Genome-wide analysis of Chongqing native intersexual goats using next-generation sequencing.

Abstract:

:Sex reversal has been studied extensively in vertebrate species, particularly in domestic goats, because polled intersex syndrome (PIS) has seriously affected their production efficiency. In the present study, we used histopathologically diagnosed cases of PIS to identify correlated genomic regions and variants using representative selection signatures and performed GWAS using Restriction-Site Associated Resequencing DNA. We identified 171 single-nucleotide polymorphisms (SNPs) that may have contributed to this phenotype, and 53 SNPs were determined to be located in coding regions using a general linear model. The transcriptome data sets of differentially expressed genes (DEGs) in the pituitary tissues of intersexual and nonintersexual goats were examined using high-throughput technology. A total of 10,063 DEGs and 337 long noncoding RNAs were identified. The DEGs were clustered into 56 GO categories and determined to be significantly enriched in 53 signaling pathways by KEGG analysis. In addition, according to qPCR results, PSPO2 and FSH were significantly more highly expressed in sexually mature pituitary tissues of intersexual goats compared to healthy controls (nonintersexual). These results demonstrate that certain novel potential genomic regions may be responsible for intersexual goats, and the transcriptome data indicate that the regulation of various physiological systems is involved in intersexual goat development. Therefore, these results provide helpful data for understanding the molecular mechanisms of intersex syndrome in goats.

journal_name

3 Biotech

journal_title

3 Biotech

authors

E GX,Jin ML,Zhao YJ,Li XL,Li LH,Yang BG,Duan XH,Huang YF

doi

10.1007/s13205-019-1612-0

subject

Has Abstract

pub_date

2019-03-01 00:00:00

pages

99

issue

3

eissn

2190-572X

issn

2190-5738

pii

1612

journal_volume

9

pub_type

杂志文章
  • Pectin from muskmelon (Cucumis melo var. reticulatus) peels: extraction optimization and physicochemical properties.

    abstract::Pectin derived from plant waste sources is currently focused as an economical and eco-friendly approach. Optimization of pectin extraction from muskmelon peel by response surface methodology (RSM) was investigated in this study. Box-Behnken Design (BBD) was used to identify the optimal level of the extraction variable...

    journal_title:3 Biotech

    pub_type: 杂志文章

    doi:10.1007/s13205-017-0655-3

    authors: Muthukumaran C,Banupriya L,Harinee S,Sivaranjani S,Sharmila G,Rajasekar V,Kumar NM

    更新日期:2017-05-01 00:00:00

  • Enhanced production of berberine in In vitro regenerated cell of Tinospora cordifolia and its analysis through LCMS QToF.

    abstract::Tinospora cordifolia is a prioritized medicinal plant and having an immense medicinal importance especially in Indian medicinal system. But this plant needs a regeneration protocol for its rapid propagation. An efficient regeneration protocol was developed for T. cordifolia using nodal explants. High frequency of mult...

    journal_title:3 Biotech

    pub_type: 杂志文章

    doi:10.1007/s13205-016-0592-6

    authors: Mittal J,Sharma MM

    更新日期:2017-05-01 00:00:00

  • Fractionation of lignocellulosic biopolymers from sugarcane bagasse using formic acid-catalyzed organosolv process.

    abstract::A one-step formic acid-catalyzed organosolv process using a low-boiling point acid-solvent system was studied for fractionation of sugarcane bagasse. Compared to H2SO4, the use of formic acid as a promoter resulted in higher efficiency and selectivity on removals of hemicellulose and lignin with increased enzymatic di...

    journal_title:3 Biotech

    pub_type: 杂志文章

    doi:10.1007/s13205-018-1244-9

    authors: Suriyachai N,Champreda V,Kraikul N,Techanan W,Laosiripojana N

    更新日期:2018-05-01 00:00:00

  • Inhibition of respiratory syncytial virus replication and suppression of RSV-induced airway inflammation in neonatal rats by colchicine.

    abstract::The present study investigated the role of colchicine in the treatment of RSV infection. Treatment of BEAS-2B cells following RSV infection with colchicine caused a significant decrease in the number of viral plaques. In RSV-infected BEAS-2B cells' treatment with colchicine leads to a significant up-regulation of both...

    journal_title:3 Biotech

    pub_type: 杂志文章

    doi:10.1007/s13205-019-1917-z

    authors: Lu N,Yang Y,Liu H,Ding X,Ou Y,Xia J,Du Y

    更新日期:2019-11-01 00:00:00

  • Biodegradation of propiconazole by newly isolated Burkholderia sp. strain BBK_9.

    abstract::The isolation of propiconazole (PCZ) degrading bacterium BBK_9 strain was done from paddy soil, and it was identified as Burkholderia sp. based on the morphological characteristics and biochemical properties combined with 16S rRNA gene sequencing analysis. It has been seen that the factors such as temperature and pH i...

    journal_title:3 Biotech

    pub_type: 杂志文章

    doi:10.1007/s13205-016-0429-3

    authors: Satapute P,Kaliwal B

    更新日期:2016-06-01 00:00:00

  • Saccharification of water hyacinth biomass by a combination of steam explosion with enzymatic technologies for bioethanol production.

    abstract::In the present work, bioethanol was produced by sugar fermentation obtained from water hyacinth using a novelty hybrid method composed of steam explosion and enzymatic hydrolysis, using hydrolytic enzymes produced by solid-state fermentation and water hyacinth as substrate. The highest activity, 42 U for xylanase and ...

    journal_title:3 Biotech

    pub_type: 杂志文章

    doi:10.1007/s13205-020-02426-8

    authors: Figueroa-Torres LA,Lizardi-Jiménez MA,López-Ramírez N,Varela-Santos EC,Hernández-Rosas F,Favela-Torres E,Hernández-Martínez R

    更新日期:2020-10-01 00:00:00

  • Degradation of p-chlorocresol by facultative Thauera sp. strain DO.

    abstract::In this work, Thauera sp. DO isolated from sludge and sediment utilized p-chlorocresol and some related compounds as the sole carbon and energy sources under both aerobic and anaerobic conditions. The pathways for p-chlorocresol in the isolate under each condition were different. Under the aerobic condition, p-chloroc...

    journal_title:3 Biotech

    pub_type: 杂志文章

    doi:10.1007/s13205-019-2025-9

    authors: Ha DD,Nguyen OT

    更新日期:2020-02-01 00:00:00

  • Expression and purification of a gene encoding a 9.7 kDa PE protein of Mycobacterium avium subsp. paratuberculosis.

    abstract::Mycobacterium avium subsp. paratuberculosis (Map) contains PE family antigens which are Proline and glutamic acid rich and may play important role as T-cell antigens. In the present study, the Map 1507 ORF encoding 9.7 kDa PE protein was amplified by polymerase chain reaction and cloned into E. coli vector pQE30 UA. T...

    journal_title:3 Biotech

    pub_type:

    doi:10.1007/s13205-016-0506-7

    authors: Sekar SC,Goswami PP,Deb R

    更新日期:2016-12-01 00:00:00

  • Purification, characterization and anticancer evaluation of l-methioninase from Trichoderma harzianum.

    abstract::The Trichoderma harzianum l-methioninase was purified 7.15-fold with a recovery of 47.9% and the specific activity of 74.4 U/mg of protein. The purified enzyme has an apparent molecular mass of 48 kDa on SDS-PAGE and exhibited maximum activity at pH 8 and 35 °C. The enzyme was catalytically stable below 50 °C and at a...

    journal_title:3 Biotech

    pub_type: 杂志文章

    doi:10.1007/s13205-020-02494-w

    authors: Salim N,Santhiagu A,Joji K

    更新日期:2020-11-01 00:00:00

  • Erythropoietin protects neurons from apoptosis via activating PI3K/AKT and inhibiting Erk1/2 signaling pathway.

    abstract::The aim of this study was to explore the neuroprotective effect and the underlying mechanism of erythropoietin (EPO) on the cortical neuronal cells insulted with oxygen and glucose deprivation (OGD). Different concentrations of EPO were used to determine the anti-apoptosis effect of EPO. In addition, PI3K inhibitor LY...

    journal_title:3 Biotech

    pub_type: 杂志文章

    doi:10.1007/s13205-019-1667-y

    authors: Si W,Wang J,Li M,Qu H,Gu R,Liu R,Wang L,Li S,Hu X

    更新日期:2019-04-01 00:00:00

  • Bacterial community shift in the coastal Gulf of Mexico salt-marsh sediment microcosm in vitro following exposure to the Mississippi Canyon Block 252 oil (MC252).

    abstract::In this study, we examined the responses by the indigenous bacterial communities in salt-marsh sediment microcosms in vitro following treatment with Mississippi Canyon Block 252 oil (MC252). Microcosms were constructed of sediment and seawater collected from Bayou La Batre located in coastal Alabama on the Gulf of Mex...

    journal_title:3 Biotech

    pub_type: 杂志文章

    doi:10.1007/s13205-014-0233-x

    authors: Koo H,Mojib N,Huang JP,Donahoe RJ,Bej AK

    更新日期:2015-08-01 00:00:00

  • The influence of agitation on oil substrate dispersion and oxygen transfer in Pseudomonas aeruginosa USM-AR2 fermentation producing rhamnolipid in a stirred tank bioreactor.

    abstract::Water-immiscible substrate, diesel, was supplied as the main substrate in the fermentation of Pseudomonas aeruginosa USM-AR2 producing rhamnolipid biosurfactant, in a stirred tank bioreactor. In addition to the typical gas-aqueous system, this system includes gas-hydrocarbon-aqueous phases and the presence of surfacta...

    journal_title:3 Biotech

    pub_type: 杂志文章

    doi:10.1007/s13205-017-0828-0

    authors: Nur Asshifa MN,Zambry NS,Salwa MS,Yahya ARM

    更新日期:2017-07-01 00:00:00

  • Bacterial diversity in intestinal mucosa of mice fed with Dendrobium officinale and high-fat diet.

    abstract::This study aimed to explore the effect of Dendrobium officinale (DO) on the diversity of intestinal mucosal flora in high-fat diet mice and provided an experimental basis for the development and research of DO and its series products. Twenty-four mice were randomly assigned to four equal groups of six mice, namely the...

    journal_title:3 Biotech

    pub_type: 杂志文章

    doi:10.1007/s13205-020-02558-x

    authors: Li X,Peng X,Guo K,Tan Z

    更新日期:2021-01-01 00:00:00

  • Genetic diversity and population structure of watermelon (Citrullus sp.) genotypes.

    abstract::Genetic polymorphism amid plant species is a crucial factor for plant improvement and maintaining their biodiversity. Evaluation of genetic diversity amongst plant species is significant to deal with the environmental stress conditions and their effective involvement in the breeding programs. Hence, in present study, ...

    journal_title:3 Biotech

    pub_type: 杂志文章

    doi:10.1007/s13205-019-1736-2

    authors: Pandey A,Khan MK,Isik R,Turkmen O,Acar R,Seymen M,Hakki EE

    更新日期:2019-06-01 00:00:00

  • Sequence-based approach for rapid identification of cross-clade CD8+ T-cell vaccine candidates from all high-risk HPV strains.

    abstract::Human papilloma virus (HPV) is the primary etiological agent responsible for cervical cancer in women. Although in total 16 high-risk HPV strains have been identified so far. Currently available commercial vaccines are designed by targeting mainly HPV16 and HPV18 viral strains as these are the most common strains asso...

    journal_title:3 Biotech

    pub_type: 杂志文章

    doi:10.1007/s13205-015-0352-z

    authors: Singh KP,Verma N,Akhoon BA,Bhatt V,Gupta SK,Gupta SK,Smita S

    更新日期:2016-06-01 00:00:00

  • A novel cyclodextrin glucanotransferase from an alkaliphile Microbacterium terrae KNR 9: purification and properties.

    abstract::Cyclodextrin glucanotransferase (CGTase, EC. 2.1.1.19) produced using new alkaliphile Microbacterium terrae KNR 9 has been purified to homogeneity in a single step by the starch adsorption method. The specific activity of the purified CGTase was 45 U/mg compared to crude 0.9 U/mg. This resulted in a 50-fold purificati...

    journal_title:3 Biotech

    pub_type: 杂志文章

    doi:10.1007/s13205-016-0495-6

    authors: Rajput KN,Patel KC,Trivedi UB

    更新日期:2016-12-01 00:00:00

  • Mechanisms underlying the wound healing and tissue regeneration properties of Chenopodium album.

    abstract::In the current study, aerial parts (leaves, stem and shoots) of C. album were extracted with methanol and subjected to phytochemical and HPLC analysis. Agar well diffusion method was used for anti-bacterial activity against Gram-negative strains Escherichia coli, Salmonella typhi, Klebsiella, Pseudomonas aeruginosa an...

    journal_title:3 Biotech

    pub_type: 杂志文章

    doi:10.1007/s13205-020-02436-6

    authors: Said A,Naeem N,Siraj S,Khan T,Javed A,Rasheed HM,Sajjad W,Shah K,Wahid F

    更新日期:2020-10-01 00:00:00

  • Transcriptome analysis of the effect of GA3 in sugarcane culm.

    abstract::Our earlier studies have indicated that GA3, being a growth hormone, increases internodal length, in turn increasing sink strength and improving sucrose accumulation in sugarcane. In this study, transcriptomic level analysis was carried out on internodal samples of a high sugar accumulating variety (CoLk 94184) of sug...

    journal_title:3 Biotech

    pub_type: 杂志文章

    doi:10.1007/s13205-019-1908-0

    authors: Chandra A,Roopendra K,Verma I

    更新日期:2019-10-01 00:00:00

  • Evaluating water deficit and glyphosate treatment on the accumulation of phenolic compounds and photosynthesis rate in transgenic Codonopsis lanceolata (Siebold & Zucc.) Trautv. over-expressing γ-tocopherol methyltransferase (γ-tmt) gene.

    abstract::The effect of water stress and herbicide treatment on the phenolic compound concentration and photosynthesis rate in transgenic Codonopsis lanceolata plants over-expressing the γ-tmt gene was investigated and compared to that in control non-transgenic C. lanceolata plants. The total phenolic compound content was inves...

    journal_title:3 Biotech

    pub_type: 杂志文章

    doi:10.1007/s13205-017-0795-5

    authors: Ghimire BK,Son NY,Kim SH,Yu CY,Chung IM

    更新日期:2017-07-01 00:00:00

  • Developmental stage-associated microbiota profile of the peach fruit fly, Bactrocera zonata (Diptera: Tephritidae) and their functional prediction using 16S rRNA gene metabarcoding sequencing.

    abstract::The different developmental stage-associated microbiota of the peach fruit fly, Bactrocera zonata (Diptera: Tephritidae), was characterized using 16S rRNA gene (V3-V4 region) metabarcoding on the Illumina HiSeq platform. Taxonomically, at 97% similarity, there were total 16 bacterial phyla, comprising of 24 classes, 5...

    journal_title:3 Biotech

    pub_type: 杂志文章

    doi:10.1007/s13205-020-02381-4

    authors: Naaz N,Choudhary JS,Choudhary A,Dutta A,Das B

    更新日期:2020-09-01 00:00:00

  • Agricultural residues for cellulolytic enzyme production by Aspergillus niger: effects of pretreatment.

    abstract::Different agricultural residues were considered in this study for their ability to support cellulolytic enzyme production by Aspergillus niger. A total of eleven agricultural residues including finger millet hulls, sorghum hulls, soybean hulls, groundnut husk, banana peels, corn stalk, cassava peels, sugarcane bagasse...

    journal_title:3 Biotech

    pub_type:

    doi:10.1007/s13205-015-0294-5

    authors: Salihu A,Abbas O,Sallau AB,Alam MZ

    更新日期:2015-12-01 00:00:00

  • Identification and characterization of PEBP family genes reveal CcFT8 a probable candidate for photoperiod insensitivity in C. cajan.

    abstract::Understanding the molecular mechanism underlying photoperiod sensitivity will play a crucial role in extending the cropping area of Cajanus cajan, a photoperiod sensitive major grain legume of India and Africa. In flowering plants, Flowering locus T (FT) gene is involved in the production of florigen molecule which is...

    journal_title:3 Biotech

    pub_type: 杂志文章

    doi:10.1007/s13205-020-02180-x

    authors: Tribhuvan KU,Das A,Srivastava H,Kumar K,Durgesh K,Sandhya,Mithra SVA,Jain PK,Gaikwad K

    更新日期:2020-05-01 00:00:00

  • Effective production of keratinase by gellan gum-immobilised Alcaligenes sp. AQ05-001 using heavy metal-free and polluted feather wastes as substrates.

    abstract::The ability of gellan gum-immobilised cells of the heavy metal-tolerant bacterium Alcaligenes sp. AQ05-001 to utilise both heavy metal-free and heavy metal-polluted feathers (HMPFs) as substrates to produce keratinase enzyme was studied. Optimisation of the media pH, incubation temperature and immobilisation parameter...

    journal_title:3 Biotech

    pub_type: 杂志文章

    doi:10.1007/s13205-018-1555-x

    authors: Yusuf I,Ahmad SA,Phang LY,Yasid NA,Shukor MY

    更新日期:2019-01-01 00:00:00

  • Molecular identification and genetic diversity among Photorhabdus and Xenorhabdus isolates.

    abstract::Five bacterial strains were isolated from the hemocoel of the greater wax moth larvae (Galleria mellonella) infected with the entomopathogenic nematodes: Heterorhabditis bacteriophora HP88, Heterorhabditis indicus RM1 and Heterorhabditis sp (S1), Steinernema abbasi and Steinernema sp. (S II). Strains were identified a...

    journal_title:3 Biotech

    pub_type: 杂志文章

    doi:10.1007/s13205-016-0594-4

    authors: Moghaieb REA,Abdelhadi AA,El-Sadawy HA,Allam NAT,Baiome BA,Soliman MH

    更新日期:2017-05-01 00:00:00

  • Hot springs of Indian Himalayas: potential sources of microbial diversity and thermostable hydrolytic enzymes.

    abstract::Microbial communities in hot springs at high elevations have been extensively studied worldwide. In this sense, the Indian Himalaya regions is valuable ecosystems for providing both the extreme 'cold' and 'hot' sites for exploring microbial diversity. In the present study, a total of 140 thermophilic bacteria were iso...

    journal_title:3 Biotech

    pub_type: 杂志文章

    doi:10.1007/s13205-017-0762-1

    authors: Sahay H,Yadav AN,Singh AK,Singh S,Kaushik R,Saxena AK

    更新日期:2017-06-01 00:00:00

  • A high storage density strategy for digital information based on synthetic DNA.

    abstract::DNA has been recognized as a promising natural medium for information storage. The expensive DNA synthesis process makes it an important challenge to utilize DNA nucleotides optimally and increase the storage density. Thus, a novel scheme is proposed for the storage of digital information in synthetic DNA with high st...

    journal_title:3 Biotech

    pub_type: 杂志文章

    doi:10.1007/s13205-019-1868-4

    authors: Zhang S,Huang B,Song X,Zhang T,Wang H,Liu Y

    更新日期:2019-09-01 00:00:00

  • Effect of gene order in DNA constructs on gene expression upon integration into plant genome.

    abstract::Several plant biotechnology applications are based on the expression of multiple genes located on a single transformation vector. The principles of stable expression of foreign genes in plant cells include integration of full-length gene fragments consisting of promoter and transcription terminator sequences, and avoi...

    journal_title:3 Biotech

    pub_type: 杂志文章

    doi:10.1007/s13205-017-0729-2

    authors: Aydın Akbudak M,Srivastava V

    更新日期:2017-06-01 00:00:00

  • New insights into the role of nanotechnology in microbial food safety.

    abstract::Today, the role of nanotechnology in human life is undeniable as a broad range of industries, particularly food and medicine sectors, have been dramatically influenced. Nanomaterials can contribute to food safety by forming new nano-sized ingredients with modified physicochemical characteristics. Nanotechnologies can ...

    journal_title:3 Biotech

    pub_type: 杂志文章,评审

    doi:10.1007/s13205-020-02409-9

    authors: Rahmati F,Hosseini SS,Mahuti Safai S,Asgari Lajayer B,Hatami M

    更新日期:2020-10-01 00:00:00

  • In vitro bioactivity, antimicrobial and anti-inflammatory efficacy of modified solvent evaporation assisted Trametes versicolor extract.

    abstract::In the present study, modified solvent evaporation assisted methanolic Trametes versicolor extract was evaluated for its antimicrobial and anti-inflammatory efficacy. Mushroom extract showed significantly (p < 0.05) higher total phenolic content (48.71 mg/g) followed by total flavonoid content (13.13 mg/g), ascorbic a...

    journal_title:3 Biotech

    pub_type: 杂志文章

    doi:10.1007/s13205-020-02397-w

    authors: Bains A,Chawla P

    更新日期:2020-09-01 00:00:00

  • Molecular characterization and amplified ribosomal DNA restriction analysis of entomopathogenic bacteria associated with Rhabditis (Oscheius) spp.

    abstract::Bacterial strains associated with entomopathogenic nematodes (EPNs) Rhabditis (Oscheius) spp. were isolated from infected cadavers of Galleria mellonella. The obtained 18 isolates were subdivided into nine phylogenetically different genera based on comparative sequence analysis of their 16S rRNA genes. The isolates we...

    journal_title:3 Biotech

    pub_type: 杂志文章

    doi:10.1007/s13205-015-0326-1

    authors: Sangeetha BG,Jayaprakas CA,Siji JV,Rajitha M,Shyni B,Mohandas C

    更新日期:2016-06-01 00:00:00