints such as growth and feeding rates, metal body burden, subcellular distribution, and metallothionein (MT) concentration over a period of 7 weeks of exposure....

    journal_title:Ecotoxicology and environmental safety

    pub_type: 杂志文章

    doi:10.1016/j.ecoenv.2010.05.018

    authors: Huang X,Guo F,Ke C,Wang WX

    更新日期:2010-09-01 00:00:00

  • Short-term toxicity of lindane, hexachlorobenzene, and copper sulfate to tubificid sludgeworms (Oligochaeta) in artificial media.

    abstract::The toxicity of lindane, hexachlorobenzene, and copper sulfate to Tubifex tubifex and Limnodrilus hoffmeisteri was determined using an easily applicable and standardizable 72-h short-term test system. It was designed for the quick assessment of sublethal and lethal effects of sediment-associated chemicals on the worms...

    journal_title:Ecotoxicology and environmental safety

    pub_type: 杂志文章

    doi:10.1006/eesa.1997.1603

    authors: Meller M,Egeler P,Römbke J,Schallnass H,Nagel R,Streit B

    更新日期:1998-01-01 00:00:00

  • The effect of salinity and alkalinity on growth and the accumulation of copper and zinc in the Chlorophyta Ulva fasciata.

    abstract::Copper and zinc accumulation in macroalgae is a complex issue. While these metals exist as micronutrients and can serve to add nutritional value to the macroalgae when consumed by both plants and animals, elevated levels of the metals can reduce growth or even kill the algae. Many water parameters can influence the to...

    journal_title:Ecotoxicology and environmental safety

    pub_type: 杂志文章

    doi:10.1016/j.ecoenv.2019.01.088

    authors: Geddie AW,Hall SG

    更新日期:2019-05-15 00:00:00

  • Selenium impacts on razorback sucker, Colorado: Colorado River III. Larvae.

    abstract::Razorback sucker (Xyrauchen texanus) larvae from adults exposed to selenium at three sites near Grand Junction, Colorado, for 9 months were used in a 30-day waterborne and dietary selenium study. Selenium concentrations in water averaged <1.6 microg/L from 24-Road, 0.9 microg/L from Horsethief, 5.5 microg/L from Adobe...

    journal_title:Ecotoxicology and environmental safety

    pub_type: 杂志文章

    doi:10.1016/j.ecoenv.2004.07.004

    authors: Hamilton SJ,Holley KM,Buhl KJ,Bullard FA

    更新日期:2005-06-01 00:00:00

  • Allelopathy appraisal of worm metabolites in the synergistic effect between Limnodrilus hoffmeisteri and Potamogeton malaianus on algal suppression.

    abstract::In Chinese Lake Taihu, the algal quantity was significantly larger in summer than late spring (p < 0.01). In summer, compared with the dredged area including neither zoobenthos nor submerged macrophytes, the algal biomass and density were significantly lower in the area filled with the submerged macrophytes. Interesti...

    journal_title:Ecotoxicology and environmental safety

    pub_type: 杂志文章

    doi:10.1016/j.ecoenv.2019.109482

    authors: Zuo S,Wang H,Gan LD,Shao M

    更新日期:2019-10-30 00:00:00

  • Protective activity of ellagic acid in counteract oxidative stress damage in zebrafish embryonic development.

    abstract::During its development, embryo is easily susceptible to reactive oxygen species (ROS). Evidence demonstrate protective role of the antioxidants, improving both cellular growth and embryonic development. Among these, ellagic acid (EA) is a natural antioxidant with anti-inflammatory and anti-carcinogen properties. The a...

    journal_title:Ecotoxicology and environmental safety

    pub_type: 杂志文章

    doi:10.1016/j.ecoenv.2020.110642

    authors: Mottola F,Scudiero N,Iovine C,Santonastaso M,Rocco L

    更新日期:2020-07-01 00:00:00

  • Photolytic and photocatalytic transformation of an antipsychotic drug asenapine: Comparison of kinetics, identification of transformation products, and in silico estimation of their properties.

    abstract::The photolytic and photocatalytic transformation of an antipsychotic drug asenapine with the use of H2O2 and TiO2 was studied. A method employing irradiation with a simulated full solar spectrum in the photostability chamber was applied, then the reverse-phase ultra high performance liquid chromatography with diode ar...

    journal_title:Ecotoxicology and environmental safety

    pub_type: 杂志文章

    doi:10.1016/j.ecoenv.2018.07.010

    authors: Trawiński J,Skibiński R

    更新日期:2018-10-30 00:00:00

  • Evaluation of impairment of DNA in marine gastropod, Morula granulata as a biomarker of marine pollution.

    abstract::The impairment of DNA in marine gastropod Morula granulata was evaluated in terms of the loss of DNA integrity in the species as a measure of the impact of genotoxic contaminants prevalent in the marine environment along the coast of Goa, India. The extent of DNA damage occurred in the marine gastropods collected from...

    journal_title:Ecotoxicology and environmental safety

    pub_type: 杂志文章

    doi:10.1016/j.ecoenv.2014.04.023

    authors: Sarkar A,Bhagat J,Sarker S

    更新日期:2014-08-01 00:00:00

  • Adsorption of Cr (VI) onto micro- and nanoparticles of palygorskite in aqueous solutions: Effects of pH and humic acid.

    abstract::Palygorskite is a mineral widely applied for the removal of potentially toxic trace elements from the environment. This study aimed to identify the influence of pH (3, 4, 5, and 6) and humic acid (200 mg L-1) addition on the adsorption of hexavalent chromium (Cr (VI)) ions by the microparticles and nanoparticles of pa...

    journal_title:Ecotoxicology and environmental safety

    pub_type: 杂志文章

    doi:10.1016/j.ecoenv.2020.111247

    authors: Rouhaninezhad AA,Hojati S,Masir MN

    更新日期:2020-12-15 00:00:00

  • Absorption, accumulation and distribution of metals and nutrient elements in poplars planted in land amended with composted sewage sludge: A field trial.

    abstract::Interest in the application of sewage sludge as amendments to grow trees has continued to increase, especially for fast-growing trees such as poplars. In this study, two-year field trial was conducted to determine the effects of compost sewage sludge (CSS) soil application on the distributions of metal and nutrient el...

    journal_title:Ecotoxicology and environmental safety

    pub_type: 杂志文章

    doi:10.1016/j.ecoenv.2019.06.043

    authors: Guoqing X,Xiuqin C,Liping B,Hongtao Q,Haibo L

    更新日期:2019-10-30 00:00:00

  • Anguilla anguilla L. stress biomarkers recovery in clean water and secondary-treated pulp mill effluent.

    abstract::The eels' recovery from capture, anoxia, and transport is improved by the dechlorinated filtered aerated tap water temperature increase and increased water salinity. The eels' 6-hr recovery from capture, anoxia, and transport, at 25 degrees C in 50% secondary-treated bleached kraft pulp mill effluent, as plasma lactat...

    journal_title:Ecotoxicology and environmental safety

    pub_type: 杂志文章

    doi:10.1006/eesa.1996.0086

    authors: Santos MA,Pacheco M

    更新日期:1996-10-01 00:00:00

  • Nonylphenol biodegradation in river sediment and associated shifts in community structures of bacteria and ammonia-oxidizing microorganisms.

    abstract::Nonylphenol (NP) is one of commonly detected contaminants in the environment. Biological degradation is mainly responsible for remediation of NP-contaminated site. Knowledge about the structure of NP-degrading microbial community is still very limited. Microcosms were constructed to investigate the structure of microb...

    journal_title:Ecotoxicology and environmental safety

    pub_type: 杂志文章

    doi:10.1016/j.ecoenv.2014.04.019

    authors: Wang Z,Yang Y,Sun W,Xie S,Liu Y

    更新日期:2014-08-01 00:00:00

  • Added risk approach to derive maximum permissible concentrations for heavy metals: how to take natural background levels into account.

    abstract::A unified method is presented to derive maximum permissible concentrations (MPCs) of xenobiotic and naturally occurring substances. The method relies upon risk limitation expressed as the maximum potentially affected fraction of all possible species (PAFmax) in a component ecosystem, due to a bioavailable concentratio...

    journal_title:Ecotoxicology and environmental safety

    pub_type: 杂志文章

    doi:10.1006/eesa.1997.1534

    authors: Struijs J,van de Meent D,Peijnenburg WJ,van den Hoop MA,Crommentuijn T

    更新日期:1997-07-01 00:00:00

  • Oral Co-Exposures to zinc oxide nanoparticles and CdCl2 induced maternal-fetal pollutant transfer and embryotoxicity by damaging placental barriers.

    abstract::Synergistic toxicity from multiple environmental pollutants poses greater threat to humans, especially to susceptible pregnant population. Here we evaluated combined toxicity from environment pollutants zinc oxide nanoparticles (ZnO NPs) and cadmium chloride (CdCl2) using two pregnant mice models established by oral a...

    journal_title:Ecotoxicology and environmental safety

    pub_type: 杂志文章

    doi:10.1016/j.ecoenv.2019.109956

    authors: Teng C,Jia J,Wang Z,Yan B

    更新日期:2020-02-01 00:00:00

  • Soil incubation studies with Cry1Ac protein indicate no adverse effect of Bt crops on soil microbial communities.

    abstract::Bt crops that are transgenic crops engineered to produce Bt toxins which occur naturally with Bacillus thuringiensis (Bt) have been widely planted and its environmental risk assessment has been heavily debated. The effects of Bt crops on soil microbial communities are possible through changing the quantity and quality...

    journal_title:Ecotoxicology and environmental safety

    pub_type: 杂志文章

    doi:10.1016/j.ecoenv.2017.12.054

    authors: Zhaolei L,Naishun B,Xueping C,Jun C,Manqiu X,Zhiping S,Ming N,Changming F

    更新日期:2018-05-15 00:00:00

  • Multigenerational effects of triclosan on the demography of Plationus patulus and Brachionus havanaensis (ROTIFERA).

    abstract::Triclosan is a personal care product widely used in North America, Europe and Asia as antimicrobial ingredient in many consumer chemical products. In Mexico concentrations of triclosan have been reported in aquatic systems. However, there is no law regulating the presence of chemicals such as triclosan, in aquatic sys...

    journal_title:Ecotoxicology and environmental safety

    pub_type: 杂志文章

    doi:10.1016/j.ecoenv.2017.08.049

    authors: González-Pérez BK,Sarma SSS,Castellanos-Páez ME,Nandini S

    更新日期:2018-01-01 00:00:00