Genetic diversity, connectivity and gene flow along the distribution of the emblematic Atlanto-Mediterranean sponge Petrosia ficiformis (Haplosclerida, Demospongiae).

Abstract:

BACKGROUND:Knowledge about the distribution of the genetic variation of marine species is fundamental to address species conservation and management strategies, especially in scenarios with mass mortalities. In the Mediterranean Sea, Petrosia ficiformis is one of the species most affected by temperature-related diseases. Our study aimed to assess its genetic structure, connectivity, and bottleneck signatures to understand its evolutionary history and to provide information to help design conservation strategies of sessile marine invertebrates. RESULTS:We genotyped 280 individuals from 19 locations across the entire distribution range of P. ficiformis in the Atlanto-Mediterranean region at 10 microsatellite loci. High levels of inbreeding were detected in most locations (especially in the Macaronesia and the Western Mediterranean) and bottleneck signatures were only detected in Mediterranean populations, although not coinciding entirely with those with reported die-offs. We detected strong significant population differentiation, with the Atlantic populations being the most genetically isolated, and show that six clusters explained the genetic structure along the distribution range of this sponge. Although we detected a pattern of isolation by distance in P. ficiformis when all locations were analyzed together, stratified Mantel tests revealed that other factors could be playing a more prominent role than isolation by distance. Indeed, we detected a strong effect of oceanographic barriers impeding the gene flow among certain areas, the strongest one being the Almeria-Oran front, hampering gene flow between the Atlantic Ocean and the Mediterranean Sea. Finally, migration and genetic diversity distribution analyses suggest a Mediterranean origin for the species. CONCLUSIONS:In our study Petrosia ficiformis showed extreme levels of inbreeding and population differentiation, which could all be linked to the poor swimming abilities of the larva. However, the observed moderate migration patterns are highly difficult to reconcile with such poor larval dispersal, and suggest that, although unlikely, dispersal may also be achieved in the gamete phase. Overall, because of the high genetic diversity in the Eastern Mediterranean and frequent mass mortalities in the Western Mediterranean, we suggest that conservation efforts should be carried out specifically in those areas of the Mediterranean to safeguard the genetic diversity of the species.

journal_name

BMC Evol Biol

journal_title

BMC evolutionary biology

authors

Riesgo A,Taboada S,Pérez-Portela R,Melis P,Xavier JR,Blasco G,López-Legentil S

doi

10.1186/s12862-018-1343-6

subject

Has Abstract

pub_date

2019-01-16 00:00:00

pages

24

issue

1

issn

1471-2148

pii

10.1186/s12862-018-1343-6

journal_volume

19

pub_type

杂志文章
  • Cytogenetic relationships among Citrullus species in comparison with some genera of the tribe Benincaseae (Cucurbitaceae) as inferred from rDNA distribution patterns.

    abstract:BACKGROUND:Comparative mapping of 5S and 45S rDNA by fluorescent in situ hybridization (FISH) technique is an excellent tool to determine cytogenetic relationships among closely related species. RESULTS:In this study, the number and position of 5S and 45S rDNA loci in all Citrullus species and subspecies were determin...

    journal_title:BMC evolutionary biology

    pub_type: 杂志文章

    doi:10.1186/s12862-016-0656-6

    authors: Li KP,Wu YX,Zhao H,Wang Y,Lü XM,Wang JM,Xu Y,Li ZY,Han YH

    更新日期:2016-04-18 00:00:00

  • Synonymous site conservation in the HIV-1 genome.

    abstract:BACKGROUND:Synonymous or silent mutations are usually thought to evolve neutrally. However, accumulating recent evidence has demonstrated that silent mutations may destabilize RNA structures or disrupt cis regulatory motifs superimposed on coding sequences. Such observations suggest the existence of stretches of codon ...

    journal_title:BMC evolutionary biology

    pub_type: 杂志文章

    doi:10.1186/1471-2148-13-164

    authors: Mayrose I,Stern A,Burdelova EO,Sabo Y,Laham-Karam N,Zamostiano R,Bacharach E,Pupko T

    更新日期:2013-08-04 00:00:00

  • Transcriptomic analysis confirms differences among nuclear genomes of cryptic earthworm lineages living in sympatry.

    abstract:BACKGROUND:Many earthworm species demonstrate significant cryptic diversity, with several highly diverged mitochondrial lineages found within most of the taxa studied to date. The status of differences between these lineages on the nuclear level is still unclear. Because of widespread polyploidy in earthworms, most stu...

    journal_title:BMC evolutionary biology

    pub_type: 杂志文章

    doi:10.1186/s12862-019-1370-y

    authors: Shekhovtsov SV,Ershov NI,Vasiliev GV,Peltek SE

    更新日期:2019-02-26 00:00:00

  • Unravelling the role of host plant expansion in the diversification of a Neotropical butterfly genus.

    abstract:BACKGROUND:Understanding the processes underlying diversification is a central question in evolutionary biology. For butterflies, access to new host plants provides opportunities for adaptive speciation. On the one hand, locally abundant host species can generate ecologically significant selection pressure. But a diver...

    journal_title:BMC evolutionary biology

    pub_type: 杂志文章

    doi:10.1186/s12862-016-0701-5

    authors: McClure M,Elias M

    更新日期:2016-06-16 00:00:00

  • Multigene phylogenetic analysis redefines dung beetles relationships and classification (Coleoptera: Scarabaeidae: Scarabaeinae).

    abstract:BACKGROUND:Dung beetles (subfamily Scarabaeinae) are popular model organisms in ecology and developmental biology, and for the last two decades they have experienced a systematics renaissance with the adoption of modern phylogenetic approaches. Within this period 16 key phylogenies and numerous additional studies with ...

    journal_title:BMC evolutionary biology

    pub_type: 杂志文章

    doi:10.1186/s12862-016-0822-x

    authors: Tarasov S,Dimitrov D

    更新日期:2016-11-29 00:00:00

  • Quantifying the threat of extinction from Muller's ratchet in the diploid Amazon molly (Poecilia formosa).

    abstract:BACKGROUND:The Amazon molly (Poecilia formosa) is a small unisexual fish that has been suspected of being threatened by extinction from the stochastic accumulation of slightly deleterious mutations that is caused by Muller's ratchet in non-recombining populations. However, no detailed quantification of the extent of th...

    journal_title:BMC evolutionary biology

    pub_type: 杂志文章

    doi:10.1186/1471-2148-8-88

    authors: Loewe L,Lamatsch DK

    更新日期:2008-03-19 00:00:00

  • Adaptive evolution in the toxicity of a spider's venom enzymes.

    abstract:BACKGROUND:Sphingomyelinase D is the main toxin present in the venom of Loxosceles spiders. Several isoforms present in these venoms can be structurally classified in two groups. Class I Sphingomyelinase D contains a single disulphide bridge and variable loop. Class II Sphingomyelinase D presents an additional intracha...

    journal_title:BMC evolutionary biology

    pub_type: 杂志文章

    doi:10.1186/s12862-015-0561-4

    authors: Pedroso A,Matioli SR,Murakami MT,Pidde-Queiroz G,Tambourgi DV

    更新日期:2015-12-21 00:00:00

  • The crowns have eyes: multiple opsins found in the eyes of the crown-of-thorns starfish Acanthaster planci.

    abstract:BACKGROUND:Opsins are G protein-coupled receptors used for both visual and non-visual photoreception, and these proteins evolutionarily date back to the base of the bilaterians. In the current sequencing age, phylogenomic analysis has proven to be a powerful tool, facilitating the increase in knowledge about diversity ...

    journal_title:BMC evolutionary biology

    pub_type: 杂志文章

    doi:10.1186/s12862-018-1276-0

    authors: Lowe EK,Garm AL,Ullrich-Lüter E,Cuomo C,Arnone MI

    更新日期:2018-11-12 00:00:00

  • ADGRL4/ELTD1 is a highly conserved angiogenesis-associated orphan adhesion GPCR that emerged with the first vertebrates and comprises 3 evolutionary variants.

    abstract:BACKGROUND:Our laboratory identified ADGRL4/ELTD1, an orphan GPCR belonging to the adhesion GPCR (aGPCR) family, as a novel regulator of angiogenesis and a potential anti-cancer therapeutic target. Little is known about how ADGRL4/ELTD1 (and aGPCRs in general) function, a problem compounded by a lack of known ligands o...

    journal_title:BMC evolutionary biology

    pub_type: 杂志文章

    doi:10.1186/s12862-019-1445-9

    authors: Favara DM,Banham AH,Harris AL

    更新日期:2019-07-12 00:00:00

  • Phylogeny, structural evolution and functional diversification of the plant PHOSPHATE1 gene family: a focus on Glycine max.

    abstract:BACKGROUND:PHOSPHATE1 (PHO1) gene family members have diverse roles in plant growth and development, and they have been studied in Arabidopsis, rice, and Physcomitrella. However, it has yet to be described in other plants. Therefore, we surveyed the evolutionary patterns of genomes within the plant PHO1 gene family, fo...

    journal_title:BMC evolutionary biology

    pub_type: 杂志文章

    doi:10.1186/1471-2148-13-103

    authors: He L,Zhao M,Wang Y,Gai J,He C

    更新日期:2013-05-24 00:00:00

  • Anchored enrichment dataset for true flies (order Diptera) reveals insights into the phylogeny of flower flies (family Syrphidae).

    abstract:BACKGROUND:Anchored hybrid enrichment is a form of next-generation sequencing that uses oligonucleotide probes to target conserved regions of the genome flanked by less conserved regions in order to acquire data useful for phylogenetic inference from a broad range of taxa. Once a probe kit is developed, anchored hybrid...

    journal_title:BMC evolutionary biology

    pub_type: 杂志文章

    doi:10.1186/s12862-016-0714-0

    authors: Young AD,Lemmon AR,Skevington JH,Mengual X,Ståhls G,Reemer M,Jordaens K,Kelso S,Lemmon EM,Hauser M,De Meyer M,Misof B,Wiegmann BM

    更新日期:2016-06-29 00:00:00

  • The effect of three environmental conditions on the fitness of cytochrome P450 monooxygenase-mediated permethrin resistance in Culex pipiens quinquefasciatus.

    abstract:BACKGROUND:The evolution of insecticide resistance and persistence of resistance phenotypes are influenced by the fitness of resistance alleles in the absence of insecticide pressure. Experimental determination of fitness is difficult, but fitness can be inferred by measuring changes in allele frequencies in appropriat...

    journal_title:BMC evolutionary biology

    pub_type: 杂志文章

    doi:10.1186/1471-2148-9-42

    authors: Hardstone MC,Lazzaro BP,Scott JG

    更新日期:2009-02-19 00:00:00

  • Rapid evolution and copy number variation of primate RHOXF2, an X-linked homeobox gene involved in male reproduction and possibly brain function.

    abstract:BACKGROUND:Homeobox genes are the key regulators during development, and they are in general highly conserved with only a few reported cases of rapid evolution. RHOXF2 is an X-linked homeobox gene in primates. It is highly expressed in the testicle and may play an important role in spermatogenesis. As male reproductive...

    journal_title:BMC evolutionary biology

    pub_type: 杂志文章

    doi:10.1186/1471-2148-11-298

    authors: Niu AL,Wang YQ,Zhang H,Liao CH,Wang JK,Zhang R,Che J,Su B

    更新日期:2011-10-12 00:00:00

  • Phylogenetic signal and functional categories in Proteobacteria genomes.

    abstract:BACKGROUND:A comprehensive evolutionary analysis of bacterial genomes implies to identify the hallmark of vertical and non-vertical signals and to discriminate them from the presence of mere phylogenetic noise. In this report we have addressed the impact of factors like the universal distribution of the genes, their es...

    journal_title:BMC evolutionary biology

    pub_type: 杂志文章

    doi:10.1186/1471-2148-7-S1-S7

    authors: Comas I,Moya A,González-Candelas F

    更新日期:2007-02-08 00:00:00

  • A DNA and morphology based phylogenetic framework of the ant genus Lasius with hypotheses for the evolution of social parasitism and fungiculture.

    abstract:BACKGROUND:Ants of the genus Lasius are ecologically important and an important system for evolutionary research. Progress in evolutionary research has been hindered by the lack of a well-founded phylogeny of the subgenera, with three previous attempts disagreeing. Here we employed two mitochondrial genes (cytochrome c...

    journal_title:BMC evolutionary biology

    pub_type: 杂志文章

    doi:10.1186/1471-2148-8-237

    authors: Maruyama M,Steiner FM,Stauffer C,Akino T,Crozier RH,Schlick-Steiner BC

    更新日期:2008-08-19 00:00:00

  • Complex patterns of reticulate evolution in opportunistic weeds (Potentilla L., Rosaceae), as revealed by low-copy nuclear markers.

    abstract:BACKGROUND:Most cinquefoils (Potentilla L., Rosaceae) are polyploids, ranging from tetraploid (4x) to dodecaploid (12x), diploids being a rare exception. Previous studies based on ribosomal and chloroplast data indicated that Norwegian cinquefoil (P. norvegica L.) has genetic material from two separate clades within Po...

    journal_title:BMC evolutionary biology

    pub_type: 杂志文章

    doi:10.1186/s12862-020-1597-7

    authors: Persson NL,Eriksson T,Smedmark JEE

    更新日期:2020-03-18 00:00:00

  • The evolution of the coding exome of the Arabidopsis species--the influences of DNA methylation, relative exon position, and exon length.

    abstract:BACKGROUND:The evolution of the coding exome is a major driving force of functional divergence both between species and between protein isoforms. Exons at different positions in the transcript or in different transcript isoforms may (1) mutate at different rates due to variations in DNA methylation level; and (2) serve...

    journal_title:BMC evolutionary biology

    pub_type: 杂志文章

    doi:10.1186/1471-2148-14-145

    authors: Chen FC,Chuang TJ,Lin HY,Hsu MK

    更新日期:2014-06-25 00:00:00

  • Serotonin immunoreactive interneurons in the brain of the Remipedia: new insights into the phylogenetic affinities of an enigmatic crustacean taxon.

    abstract:BACKGROUND:Remipedia, a group of homonomously segmented, cave-dwelling, eyeless arthropods have been regarded as basal crustaceans in most early morphological and taxonomic studies. However, molecular sequence information together with the discovery of a highly differentiated brain led to a reconsideration of their phy...

    journal_title:BMC evolutionary biology

    pub_type: 杂志文章

    doi:10.1186/1471-2148-12-168

    authors: Stemme T,Iliffe TM,Bicker G,Harzsch S,Koenemann S

    更新日期:2012-09-05 00:00:00

  • The role of chromosome variation in the speciation of the red brocket deer complex: the study of reproductive isolation in females.

    abstract:BACKGROUND:The red brocket deer, Mazama americana, has at least six distinct karyotypes in different regions of South America that suggest the existence of various species that are today all referred to as M. americana. From an evolutionary perspective, the red brockets are a relatively recent clade that has gone throu...

    journal_title:BMC evolutionary biology

    pub_type: 杂志文章

    doi:10.1186/1471-2148-14-40

    authors: Cursino MS,Salviano MB,Abril VV,Zanetti Edos S,Duarte JM

    更新日期:2014-03-04 00:00:00

  • Convergent evolution, habitat shifts and variable diversification rates in the ovenbird-woodcreeper family (Furnariidae).

    abstract:BACKGROUND:The Neotropical ovenbird-woodcreeper family (Furnariidae) is an avian group characterized by exceptionally diverse ecomorphological adaptations. For instance, members of the family are known to construct nests of a remarkable variety. This offers a unique opportunity to examine whether changes in nest design...

    journal_title:BMC evolutionary biology

    pub_type: 杂志文章

    doi:10.1186/1471-2148-9-268

    authors: Irestedt M,Fjeldså J,Dalén L,Ericson PG

    更新日期:2009-11-21 00:00:00

  • Detecting the molecular scars of evolution in the Mycobacterium tuberculosis complex by analyzing interrupted coding sequences.

    abstract:BACKGROUND:Computer-assisted analyses have shown that all bacterial genomes contain a small percentage of open reading frames with a frameshift or in-frame stop codon We report here a comparative analysis of these interrupted coding sequences (ICDSs) in six isolates of M. tuberculosis, two of M. bovis and one of M. afr...

    journal_title:BMC evolutionary biology

    pub_type: 杂志文章

    doi:10.1186/1471-2148-8-78

    authors: Deshayes C,Perrodou E,Euphrasie D,Frapy E,Poch O,Bifani P,Lecompte O,Reyrat JM

    更新日期:2008-03-06 00:00:00

  • Frequent birth-and-death events throughout perforin-1 evolution.

    abstract:BACKGROUND:Through its ability to open pores in cell membranes, perforin-1 plays a key role in the immune system. Consistent with this role, the gene encoding perforin shows hallmarks of complex evolutionary events, including amplification and pseudogenization, in multiple species. A large proportion of these events oc...

    journal_title:BMC evolutionary biology

    pub_type: 杂志文章

    doi:10.1186/s12862-020-01698-1

    authors: Araujo-Voces M,Quesada V

    更新日期:2020-10-19 00:00:00

  • Beneficial laggards: multilevel selection, cooperative polymorphism and division of labour in threshold public good games.

    abstract:BACKGROUND:The origin and stability of cooperation is a hot topic in social and behavioural sciences. A complicated conundrum exists as defectors have an advantage over cooperators, whenever cooperation is costly so consequently, not cooperating pays off. In addition, the discovery that humans and some animal populatio...

    journal_title:BMC evolutionary biology

    pub_type: 杂志文章

    doi:10.1186/1471-2148-10-336

    authors: Boza G,Számadó S

    更新日期:2010-11-02 00:00:00

  • Museomics of tree squirrels: a dense taxon sampling of mitogenomes reveals hidden diversity, phenotypic convergence, and the need of a taxonomic overhaul.

    abstract:BACKGROUND:Tree squirrels (Sciuridae, Sciurini), in particular the highly diverse Neotropical lineages, are amongst the most rapidly diversifying branches of the mammal tree of life but also some of the least known. Negligence of this group by systematists is likely a product of the difficulties in assessing morphologi...

    journal_title:BMC evolutionary biology

    pub_type: 杂志文章

    doi:10.1186/s12862-020-01639-y

    authors: de Abreu-Jr EF,Pavan SE,Tsuchiya MTN,Wilson DE,Percequillo AR,Maldonado JE

    更新日期:2020-06-26 00:00:00

  • Assortative mating and fragmentation within dog breeds.

    abstract:BACKGROUND:There are around 400 internationally recognized dog breeds in the world today, with a remarkable diversity in size, shape, color and behavior. Breeds are considered to be uniform groups with similar physical characteristics, shaped by selection rooted in human preferences. This has led to a large genetic dif...

    journal_title:BMC evolutionary biology

    pub_type: 杂志文章

    doi:10.1186/1471-2148-8-28

    authors: Björnerfeldt S,Hailer F,Nord M,Vilà C

    更新日期:2008-01-28 00:00:00

  • Differential selection on gene translation efficiency between the filamentous fungus Ashbya gossypii and yeasts.

    abstract:BACKGROUND:The filamentous fungus Ashbya gossypii grows into a multicellular mycelium that is distinct from the unicellular morphology of its closely related yeast species. It has been proposed that genes important for cell cycle regulation play central roles for such phenotypic differences. Because A. gossypii shares ...

    journal_title:BMC evolutionary biology

    pub_type: 杂志文章

    doi:10.1186/1471-2148-8-343

    authors: Jiang H,Zhang Y,Sun J,Wang W,Gu Z

    更新日期:2008-12-29 00:00:00

  • Key biosynthetic gene subfamily recruited for pheromone production prior to the extensive radiation of Lepidoptera.

    abstract:BACKGROUND:Moths have evolved highly successful mating systems, relying on species-specific mixtures of sex pheromone components for long-distance mate communication. Acyl-CoA desaturases are key enzymes in the biosynthesis of these compounds and to a large extent they account for the great diversity of pheromone struc...

    journal_title:BMC evolutionary biology

    pub_type: 杂志文章

    doi:10.1186/1471-2148-8-270

    authors: Liénard MA,Strandh M,Hedenström E,Johansson T,Löfstedt C

    更新日期:2008-10-02 00:00:00

  • Population and colony structure of an ant with territorial males, Cardiocondyla venustula.

    abstract:BACKGROUND:Many species of social insects have large-scale mating and dispersal flights and their populations are therefore often relatively homogenous. In contrast, dispersal on the wing appears to be uncommon in most species of the ant genus Cardiocondyla, because its males are wingless and the winged queens mate in ...

    journal_title:BMC evolutionary biology

    pub_type: 杂志文章

    doi:10.1186/s12862-019-1448-6

    authors: Jacobs S,Heinze J

    更新日期:2019-06-06 00:00:00

  • Tracing the origin of functional and conserved domains in the human proteome: implications for protein evolution at the modular level.

    abstract:BACKGROUND:The functional repertoire of the human proteome is an incremental collection of functions accomplished by protein domains evolved along the Homo sapiens lineage. Therefore, knowledge on the origin of these functionalities provides a better understanding of the domain and protein evolution in human. The lack ...

    journal_title:BMC evolutionary biology

    pub_type: 杂志文章

    doi:10.1186/1471-2148-6-91

    authors: Pal LR,Guda C

    更新日期:2006-11-07 00:00:00

  • Resolving ambiguity in the phylogenetic relationship of genotypes A, B, and C of hepatitis B virus.

    abstract:BACKGROUND:Hepatitis B virus (HBV) is an important infectious agent that causes widespread concern because billions of people are infected by at least 8 different HBV genotypes worldwide. However, reconstruction of the phylogenetic relationship between HBV genotypes is difficult. Specifically, the phylogenetic relation...

    journal_title:BMC evolutionary biology

    pub_type: 杂志文章

    doi:10.1186/1471-2148-13-120

    authors: Jiang Y,Wang M,Zheng H,Wang WR,Jin L,He Y

    更新日期:2013-06-11 00:00:00