Drug Target Interplay: A Network-based Analysis of Human Diseases and the Drug Targets.

Abstract:

:Screening and identifying a disease-specific novel drug target is the first step towards a rational drug designing approach. Due to the advent of high throughput data generation techniques, the protein search space has now exceeded 24,500 human protein coding genes, which encodes approximately 1804proteins. This work aims at mining out the relationship between target proteins, drugs, and diseases genes through a network-based systems biology approach. A network of all FDA approved drugs, along with their targets were utilized to construct the proposed Drug Target (DT) network. Further, the experimental drugs were mapped into the DT network to infer the functional relationship by utilizing the respective network attributes. Similar to the DT network, a network of disease genes was created through OMIM Gene Map and Morbid Map, to link the binary associations of disorder-disease genes. In the proposed model of Human Interactome Network, shortest path length between the target protein and disease gene was used to infer the correlation between 'Drug Targets' and 'Disease-Gene'. This network-based study will help researchers to analyze, infer and identify disease-specific novel drug targets through harnessing the graph theory based network attributes.

journal_name

Curr Top Med Chem

authors

Jain B,Raj U,Varadwaj PK

doi

10.2174/1568026618666180719160922

subject

Has Abstract

pub_date

2018-01-01 00:00:00

pages

1053-1061

issue

13

eissn

1568-0266

issn

1873-4294

pii

CTMC-EPUB-91833

journal_volume

18

pub_type

杂志文章,评审
  • Ethnobotany and natural products: the search for new molecules, new treatments of old diseases or a better understanding of indigenous cultures?

    abstract::Results of various projects on Mexican Indian ethnobotany and some of the subsequent pharmacological and phytochemical studies are summarised focusing both on chemical-pharmacological as well as anthropological (ethnopharmacological) aspects of our research. We have identified taste and smell properties of medicinal (...

    journal_title:Current topics in medicinal chemistry

    pub_type: 杂志文章,评审

    doi:10.2174/1568026033392570

    authors: Heinrich M

    更新日期:2003-01-01 00:00:00

  • Design, synthesis and antimicrobial evaluation of novel 1,3-oxazolidin-2- one derivatives.

    abstract::A series of novel derivatives of 1,3-oxazolidin-2-one 12a-12n has been synthesized starting from 4-nitro-(L)- phenylalanine by involving five-step reaction sequence. All the compounds were screened for their in vitro antibacterial activity against four pathogenic bacterial strains namely, Staphylococcus aureus, Bacill...

    journal_title:Current topics in medicinal chemistry

    pub_type: 杂志文章

    doi:10.2174/15680266113139990132

    authors: Chandna N,Kapoor JK,Goyal V,Aggarwal NK,Kumari KM,Vijjulatha M

    更新日期:2013-08-01 00:00:00

  • Multi-Target Strategy and Experimental Studies of Traditional Chinese Medicine for Alzheimer's Disease Therapy.

    abstract::Alzheimer's disease (AD) is a multifactorial complex disease. The pathogenesis of AD is very complicated, and involves the β-amyloid (Aβ) cascade, tau hyperphosphorylation, neuroinflammation, oxidative stress, mitochondrial dysfunction, reduced levels of neurotrophic factors, and damage and loss of synapses as well as...

    journal_title:Current topics in medicinal chemistry

    pub_type: 杂志文章,评审

    doi:10.2174/1568026615666150813144003

    authors: Li L,Zhang L,Yang CC

    更新日期:2016-01-01 00:00:00

  • PEGylated lipid nanocapsules with improved drug encapsulation and controlled release properties.

    abstract::Drugs with poor lipid and water solubility are some of the most challenging to formulate in nanocarriers, typically resulting in low encapsulation efficiencies and uncontrolled release profiles. PEGylated nanocapsules (PEG-NC) are known for their amenability to diverse modifications that allow the formation of domains...

    journal_title:Current topics in medicinal chemistry

    pub_type: 杂志文章

    doi:10.2174/1568026614666140329224716

    authors: Hervella P,Alonso-Sande M,Ledo F,Lucero ML,Alonso MJ,Garcia-Fuentes M

    更新日期:2014-01-01 00:00:00

  • A practical guide to sequencing genomes and transcriptomes.

    abstract::The emergence of new DNA sequencing technologies has allowed an exponential growth of genomic and transcriptomic data that ultimately yielded important results to several areas such as medicine and biology. This continuous technological progress presents several advantages and caveats that have to be considered for ea...

    journal_title:Current topics in medicinal chemistry

    pub_type: 杂志文章,评审

    doi:10.2174/1568026613666131204142353

    authors: Sanchez-Flores A,Abreu-Goodger C

    更新日期:2014-01-01 00:00:00

  • Lipoic Acid: its antioxidant and anti-inflammatory role and clinical applications.

    abstract::Lipoic acid (LA) is an antioxidant able to produce its effects in aqueous or lipophilic environments. Lipoate is the conjugate base of lipoic acid, and the most prevalent form of LA under physiological conditions. It presents a highly negative reduction potential, increases the expression of antioxidant enzymes and pa...

    journal_title:Current topics in medicinal chemistry

    pub_type: 杂志文章,评审

    doi:10.2174/1568026615666150114161358

    authors: Moura FA,de Andrade KQ,dos Santos JC,Goulart MO

    更新日期:2015-01-01 00:00:00

  • Terpyridines and their complexes with first row transition metal ions: cytotoxicity, nuclease activity and self-assembly of biomacromolecules.

    abstract::Transition metal complexes with terpyridine ligands have attracted a widespread interest with respect to biomedical applications: [(tpy)PtCl]Cl and [(tpy)RuCl(3)] are potent anti-tumor agents with activities comparable to those of cisplatin and carboplatin. The Ru(II) complexes feature a high potential as reactive pro...

    journal_title:Current topics in medicinal chemistry

    pub_type: 杂志文章,评审

    doi:10.2174/156802612799078919

    authors: Winter A,Gottschaldt M,Newkome GR,Schubert US

    更新日期:2012-01-01 00:00:00

  • Drug-likeness and increased hydrophobicity of commercially available compound libraries for drug screening.

    abstract::Most drug discovery programs today originate by selection of 'hit' molecules resulting from assays against large compound screening libraries. The chemical space in which these hits reside has implications for its biological activity in vivo and likelihood of progression to a drug candidate. We have created a database...

    journal_title:Current topics in medicinal chemistry

    pub_type: 杂志文章,评审

    doi:10.2174/156802612802652466

    authors: Zuegg J,Cooper MA

    更新日期:2012-01-01 00:00:00

  • Pulmonary drug delivery: a role for polymeric nanoparticles?

    abstract::Pulmonary drug delivery represents the best way of treating lung diseases, since it allows direct delivery of the drug to the site of action, with few systemic effects. Meanwhile, the lungs may be used as a portal of entry to the body, allowing systemic delivery of drugs via the airway surfaces into the bloodstream. I...

    journal_title:Current topics in medicinal chemistry

    pub_type: 杂志文章,评审

    doi:10.2174/1568026615666150108123256

    authors: d'Angelo I,Conte C,Miro A,Quaglia F,Ungaro F

    更新日期:2015-01-01 00:00:00

  • Database construction and peptide identification strategies for proteogenomic studies on sequenced genomes.

    abstract::Since the advent of high-throughput DNA sequencing technologies, the ever-increasing rate at which genomes have been published has generated new challenges notably at the level of genome annotation. Even if gene predictors and annotation softwares are more and more efficient, the ultimate validation is still in the ob...

    journal_title:Current topics in medicinal chemistry

    pub_type: 杂志文章,评审

    doi:10.2174/1568026613666131204105652

    authors: Hernandez C,Waridel P,Quadroni M

    更新日期:2014-01-01 00:00:00

  • Electromagnetic energy as a bridge between atomic and cellular levels in the genetics approach to cancer treatment.

    abstract::Literature on magnetic fields (MF) and gene expression, as well as on DNA damage, supports the hypothesis that electromagnetic energy may act at atomic level influencing genetic stability. According to quantum physics, MF act on the interconversion of singlet and triplet spin states, and therefore on genetic instabili...

    journal_title:Current topics in medicinal chemistry

    pub_type: 杂志文章,评审

    doi:10.2174/1568026615666150225104217

    authors: Tofani S

    更新日期:2015-01-01 00:00:00

  • Axin PPI Networks: New Interacting Proteins and New Targets?

    abstract::The scaffold protein Axin plays important roles in multiple signaling pathways through mediating the formation of different signaling complexes. Axin is best known for its role as a negative regulator in Wnt/β-catenin pathway. Aberrant activation of the key components in Wnt/β-catenin pathway including Axin has been l...

    journal_title:Current topics in medicinal chemistry

    pub_type: 杂志文章

    doi:10.2174/1568026616666160622220245

    authors: Song X,Cai W,Li L

    更新日期:2016-01-01 00:00:00

  • New Experimental and Computational Tools for Drug Discovery. - Part-VII.

    abstract:: ...

    journal_title:Current topics in medicinal chemistry

    pub_type: 社论

    doi:10.2174/156802661911190725100827

    authors: Scotti MT,Muratov EN,González-Díaz H

    更新日期:2019-01-01 00:00:00

  • Telomere-related Markers for Cancer.

    abstract::Telomeres are structurally nucleoprotein complexes at termini of linear chromosomes and essential to chromosome stability/integrity. In normal human cells, telomere length erodes progressively with each round of cell divisions, which serves as an important barrier to uncontrolled proliferation and malignant transforma...

    journal_title:Current topics in medicinal chemistry

    pub_type: 杂志文章,评审

    doi:10.2174/1568026620666200106145340

    authors: Yuan X,Dai M,Xu D

    更新日期:2020-01-01 00:00:00

  • Kv1.5 blockers for the treatment of atrial fibrillation: approaches to optimization of potency and selectivity and translation to in vivo pharmacology.

    abstract::The treatment and prevention of atrial fibrillation (AF) remains a significant unmet medical need. Existing therapies that maintain or restore sinus rhythm (rhythm control) have deleterious effects on the ventricle. A major goal for finding new AF therapies is the identification of repolarization mechanisms that are p...

    journal_title:Current topics in medicinal chemistry

    pub_type: 杂志文章,评审

    doi:10.2174/156802609788340832

    authors: Bilodeau MT,Trotter BW

    更新日期:2009-01-01 00:00:00

  • NMR Structures and Interactions of Antimicrobial Peptides with Lipopolysaccharide: Connecting Structures to Functions.

    abstract::Antimicrobial peptides (AMPs) establish the first line of host defense mechanism against invading microorganisms including bacteria, viruses, fungi and parasites. In recent years, emergence and spread of antibiotic resistance bacterial pathogens have dawn considerable interest in investigations of AMPs. The ability of...

    journal_title:Current topics in medicinal chemistry

    pub_type: 杂志文章,评审

    doi:10.2174/1568026615666150703121943

    authors: Bhattacharjya S

    更新日期:2016-01-01 00:00:00

  • Synthesis of Coumarin Derivatives as Versatile Scaffolds for GSK-3β Enzyme Inhibition.

    abstract:BACKGROUND:Glycogen synthase kinase-3 (GSK-3) is involved in the phosphorylation and inactivation of glycogen synthase. GSK-3 inhibitors have been associated with a variety of diseases, including Alzheimer´s disease (AD), diabetes type II, neurologic disorders, and cancer. The inhibition of GSK-3β isoforms is likely to...

    journal_title:Current topics in medicinal chemistry

    pub_type: 杂志文章

    doi:10.2174/1568026619666191019105349

    authors: Francisco CS,Javarini CL,de S Barcelos I,Morais PAB,de Paula H,de S Borges W,Neto ÁC,Lacerda V

    更新日期:2020-01-01 00:00:00

  • Protective effect of schizolobium parahyba flavonoids against snake venoms and isolated toxins.

    abstract::Four compounds (isoquercitrin, myricetin-3-O-glucoside, catechin and gallocatechin) were isolated from lyophilized aqueous extract of Schizolobium parahyba leaves by chromatography on Sephadex LH-20, followed by semipreparative HPLC using a C-18 column, and identified by 1H and 13C NMR. The compounds were then, tested...

    journal_title:Current topics in medicinal chemistry

    pub_type: 杂志文章

    doi:10.2174/156802611797633438

    authors: F Vale LH,Mendes MM,Fernandes RS,Costa TR,S Hage-Melim LI,A Sousa M,Hamaguchi A,Homsi-Brandeburgo MI,Franca SC,Silva CH,Pereira PS,Soares AM,Rodrigues VM

    更新日期:2011-01-01 00:00:00

  • Recent advances in the development of NR2B subtype-selective NMDA receptor antagonists.

    abstract::Over activation of the NMDA receptor complex has been implicated in a number of neurological conditions. The use of NMDA antagonists as therapeutic agents has been limited by serious cognitive and motor side effects. Significant efforts have been reported in the development of NR2B subtype-selective antagonists, which...

    journal_title:Current topics in medicinal chemistry

    pub_type: 杂志文章,评审

    doi:10.2174/156802606776894447

    authors: Layton ME,Kelly MJ 3rd,Rodzinak KJ

    更新日期:2006-01-01 00:00:00

  • Selective fluorination in drug design and development: an overview of biochemical rationales.

    abstract::Several strategies used in the rational design and synthesis of fluorinated compounds as potential therapeutic agents are reviewed. Applications of fluorine substitution in empirical SAR studies for lead development also are discussed, along with the implications with respect to fluorine target interactions that can b...

    journal_title:Current topics in medicinal chemistry

    pub_type: 杂志文章,评审

    doi:10.2174/156802606777951073

    authors: Kirk KL

    更新日期:2006-01-01 00:00:00

  • Target prediction of small molecules with information of key molecular interactions.

    abstract::The knowledge about to which biomolecules a small molecule binds is highly valuable in the drug development process. Although analytical methods to dissect ligand-binding proteome have made substantial progress in the past decades, it is generally too costly, if not infeasible, to know where a small molecule binds at ...

    journal_title:Current topics in medicinal chemistry

    pub_type: 杂志文章,评审

    doi:10.2174/156802612804547362

    authors: Lin JH

    更新日期:2012-01-01 00:00:00

  • Syringeable self-assembled cyclodextrin gels for drug delivery.

    abstract::The design of syringeable cyclodextrin (CD) gels is a developing area in the drug delivery and tissue engineering fields, since they offer the possibility of being administered with minimally invasive maneuvers to form depots that can remain for prolonged time in the implantation site. Two different supramolecular sys...

    journal_title:Current topics in medicinal chemistry

    pub_type: 杂志文章,评审

    doi:10.2174/1568026613666131219124308

    authors: Simões SM,Veiga F,Torres-Labandeira JJ,Ribeiro AC,Concheiro A,Alvarez-Lorenzo C

    更新日期:2014-01-01 00:00:00

  • 5-HT1A receptor, an old target for new therapeutic agents.

    abstract::The serotonin receptor subtype 5 HT(1A) was one of the first serotonin receptor subtypes pharmacologically characterized. Over the last twenty years the 5 HT(1A) receptor has been the object of intense research efforts as witnessed by the 5 HT(1A) acting drugs marketed as anxiolytics. In recent years, several new chem...

    journal_title:Current topics in medicinal chemistry

    pub_type: 杂志文章,评审

    doi:10.2174/156802608785161385

    authors: Lacivita E,Leopoldo M,Berardi F,Perrone R

    更新日期:2008-01-01 00:00:00

  • Gamma-secretase modulation and its promise for Alzheimer's disease: a rationale for drug discovery.

    abstract::The genetics of Alzheimer's disease (AD) implies that restoring non-pathological levels or ratios of different amyloid-beta (Abeta) peptide species in the brain could prevent the onset or delay the progression of this neurodegenerative disease. In particular, a selective reduction of the longer Abeta(1-42) peptide whi...

    journal_title:Current topics in medicinal chemistry

    pub_type: 杂志文章,评审

    doi:10.2174/156802608783334051

    authors: Beher D

    更新日期:2008-01-01 00:00:00

  • On the structural basis of the hypertensive properties of angiotensin II: a solved mystery or a controversial issue?

    abstract::Angiotensin II (AII), Asp1-Arg2-Val3-Tyr4-Ile5-His6-Pro7-Phe8, the primary active hormone of the Renin-Angiotensin-System (RAS), is a major vasoconstrictor implicated in the cause of hypertension. To unravel the question of the biologically active conformation(s) of this flexible peptide hormone and to better understa...

    journal_title:Current topics in medicinal chemistry

    pub_type: 杂志文章,评审

    doi:10.2174/1568026043451375

    authors: Tzakos AG,Gerothanassis IP,Troganis AN

    更新日期:2004-01-01 00:00:00

  • Update on Hsp90 inhibitors in clinical trial.

    abstract::Twenty-five years ago the first small molecule inhibitors of Hsp90 were identified. In the intervening years there has been dramatic progress in basic scientific understanding of the Hsp90 chaperone machinery and in the role of Hsp90 in malignancy. The first-in-class Hsp90 inhibitor 17-AAG entered into Phase I clinica...

    journal_title:Current topics in medicinal chemistry

    pub_type: 杂志文章,评审

    doi:10.2174/156802609789895728

    authors: Kim YS,Alarcon SV,Lee S,Lee MJ,Giaccone G,Neckers L,Trepel JB

    更新日期:2009-01-01 00:00:00

  • Bacterial ribosomal subunit assembly is an antibiotic target.

    abstract::A substantial number of antimicrobial agents target some activity of the bacterial ribosome for inhibition. Mechanistic studies and recent structural investigations of the ribosome have identified the binding sites and presumed mechanism of inhibitory activity for some compounds. A second target for many of these anti...

    journal_title:Current topics in medicinal chemistry

    pub_type: 杂志文章,评审

    doi:10.2174/1568026033452186

    authors: Champney WS

    更新日期:2003-01-01 00:00:00

  • Repurposed drugs for the treatment of schizophrenia and bipolar disorders.

    abstract::Characteristic symptoms of schizophrenia and bipolar disorders have been described and classified about a century ago. Each of these disorders may cause considerable impairment reflecting substantial alterations in cognition, perception, and mood. Though both disease concepts are well established, psychopharmacologica...

    journal_title:Current topics in medicinal chemistry

    pub_type: 杂志文章,评审

    doi:10.2174/15680266113136660165

    authors: Bumb JM,Enning F,Leweke FM

    更新日期:2013-01-01 00:00:00

  • Copeptin as a biomarker in cardiac disease.

    abstract::The introduction of biochemical biomarkers in the evaluation of patients with cardiovascular disease has led to practice-changing advancements in the way these patients are diagnosed and managed. Measurements of cardiac troponins or brain-type natriuretic peptide (BNP) and its precursor, N-terminal brain-type natriure...

    journal_title:Current topics in medicinal chemistry

    pub_type: 杂志文章,评审

    doi:10.2174/15680266113139990088

    authors: Giannopoulos G,Deftereos S,Panagopoulou V,Kossyvakis C,Kaoukis A,Bouras G,Pyrgakis V,Cleman MW

    更新日期:2013-01-01 00:00:00

  • RND efflux pumps: structural information translated into function and inhibition mechanisms.

    abstract::Efflux pumps of the Resistance Nodulation Division (RND) superfamily play a major role in the intrinsic and acquired resistance of Gram-negative pathogens to antibiotics. Moreover, they are largely responsible for multi-drug resistance (MDR) phenomena in these bacteria. The last decade has seen a sharp increase in the...

    journal_title:Current topics in medicinal chemistry

    pub_type: 杂志文章,评审

    doi:10.2174/15680266113136660220

    authors: Ruggerone P,Murakami S,Pos KM,Vargiu AV

    更新日期:2013-01-01 00:00:00