Abstract:
:The PathoSystems Resource Integration Center (PATRIC) is the bacterial Bioinformatics Resource Center funded by the National Institute of Allergy and Infectious Diseases (https://www.patricbrc.org). PATRIC supports bioinformatic analyses of all bacteria with a special emphasis on pathogens, offering a rich comparative analysis environment that provides users with access to over 250 000 uniformly annotated and publicly available genomes with curated metadata. PATRIC offers web-based visualization and comparative analysis tools, a private workspace in which users can analyze their own data in the context of the public collections, services that streamline complex bioinformatic workflows and command-line tools for bulk data analysis. Over the past several years, as genomic and other omics-related experiments have become more cost-effective and widespread, we have observed considerable growth in the usage of and demand for easy-to-use, publicly available bioinformatic tools and services. Here we report the recent updates to the PATRIC resource, including new web-based comparative analysis tools, eight new services and the release of a command-line interface to access, query and analyze data.
journal_name
Nucleic Acids Resjournal_title
Nucleic acids researchauthors
Davis JJ,Wattam AR,Aziz RK,Brettin T,Butler R,Butler RM,Chlenski P,Conrad N,Dickerman A,Dietrich EM,Gabbard JL,Gerdes S,Guard A,Kenyon RW,Machi D,Mao C,Murphy-Olson D,Nguyen M,Nordberg EK,Olsen GJ,Olson RD,Overbdoi
10.1093/nar/gkz943subject
Has Abstractpub_date
2020-01-08 00:00:00pages
D606-D612issue
D1eissn
0305-1048issn
1362-4962pii
5610343journal_volume
48pub_type
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journal_title:Nucleic acids research
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journal_title:Nucleic acids research
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journal_title:Nucleic acids research
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journal_title:Nucleic acids research
pub_type: 杂志文章
doi:10.1093/nar/gkh858
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