Dyadobacter luticola sp. nov., isolated from a sewage sediment sample.

Abstract:

:A Gram-stain-negative, non-motile, aerobic bacterial strain, designated T17T was isolated from a sample of sewage sediment from a Busan park (Republic of Korea). Phylogenetic analysis based on 16S rRNA gene sequences showed that strain T17T had the highest 16S rRNA gene sequence similarity to Dyadobacter soli KCTC 22481T (97.3 %), D.yadobacter fermentans DSM 18053T (97.1 %) and D.yadobacter sediminis CGMCC 1.12895T (97.1 %). The isolate exhibited relatively low levels of DNA-DNA relatedness with respect to D. soli KCTC 22481T (28.2±3.6 %). The DNA G+C content was 49.1 mol%. The unique respiratory quinone was MK-7 and the major polar lipids were phosphatidylethanolamine, five unidentified lipids, four aminolipids, two unidentified phospholipids and one glycophospholipid. The predominant cellular fatty acids (>5 % of total) were summed feature 3 (C16 : 1ω7c and/or iso-C15 : 0 2-OH; 44.3 %), iso-C15 : 0 (15.7 %), C16 : 1ω5c (9.6 %), iso-C17 : 0 3-OH (9.3 %) and C16 : 0 (5.6 %). Moreover, physiological and biochemical characteristics distinguished strain T17T from its related species, including temperature and pH ranges for growth, being positive for acetate hydrolysis, and being negative for acid produced from melibiose and rhamnose. The genotypic, chemotaxonomic and phenotypic data revealed that strain T17T represents a novel species of the genus Dyadobacter, for which the name Dyadobacter luticola sp. nov. is proposed. The type strain is T17T (=KCTC 52981T=CCTCC AB 2017091T).

authors

Song Z,Song Y,Yu Y,Choi L,Wang G,Li M

doi

10.1099/ijsem.0.003178

subject

Has Abstract

pub_date

2019-02-01 00:00:00

pages

465-469

issue

2

eissn

1466-5026

issn

1466-5034

journal_volume

69

pub_type

杂志文章
  • Olivibacter soli sp. nov., Olivibacter ginsengisoli sp. nov. and Olivibacter terrae sp. nov., from soil of a ginseng field and compost in South Korea.

    abstract::Three novel strains, designated Gsoil 034T, Gsoil 060T and Jip13T, isolated from soil from a ginseng field and compost in South Korea, were characterized using a polyphasic approach to clarify their taxonomic positions. These isolates were found to be Gram-negative, aerobic and heterotrophic, non-spore-forming, non-mo...

    journal_title:International journal of systematic and evolutionary microbiology

    pub_type: 杂志文章

    doi:10.1099/ijs.0.65299-0

    authors: Wang L,Ten LN,Lee HG,Im WT,Lee ST

    更新日期:2008-05-01 00:00:00

  • Shewanella submarina sp. nov., a gammaproteobacterium isolated from marine water.

    abstract::A curved-rod-shaped bacterium was isolated from a marine (100 m depth) water sample collected from Bay of Bengal, Visakhapatnam, India. Strain NIO-S14T, was Gram-stain-negative, motile and pale-yellow. NIO-S14T was able to grow aerobically and anaerobically and could utilize a number of organic substrates. Major fatty...

    journal_title:International journal of systematic and evolutionary microbiology

    pub_type: 杂志文章

    doi:10.1099/ijsem.0.003059

    authors: Sudha Rani P,Saini MK,Pinnaka AK,Sampath Kumar G,Kumar S,Vemuluri VR,Tanuku NRS

    更新日期:2019-01-01 00:00:00

  • Rhodoblastus sphagnicola sp. nov., a novel acidophilic purple non-sulfur bacterium from Sphagnum peat bog.

    abstract::An isolate of purple non-sulfur bacteria was obtained from an acidic Sphagnum peat bog and designated strain RS(T). The colour of cell suspensions of this bacterium growing in the light under anaerobic conditions is purplish red. Cells of strain RS(T) are rod-shaped, 0.8-1.0 microm wide and 2.0-6.0 microm long, motile...

    journal_title:International journal of systematic and evolutionary microbiology

    pub_type: 杂志文章

    doi:10.1099/ijs.0.63962-0

    authors: Kulichevskaya IS,Guzev VS,Gorlenko VM,Liesack W,Dedysh SN

    更新日期:2006-06-01 00:00:00

  • Hahella antarctica sp. nov., isolated from Antarctic seawater.

    abstract::A Gram-negative, psychrotolerant, chemoheterotrophic, aerobic, cream-coloured bacterium, designated IMCC3113(T), was isolated from coastal seawater from the Antarctic. On the basis of 16S rRNA gene sequence similarity analyses, the strain was most closely related to the type strains of Hahella chejuensis (93.0 %) and ...

    journal_title:International journal of systematic and evolutionary microbiology

    pub_type: 杂志文章

    doi:10.1099/ijs.0.65389-0

    authors: Lee K,Lee HK,Cho JC

    更新日期:2008-02-01 00:00:00

  • Variovorax dokdonensis sp. nov., isolated from soil.

    abstract::A Gram-negative, motile and oval- or rod-shaped bacterial strain, DS-43T, was isolated from soil from Dokdo, Korea, and its taxonomic position was investigated by using a polyphasic approach. The strain grew optimally at pH 7.0-8.0 and at 30 degrees C in the presence of 0.5 % (w/v) NaCl. Strain DS-43T had Q-8 as the p...

    journal_title:International journal of systematic and evolutionary microbiology

    pub_type: 杂志文章

    doi:10.1099/ijs.0.64070-0

    authors: Yoon JH,Kang SJ,Oh TK

    更新日期:2006-04-01 00:00:00

  • Kuraishia mediterranea sp. nov., a methanol-assimilating yeast species from olive oil and its sediment.

    abstract::Six yeast strains isolated from olive oil sediments and spoiled olive oils originating from Slovenia and Portugal, respectively, proved to represent an undescribed yeast species based on DNA sequence comparisons. The analysis of gene sequences for internal transcribed spacer regions and the large subunit rRNA gene D1/...

    journal_title:International journal of systematic and evolutionary microbiology

    pub_type: 杂志文章

    doi:10.1099/ijsem.0.002392

    authors: Čadež N,Dlauchy D,Tóbiás A,Péter G

    更新日期:2017-11-01 00:00:00

  • Aciditerrimonas ferrireducens gen. nov., sp. nov., an iron-reducing thermoacidophilic actinobacterium isolated from a solfataric field.

    abstract::An iron-reducing, moderately thermophilic, acidophilic actinobacterium, strain IC-180(T), isolated from a solfataric field in Hakone, Japan, was subjected to polyphasic taxonomic analysis. Strain IC-180(T) was a motile, short rod-shaped, Gram-positive bacterium that was able to grow at temperatures of 35-58 °C (optima...

    journal_title:International journal of systematic and evolutionary microbiology

    pub_type: 杂志文章

    doi:10.1099/ijs.0.023044-0

    authors: Itoh T,Yamanoi K,Kudo T,Ohkuma M,Takashina T

    更新日期:2011-06-01 00:00:00

  • Pontibacter amylolyticus sp. nov., isolated from a deep-sea sediment hydrothermal vent field.

    abstract::A Gram-stain-negative, short rod-shaped bacterium, designated 9-2T, was isolated from a sediment sample collected from a hydrothermal vent field on the south-west Indian Ridge. It formed red colonies, produced carotenoid-like pigments and did not produce bacteriochlorophyll a. Strain 9-2T was positive for hydrolysis o...

    journal_title:International journal of systematic and evolutionary microbiology

    pub_type: 杂志文章

    doi:10.1099/ijsem.0.000944

    authors: Wu YH,Zhou P,Jian SL,Liu ZS,Wang CS,Oren A,Xu XW

    更新日期:2016-04-01 00:00:00

  • Streptimonospora salina gen. nov., sp. nov., a new member of the family Nocardiopsaceae.

    abstract::Actinomycete strain YIM 90002T (= CCTCC 99003T = CCRC 16284T) was isolated from a soil sample collected from a salt lake in the west of China. The aerial mycelium of this organism is well developed but not fragmented and, at maturity, forms short chains of spores. Spores in short chains are oval- to rod-shaped and hav...

    journal_title:International journal of systematic and evolutionary microbiology

    pub_type: 杂志文章

    doi:10.1099/00207713-51-2-357

    authors: Cui XL,Mao PH,Zeng M,Li WJ,Zhang LP,Xu LH,Jiang CL

    更新日期:2001-03-01 00:00:00

  • The genus Listonella MacDonell and Colwell 1986 is a later heterotypic synonym of the genus Vibrio Pacini 1854 (Approved Lists 1980)--a taxonomic opinion.

    abstract::We analysed the taxonomic position of the genus Listonella based on phylogenetic, genomic and phenotypic data. The species of the genus Listonella were nested within the genus Vibrio according to the 16S rRNA gene sequence-based phylogenetic tree. The closest neighbour of Vibrio (Listonella) anguillarum strains LMG 44...

    journal_title:International journal of systematic and evolutionary microbiology

    pub_type: 杂志文章

    doi:10.1099/ijs.0.030015-0

    authors: Thompson FL,Thompson CC,Dias GM,Naka H,Dubay C,Crosa JH

    更新日期:2011-12-01 00:00:00

  • Altererythrobacter salegens sp. nov., a slightly halophilic bacterium isolated from surface sediment.

    abstract::A Gram-negative, rod-shaped and slightly halophilic bacterium, strain XY-R17T, was isolated from the surface sediment of Mai Po Inner Deep Bay Ramsar Site birdwatch in Hong Kong. The 16S rRNA gene sequence of strain XY-R17T exhibited 96.5 % similarity to that of the type strain of Altererythrobacter atlanticus. Optima...

    journal_title:International journal of systematic and evolutionary microbiology

    pub_type: 杂志文章

    doi:10.1099/ijsem.0.001708

    authors: Liang X,Lin H,Wang K,Liao Y,Lai Q,Xu Y,Wang C

    更新日期:2017-04-01 00:00:00

  • Roseithermus sacchariphilus gen. nov., sp. nov. and proposal of Salisaetaceae fam. nov., representing new family in the order Rhodothermales.

    abstract::A novel bacterium with cells that were pinkish-cream-coloured, aerobic, rod-shaped, 0.62-1.00 µm wide and 2.3-3.3 µm long, designated as strain MEBiC09517T, was isolated from Buksung-Po, a small port in Incheon, Republic of Korea. Strain MEBiC09517T had low 16S rRNA gene sequence similarity to validly reported strains...

    journal_title:International journal of systematic and evolutionary microbiology

    pub_type: 杂志文章

    doi:10.1099/ijsem.0.003293

    authors: Park MJ,Oh JH,Yang SH,Kwon KK

    更新日期:2019-04-01 00:00:00

  • Photobacterium aquimaris sp. nov., a luminous marine bacterium isolated from seawater.

    abstract::Two luminous marine bacteria, strains LC2-065(T) and LC2-102, were isolated from seawater at Sagami Bay in Japan. These bacteria were Gram-negative, oxidase-negative, catalase-positive, motile and coccoid-rods. 16S rRNA gene sequence analysis and multilocus sequence analysis (MLSA) using six loci (ftsZ, gapA, gyrB, mr...

    journal_title:International journal of systematic and evolutionary microbiology

    pub_type: 杂志文章

    doi:10.1099/ijs.0.004309-0

    authors: Yoshizawa S,Wada M,Kita-Tsukamoto K,Yokota A,Kogure K

    更新日期:2009-06-01 00:00:00

  • Thermoanaerobacter subterraneus sp. nov., a novel thermophile isolated from oilfield water.

    abstract::A new thermophilic, anaerobic glucose-fermenting, Gram-positive, rod-shaped bacterium, designated strain SEBR 7858T, was isolated from an oilfield water sample. Under optimal conditions on a glucose-containing medium (3% NaCl, 65 degrees C and pH 7.5), the generation time was 2.5 h. No growth occurred at 35 or 80 degr...

    journal_title:International journal of systematic and evolutionary microbiology

    pub_type: 杂志文章

    doi:10.1099/00207713-50-6-2141

    authors: Fardeau ML,Magot M,Patel BK,Thomas P,Garcia JL,Ollivier B

    更新日期:2000-11-01 00:00:00

  • Phyllobacterium sophorae sp. nov., a symbiotic bacterium isolated from root nodules of Sophora flavescens.

    abstract::Two novel Gram-stain-negative strains (CCBAU 03422(T) and CCBAU 03415) isolated from root nodules of Sophora flavescens were classified phylogenetically into the genus Phyllobacterium based on the comparative analysis of 16S rRNA and atpD genes. They showed 99.8 % rRNA gene sequence similarities to Phyllobacterium bra...

    journal_title:International journal of systematic and evolutionary microbiology

    pub_type: 杂志文章

    doi:10.1099/ijs.0.067017-0

    authors: Jiao YS,Yan H,Ji ZJ,Liu YH,Sui XH,Zhang XX,Wang ET,Chen WX,Chen WF

    更新日期:2015-02-01 00:00:00

  • Paenibacillus chinjuensis sp. nov., a novel exopolysaccharide-producing bacterium.

    abstract::A novel exopolysaccharide-producing bacterium (WN9T) was isolated from Chinju, Korea, and was identified as a member of the genus Paenibacillus on the basis of phenotypic characteristics and phylogenetic inference based on 16S rDNA sequence. This organism is a facultatively anaerobic, endospore-forming rod. The diamin...

    journal_title:International journal of systematic and evolutionary microbiology

    pub_type: 杂志文章

    doi:10.1099/00207713-52-2-415

    authors: Yoon JH,Seo WT,Shin YK,Kho YH,Kang KH,Park YH

    更新日期:2002-03-01 00:00:00

  • Achromobacter insolitus sp. nov. and Achromobacter spanius sp. nov., from human clinical samples.

    abstract::A polyphasic taxonomic study (employing whole-cell protein and fatty acid analyses, 16S rDNA sequencing, DNA-DNA hybridization, determination of DNA G+C content, antibiotic susceptibility testing and extensive phenotypic characterization) was performed on 10 isolates that appeared to be related to Alcaligenes faecalis...

    journal_title:International journal of systematic and evolutionary microbiology

    pub_type: 杂志文章

    doi:10.1099/ijs.0.02698-0

    authors: Coenye T,Vancanneyt M,Falsen E,Swings J,Vandamme P

    更新日期:2003-11-01 00:00:00

  • Neisseria dumasiana sp. nov. from human sputum and a dog's mouth.

    abstract::Three independent isolates of Gram-reaction-negative cocci collected from two New York State patients and a dog's mouth in California were subjected to a polyphasic analysis. The 16S rRNA gene sequence similarity among these isolates is 99.66 to 99.86 %. The closest species with a validly published name is Neisseria z...

    journal_title:International journal of systematic and evolutionary microbiology

    pub_type: 杂志文章

    doi:10.1099/ijsem.0.002148

    authors: Wroblewski D,Cole J,McGinnis J,Perez M,Wilson H,Mingle LA,Musser KA,Wolfgang WJ

    更新日期:2017-11-01 00:00:00

  • 'Candidatus Phytoplasma cirsii', a novel taxon from creeping thistle [Cirsium arvense (L.) Scop].

    abstract::Creeping thistle [Cirsium arvense (L.) Scop.] and dahlia (Dahlia sp.) plants showing typical symptoms of phytoplasma infection including yellowing, stunting, inflorescence and proliferation, were sampled; the presence of phytoplasma was confirmed by standard PCR using universal primers. RFLP analysis allowed classific...

    journal_title:International journal of systematic and evolutionary microbiology

    pub_type: 杂志文章

    doi:10.1099/ijsem.0.000937

    authors: Šafárˇová D,Zemánek T,Válová P,Navrátil M

    更新日期:2016-04-01 00:00:00

  • Aureimonas glaciei sp. nov., isolated from an ice core.

    abstract::A bacterial strain, B5-2T, was isolated from an ice core drilled from Muztagh Glacier, China. Strain B5-2T was a Gram-stain-negative, short rod-shaped, motile by polar flagella, aerobic bacterium. The major fatty acids of strain B5-2T were summed feature 8 (C18 : 1ω7c and/or C18 : 1ω6c) and iso-C13 : 0. The G+C conten...

    journal_title:International journal of systematic and evolutionary microbiology

    pub_type: 杂志文章

    doi:10.1099/ijsem.0.001661

    authors: Guo B,Liu Y,Gu Z,Shen L,Liu K,Xing T,Wang N,Liu H,Zhou Y,Li J

    更新日期:2017-02-01 00:00:00

  • Halopiger thermotolerans sp. nov., a thermo-tolerant haloarchaeon isolated from commercial salt.

    abstract::Three thermo-tolerant halophilic archaeal strains, SR-441T, SR-412 and SR-188, were isolated from commercial salt samples. Cells were non-motile pleomorphic rod-shaped, and stained Gram-negative. Colonies were pink-pigmented. The three strains were able to grow with 1.7-4.6 M NaCl (optimum, 2.5 M), at pH 6.5-9.0 (opti...

    journal_title:International journal of systematic and evolutionary microbiology

    pub_type: 杂志文章

    doi:10.1099/ijsem.0.001455

    authors: Minegishi H,Shimogaki R,Enomoto S,Echigo A,Kondo Y,Nagaoka S,Shimane Y,Kamekura M,Itoh T,Ohkuma M,Nunoura T,Takai K,Usami R

    更新日期:2016-12-01 00:00:00

  • Ornithinibacillus halophilus sp. nov., a moderately halophilic, Gram-stain-positive, endospore-forming bacterium from a hypersaline lake.

    abstract::A novel Gram-stain-positive, moderately halophilic bacterium, designated strain G8B(T), was isolated from water of the hypersaline lake Aran-Bidgol in Iran and characterized taxonomically using a polyphasic approach. Cells of strain G8B(T) were rod-shaped, motile and produced oval endospores at a terminal position in ...

    journal_title:International journal of systematic and evolutionary microbiology

    pub_type: 杂志文章

    doi:10.1099/ijs.0.041350-0

    authors: Bagheri M,Amoozegar MA,Schumann P,Didari M,Mehrshad M,Spröer C,Sánchez-Porro C,Ventosa A

    更新日期:2013-03-01 00:00:00

  • Paraflavitalea devenefica sp. nov., isolated from urban soil.

    abstract::A Gram-stain-negative, rod-shaped, mesophilic, milky white-pigmented, aerobic, non-spore-forming and non-flagellated bacterium, designated strain X16T, was isolated from urban soil of Zibo, Shandong, China. According to 16S rRNA gene sequence analysis, the isolate showed highest similarities with Paraflavitalea soli 5...

    journal_title:International journal of systematic and evolutionary microbiology

    pub_type: 杂志文章

    doi:10.1099/ijsem.0.004587

    authors: Hou X,Liu H,Shang Y,Mao S,Li S,Sang F,Deng H,Wang L,Kong L,Zhang C,Ding Z,Gao Y,Wei S,Chen Z

    更新日期:2021-01-01 00:00:00

  • Rejection of the name Borreliella and all proposed species comb. nov. placed therein.

    abstract::Rejection (nomen rejiciendum) of the name Borreliella and all new combinations therein is being requested on grounds of risk to human health and patient safety (Principle 1, subprinciple 2 and Rule 56a) and violation to aim for stability of names, to avoid useless creation of names (Principle 1, subprinciple 1 and 3) ...

    journal_title:International journal of systematic and evolutionary microbiology

    pub_type: 杂志文章

    doi:10.1099/ijsem.0.004149

    authors: Margos G,Castillo-Ramirez S,Cutler S,Dessau RB,Eikeland R,Estrada-Peña A,Gofton A,Graña-Miraglia L,Hunfeld KP,Krause A,Lienhard R,Lindgren PE,Oskam C,Rudolf I,Schwartz I,Sing A,Stevenson B,Wormser GP,Fingerle V

    更新日期:2020-05-01 00:00:00

  • Campylobacter ornithocola sp. nov., a novel member of the Campylobacter lari group isolated from wild bird faecal samples.

    abstract::During a study on the prevalence and diversity of campylobacteria in wild birds faecal samples from the city of Valdivia (southern Chile) 17 Gram-stain-negative, curved-rod-shaped isolates, were initially identified as Campylobacter lari by PCR-RFLP. Further identification by 16S rRNA sequence analysis revealed that t...

    journal_title:International journal of systematic and evolutionary microbiology

    pub_type: 杂志文章

    doi:10.1099/ijsem.0.001822

    authors: Cáceres A,Muñoz I,Iraola G,Díaz-Viraqué F,Collado L

    更新日期:2017-06-01 00:00:00

  • Kordiimonas pumila sp. nov., isolated from coastal sediment.

    abstract::A novel Gram-stain-negative, translucent-white, aerobic, motile and rod-shaped strain, designated N18T, was isolated from a coastal sediment sample collected in Zhoushan, Zhejiang Province, China. 16S rRNA gene similarity analysis revealed that strain N18T demonstrated highest similarity to the genus Kordiimonas(95.3-...

    journal_title:International journal of systematic and evolutionary microbiology

    pub_type: 杂志文章

    doi:10.1099/ijsem.0.002740

    authors: Ju Z,Zhang R,Hou XJ,Han SB,Li Y,Sun C,Wu M,Xu L

    更新日期:2018-05-01 00:00:00

  • Paenalcaligenes hominis gen. nov., sp. nov., a new member of the family Alcaligenaceae.

    abstract::A beige-pigmented bacterium (strain CCUG 53761A(T)) was isolated from human blood from an 85-year-old man in Göteborg, Sweden. Comparative analysis of 16S rRNA gene sequences showed that this bacterium displayed <95 % similarity to all described species of the genera of the family Alcaligenaceae. It grouped within the...

    journal_title:International journal of systematic and evolutionary microbiology

    pub_type: 杂志文章

    doi:10.1099/ijs.0.016576-0

    authors: Kämpfer P,Falsen E,Langer S,Lodders N,Busse HJ

    更新日期:2010-07-01 00:00:00

  • Haliea mediterranea sp. nov., a marine gammaproteobacterium.

    abstract::Strain 7SM29T, an aerobic marine gammaproteobacterium isolated from seawater from Castellón, Spain, was characterized by classical phenotyping, chemotaxonomy and 16S rRNA gene sequence analysis. Strain 7SM29T was found to be closely related to strains in the genus Haliea and to Congregibacter litoralis KT71T, with whi...

    journal_title:International journal of systematic and evolutionary microbiology

    pub_type: 杂志文章

    doi:10.1099/ijs.0.017061-0

    authors: Lucena T,Pascual J,Garay E,Arahal DR,Macián MC,Pujalte MJ

    更新日期:2010-08-01 00:00:00

  • The phylogenetic position of enteromonads: a challenge for the present models of diplomonad evolution.

    abstract::Unikaryotic enteromonads and diplokaryotic diplomonads have been regarded as closely related protozoan groups. It has been proposed that diplomonads originated within enteromonads in a single event of karyomastigont duplication. This paper presents the first study to address these questions using molecular phylogeneti...

    journal_title:International journal of systematic and evolutionary microbiology

    pub_type: 杂志文章

    doi:10.1099/ijs.0.63542-0

    authors: Kolisko M,Cepicka I,Hampl V,Kulda J,Flegr J

    更新日期:2005-07-01 00:00:00

  • Mesorhizobium wenxiniae sp. nov., isolated from chickpea (Cicer arietinum L.) in China.

    abstract::Three chickpea rhizobial strains (WYCCWR 10195T=S1-3-7, WYCCWR 10198=S1-4-3 and WYCCWR 10200=S1-5-1) isolated from Northwest China formed a group affiliated to Mesorhizobium based on 16S rRNA gene sequence comparison. To clarify their species status, multilocus sequence analysis and average nucleotide identity (ANI) v...

    journal_title:International journal of systematic and evolutionary microbiology

    pub_type: 杂志文章

    doi:10.1099/ijsem.0.002770

    authors: Zhang J,Guo C,Chen W,de Lajudie P,Zhang Z,Shang Y,Wang ET

    更新日期:2018-06-01 00:00:00