Design, characterization and in vivo functioning of a light-dependent histidine protein kinase in the yeast Saccharomyces cerevisiae.

Abstract:

:Helical alignment of the α-helical linker of the LOV (light-oxygen-voltage) domain of YtvA from Bacillus subtilis with the α-helical linker of the histidine-protein kinase domain of the Sln1 kinase of the phospho-relay system for osmoregulation of Saccharomyces cerevisiae has been used to construct a light-modulatable histidine protein kinase. In vitro, illumination with blue light inhibits both the ATP-dependent phosphorylation of this hybrid kinase, as well as the phosphoryl transfer to Ypd1, the phosphoryl transfer domain of the Sln1 system. The helical alignment was carried out with conservation of the complete Jα helix of YtvA, as well as of the phosphorylatable histidine residue of the Sln1 kinase, with conservation of the hepta-helical motive of coiled-coil structures, recognizable in the helices of the two separate, constituent, proteins. Introduction of the gene encoding this hybrid histidine protein kinase into cells of S. cerevisiae in which the endogenous Sln1 kinase had been deleted, allowed us to modulate gene expression in the yeast cells with (blue) light. This was first demonstrated via the light-induced alteration of the expression level of the mannosyl-transferase OCH1, via a translational-fusion approach. As expected, illumination decreased the expression level of OCH1; the steady state decrease in saturating levels of blue light was about 40%. To visualize the in vivo functionality of this light-dependent regulation system, we fused the green fluorescent protein (GFP) to another regulatory protein, HOG1, which is also responsive to the Sln1 kinase. HOG1 is phosphorylated by the MAP-kinase-kinase Pbs2, which in turn is under control of the Sln1 kinase, via the phosphoryl transfer domain Ypd1. Fluorescence microscopy was used to show that illumination of cells that contained the combination of the hybrid kinase and the HOG1::GFP fusion protein, led to a persistent increase in the level of nuclear accumulation of HOG1, in contrast to salt stress, which-as expected-showed the well-characterized transient response. The system described in this study will be valuable in future studies on the role of cytoplasmic diffusion in signal transduction in eukaryotic cells.

journal_name

AMB Express

journal_title

AMB Express

authors

Bury A,Hellingwerf KJ

doi

10.1186/s13568-018-0582-7

subject

Has Abstract

pub_date

2018-04-02 00:00:00

pages

53

issue

1

issn

2191-0855

pii

10.1186/s13568-018-0582-7

journal_volume

8

pub_type

杂志文章
  • Production of therapeutic proteins in the chloroplast of Chlamydomonas reinhardtii.

    abstract::Chloroplast transformation in the photosynthetic alga Chlamydomonas reinhardtii has been used to explore the potential to use it as an inexpensive and easily scalable system for the production of therapeutic recombinant proteins. Diverse proteins, such as bacterial and viral antigens, antibodies and, immunotoxins have...

    journal_title:AMB Express

    pub_type: 杂志文章

    doi:10.1186/s13568-014-0057-4

    authors: Almaraz-Delgado AL,Flores-Uribe J,Pérez-España VH,Salgado-Manjarrez E,Badillo-Corona JA

    更新日期:2014-08-13 00:00:00

  • Large-scale microcarrier culture of HEK293T cells and Vero cells in single-use bioreactors.

    abstract::Gene therapy and viral vaccine are becoming attractive therapeutic options for the treatment of different malignant diseases. Viral vector productions are often using static culture vessels and small volume stainless steel bioreactors (SSB). However, the yield of each vessel can be relatively low and multiple vessels ...

    journal_title:AMB Express

    pub_type: 杂志文章

    doi:10.1186/s13568-019-0794-5

    authors: Yang J,Guertin P,Jia G,Lv Z,Yang H,Ju D

    更新日期:2019-05-24 00:00:00

  • Biocatalytic activity of Monascus mycelia depending on physiology and high sensitivity to product concentration.

    abstract::Cell suspension culture using mycelia as whole cell biocatalyst for production of orange Monascus pigments has been carried out successfully in a nonionic surfactant micelle aqueous solution. Thus, selection of mycelia as whole cell biocatalyst and the corresponding enzymatic kinetics for production of orange Monascus...

    journal_title:AMB Express

    pub_type: 杂志文章

    doi:10.1186/s13568-017-0391-4

    authors: Lu F,Huang Y,Zhang X,Wang Z

    更新日期:2017-12-01 00:00:00

  • Influence of oxygen on NADH recycling and oxidative stress resistance systems in Lactobacillus panis PM1.

    abstract::Lactobacillus panis strain PM1 is an obligatory heterofermentative and aerotolerant microorganism that also produces 1,3-propanediol from glycerol. This study investigated the metabolic responses of L. panis PM1 to oxidative stress under aerobic conditions. Growth under aerobic culture triggered an early entrance of L...

    journal_title:AMB Express

    pub_type: 杂志文章

    doi:10.1186/2191-0855-3-10

    authors: Kang TS,Korber DR,Tanaka T

    更新日期:2013-01-31 00:00:00

  • High-level fed-batch fermentative expression of an engineered Staphylococcal protein A based ligand in E. coli: purification and characterization.

    abstract::The major platform for high level recombinant protein production is based on genetically modified microorganisms like Escherichia coli (E. coli) due to its short dividing time, ability to use inexpensive substrates and additionally, its genetics is comparatively simple, well characterized and can be manipulated easily...

    journal_title:AMB Express

    pub_type: 杂志文章

    doi:10.1186/s13568-015-0155-y

    authors: Kangwa M,Yelemane V,Polat AN,Gorrepati KD,Grasselli M,Fernández-Lahore M

    更新日期:2015-12-01 00:00:00

  • Purification and characterization of neutral protease from Aspergillus oryzae Y1 isolated from naturally fermented broad beans.

    abstract::The strain Y1, with a notably high production of neutral protease, was isolated from naturally fermented broad beans and subsequently identified as Aspergillus oryzae, through the analysis of its morphology characteristics and 18S rDNA sequence. Naturally fermented broad beans are the main raw material in Sichuan broa...

    journal_title:AMB Express

    pub_type: 杂志文章

    doi:10.1186/s13568-018-0611-6

    authors: Ao XL,Yu X,Wu DT,Li C,Zhang T,Liu SL,Chen SJ,He L,Zhou K,Zou LK

    更新日期:2018-06-12 00:00:00

  • Revelation of the ability of Burkholderia sp. USM (JCM 15050) PHA synthase to polymerize 4-hydroxybutyrate monomer.

    abstract:: The nutrition-versatility of Burkholderia sp. strain USM (JCM 15050) has initiated the studies on the use of this bacterium for polyhydroxyalkanoate (PHA) production. To date, the Burkholderia sp. has been reported to synthesize 3-hydroxybutyrate, 3-hydroxyvalerate and 3-hydroxy-4-methylvalerate monomers. In this stu...

    journal_title:AMB Express

    pub_type: 杂志文章

    doi:10.1186/2191-0855-2-41

    authors: Lau NS,Sudesh K

    更新日期:2012-08-09 00:00:00

  • Effects of different operating parameters on hydrogen production by Parageobacillus thermoglucosidasius DSM 6285.

    abstract::Hydrogen gas represents a promising alternative energy source to dwindling fossil fuel reserves, as it carries the highest energy per unit mass and its combustion results in the release of water vapour as only byproduct. The facultatively anaerobic thermophile Parageobacillus thermoglucosidasius is able to produce hyd...

    journal_title:AMB Express

    pub_type: 杂志文章

    doi:10.1186/s13568-019-0931-1

    authors: Mohr T,Aliyu H,Biebinger L,Gödert R,Hornberger A,Cowan D,de Maayer P,Neumann A

    更新日期:2019-12-23 00:00:00

  • Microbial community analysis in biocathode microbial fuel cells packed with different materials.

    abstract:: Biocathode MFCs using microorganisms as catalysts have important advantages in lowering cost and improving sustainability. Electrode materials and microbial synergy determines biocathode MFCs performance. In this study, four materials, granular activated carbon (GAC), granular semicoke (GS), granular graphite (GG) an...

    journal_title:AMB Express

    pub_type: 杂志文章

    doi:10.1186/2191-0855-2-21

    authors: Sun Y,Wei J,Liang P,Huang X

    更新日期:2012-03-29 00:00:00

  • Chemical profiling, biostatic and biocidal dynamics of Origanum vulgare L. essential oil.

    abstract::Origanum vulgare L. (Lamiaceae) is a widespread flavoring culinary and medicinal herb. The present study aimed at investigating the antimicrobial activity of Origanum vulgare (OV) essential oil (EO) through illustrating its biostatic, biocidal and the dynamics of the biocidal activity against 11 different microorganis...

    journal_title:AMB Express

    pub_type: 杂志文章

    doi:10.1186/s13568-019-0764-y

    authors: Fikry S,Khalil N,Salama O

    更新日期:2019-03-26 00:00:00

  • Effects of Piromyces sp. CN6 CGMCC 14449 on fermentation quality, nutrient composition and the in vitro degradation rate of whole crop maize silage.

    abstract::This study investigated the effects of the rumen fungus Piromyces sp. CN6 CGMCC 14449 as a silage additive on the fermentation quality, nutrient composition and in vitro digestibility of whole crop maize silage. Whole crop maize served as the silage material and was vacuum packed in polyethylene bags. Three ensiling t...

    journal_title:AMB Express

    pub_type: 杂志文章

    doi:10.1186/s13568-019-0846-x

    authors: Wang D,Zhao C,Liu S,Zhang T,Yao J,Cao Y

    更新日期:2019-07-29 00:00:00

  • Retraction Note to: Substrates specificity of tannase from Streptomyces sviceus and Lactobacillus plantarum.

    abstract::The Editor-in-Chief has retracted this article (Wang et al. 2018) because the authors do not have ownership of the data they report. An investigation by the Commonwealth Scientific and Industrial Research Organisation (CSIRO) has concluded that the data reported in this article are the sole property of the CSIRO. Ming...

    journal_title:AMB Express

    pub_type: 杂志文章,撤回出版物

    doi:10.1186/s13568-019-0778-5

    authors: Wang D,Liu Y,Lv D,Hu X,Zhong Q,Zhao Y,Wu M

    更新日期:2019-04-19 00:00:00

  • Probiotic strain Stenotrophomonas acidaminiphila BJ1 degrades and reduces chlorothalonil toxicity to soil enzymes, microbial communities and plant roots.

    abstract::Chlorothalonil, a non-systemic and broad-spectrum fungicide, is widely used to control the pathogens of agricultural plants. Although microbial degradation of chlorothalonil is known, we know little about the colonization and degradation capacity of these microbes in the natural and semi-natural soil environments. The...

    journal_title:AMB Express

    pub_type: 杂志文章

    doi:10.1186/s13568-017-0530-y

    authors: Zhang Q,Saleem M,Wang C

    更新日期:2017-12-23 00:00:00

  • Genetic algorithm with a crossover elitist preservation mechanism for protein-ligand docking.

    abstract::Protein-ligand docking plays an important role in computer-aided pharmaceutical development. Protein-ligand docking can be defined as a search algorithm with a scoring function, whose aim is to determine the conformation of the ligand and the receptor with the lowest energy. Hence, to improve an efficient algorithm ha...

    journal_title:AMB Express

    pub_type: 杂志文章

    doi:10.1186/s13568-017-0476-0

    authors: Guan B,Zhang C,Ning J

    更新日期:2017-09-13 00:00:00

  • Silver ion bioreduction in nanoparticles using Artemisia annua L. extract: characterization and application as antibacterial agents.

    abstract::The biological synthesis of metal nanoparticles using plant extracts with defined size and morphology is a simple, nontoxic and environmentally friendly method. The present study focused on the synthesis of silver nanoparticles (Ag NPs) by Artemisia annua L. extract as reducing and stabilising agent. The Ag NPs functi...

    journal_title:AMB Express

    pub_type: 杂志文章

    doi:10.1186/s13568-020-01002-w

    authors: Aghajanyan A,Gabrielyan L,Schubert R,Trchounian A

    更新日期:2020-04-07 00:00:00

  • The differences of bacterial communities in the tissues between healthy and diseased Yesso scallop (Patinopecten yessoensis).

    abstract::The tissues of marine invertebrates are colonized by species-rich microbial communities. The dysbiosis of host's microbiota is tightly associated with the invertebrate diseases. Yesso scallop (Patinopecten yessoensis), one of the most important maricultured scallops in northern China, has recently suffered massive sum...

    journal_title:AMB Express

    pub_type: 杂志文章

    doi:10.1186/s13568-019-0870-x

    authors: Yu Z,Liu C,Fu Q,Lu G,Han S,Wang L,Song L

    更新日期:2019-09-14 00:00:00

  • Isolation and identification of a novel protein elicitor from a Bacillus subtilis strain BU412.

    abstract::Here, we report a novel protein elicitor from Bacillus subtilis BU412 which could cause hypersensitive response (HR) and systemic acquired resistance (SAR) in tobacco. The purification was executed by ion-exchange and size exclusion chromatography. The target band on SDS-PAGE was analyzed by mass spectrometry, and the...

    journal_title:AMB Express

    pub_type: 杂志文章

    doi:10.1186/s13568-019-0822-5

    authors: Shen Y,Li J,Xiang J,Wang J,Yin K,Liu Q

    更新日期:2019-07-27 00:00:00

  • Heat shock drives genomic instability and phenotypic variations in yeast.

    abstract::High temperature causes ubiquitous environmental stress to microorganisms, but studies have not fully explained whether and to what extent heat shock would affect genome stability. Hence, this study explored heat-shock-induced genomic alterations in the yeast Saccharomyces cerevisiae. Using genetic screening systems a...

    journal_title:AMB Express

    pub_type: 杂志文章

    doi:10.1186/s13568-020-01091-7

    authors: Shen L,Wang YT,Tang XX,Zhang K,Wang PM,Sui Y,Zheng DQ

    更新日期:2020-08-17 00:00:00

  • Heat shock protein 70 (HmHsp70) from Hypsizygus marmoreus confers thermotolerance to tobacco.

    abstract::The 70-kD heat shock proteins (Hsp70s) have been proved to be important for stress tolerance and protein folding and unfolding in almost all organisms. However, the functions of Hsp70s in mushroom are not well understood. In the present study, a hsp70 gene from Hypsizygus marmoreus, hmhsp70, was cloned and transferred...

    journal_title:AMB Express

    pub_type: 杂志文章

    doi:10.1186/s13568-020-0947-6

    authors: Xu L,Gao J,Guo L,Yu H

    更新日期:2020-01-18 00:00:00

  • Petroleum degradation by Pseudomonas sp. ZS1 is impeded in the presence of antagonist Alcaligenes sp. CT10.

    abstract::Enhanced bioremediation is a favorable approach for petroleum pollutant cleanup, which depends on the growth of oil-eating microorganisms. In this study, we show that, by using the modified T-RFLP (mT-RFLP) methodology, one of the four major microbial populations derived from oil sludge has failed to propagate in MS m...

    journal_title:AMB Express

    pub_type: 杂志文章

    doi:10.1186/s13568-018-0620-5

    authors: Liang J,Cheng T,Huang Y,Liu J

    更新日期:2018-05-28 00:00:00

  • Glucose limited feed strategy leads to increased production of fusicocca-2,10(14)-diene by Saccharomyces cerevisiae.

    abstract::Fusicocca-2,10(14)-diene (FCdiene) is a diterpene which is interesting as a precursor of the anti-cancer drug fusicoccin A and therefore for pharmaceutical applications. Production of FCdiene using a genetically modified Saccharomyces cerevisiae has been previously demonstrated with batch cultivations with a product c...

    journal_title:AMB Express

    pub_type: 杂志文章

    doi:10.1186/s13568-018-0662-8

    authors: Halka LM,Nowacki C,Kleinschmidt A,Koenen K,Wichmann R

    更新日期:2018-08-22 00:00:00

  • Ammonium nitrate regulated the color characteristic changes of pigments in Monascus purpureus M9.

    abstract::Monascus pigments (MPs) with different color characteristics, produced by submerged fermentation of Monascus purpureus M9, have potential application in food industry. In the present study, the effects and regulatory mechanisms of ammonium nitrate (AN) on the color characteristics of MPs were investigated. The concent...

    journal_title:AMB Express

    pub_type: 杂志文章

    doi:10.1186/s13568-020-01165-6

    authors: Chen D,Wang Y,Chen M,Fan P,Li G,Wang C

    更新日期:2021-01-04 00:00:00

  • Synthesis of cyclophosphamide metabolites by a peroxygenase from Marasmius rotula for toxicological studies on human cancer cells.

    abstract::Cyclophosphamide (CPA) represents a widely used anti-cancer prodrug that is converted by liver cytochrome P450 (CYP) enzymes into the primary metabolite 4-hydroxycyclophosphamide (4-OH-CPA), followed by non-enzymatic generation of the bioactive metabolites phosphoramide mustard and acrolein. The use of human drug meta...

    journal_title:AMB Express

    pub_type: 杂志文章

    doi:10.1186/s13568-020-01064-w

    authors: Steinbrecht S,Kiebist J,König R,Thiessen M,Schmidtke KU,Kammerer S,Küpper JH,Scheibner K

    更新日期:2020-07-18 00:00:00

  • Self-assembly into virus-like particles of the recombinant capsid protein of porcine circovirus type 3 and its application on antibodies detection.

    abstract::PCV3 capsid protein (Cap) is an important antigen for diagnosis and vaccine development. To achieve high-level expression of recombinant PCV3 Cap in Escherichia coli (E. coli), the gene of wild-type entire Cap (wt-eCap) was amplified from clinical samples, and three optimized entire Cap (opti-eCap) and one optimized C...

    journal_title:AMB Express

    pub_type: 杂志文章

    doi:10.1186/s13568-019-0940-0

    authors: Wang Y,Wang G,Duan WT,Sun MX,Wang MH,Wang SH,Cai XH,Tu YB

    更新日期:2020-01-07 00:00:00

  • Improvement of efficiency of brown coal biosolubilization by novel recombinant Fusarium oxysporum laccase.

    abstract::Clean coal technologies (e.g. coal biosolubilization) are of essential value, especially in Europe, where coal is the national wealth and other energy sources like crude oil are not available. Fusarium oxysporum LOCK 1134, the strain isolated from brown coal, efficiently biosolubilizes lignite. The obtained liquefied ...

    journal_title:AMB Express

    pub_type: 杂志文章

    doi:10.1186/s13568-018-0669-1

    authors: Kwiatos N,Jędrzejczak-Krzepkowska M,Strzelecki B,Bielecki S

    更新日期:2018-08-22 00:00:00

  • Medium-chain-length polyhydroxyalkanoates synthesis by Pseudomonas putida KT2440 relA/spoT mutant: bioprocess characterization and transcriptome analysis.

    abstract::Pseudomonas putida KT2440 is a model bacteria used commonly for medium-chain-length polyhydroxyalkanoates (mcl-PHAs) production using various substrates. However, despite many studies conducted on P. putida KT2440 strain, the molecular mechanisms of leading to mcl-PHAs synthesis in reaction to environmental stimuli ar...

    journal_title:AMB Express

    pub_type: 杂志文章

    doi:10.1186/s13568-017-0396-z

    authors: Mozejko-Ciesielska J,Dabrowska D,Szalewska-Palasz A,Ciesielski S

    更新日期:2017-12-01 00:00:00

  • A lipophilic fluorescent LipidGreen1-based quantification method for high-throughput screening analysis of intracellular poly-3-hydroxybutyrate.

    abstract::Poly-3-hydroxybutyrate (PHB), the most abundant type of polyhydroxyalkanoates (PHA) is synthesized inside a variety of microorganisms as a primary candidate for industrial PHB production. Lipophilic dyes such as Nile red and BODIPY have been used to quantify intracellular PHB, but their uses have often been limited in...

    journal_title:AMB Express

    pub_type: 杂志文章

    doi:10.1186/s13568-015-0131-6

    authors: Choi JE,Na HY,Yang TH,Rhee SK,Song JK

    更新日期:2015-12-01 00:00:00

  • Adaptive response of Rhodococcus opacus PWD4 to salt and phenolic stress on the level of mycolic acids.

    abstract::Mycolata form a group of Gram-positive bacteria with unique cell envelope structures that are known for their high tolerance against antibiotics and both aromatic and aliphatic hydrocarbons. An important part of the unique surface structure of the mycolata is the presence of long chain α-alkyl-β-hydroxy fatty acids, t...

    journal_title:AMB Express

    pub_type: 杂志文章

    doi:10.1186/s13568-016-0241-9

    authors: de Carvalho CCCR,Fischer MA,Kirsten S,Würz B,Wick LY,Heipieper HJ

    更新日期:2016-12-01 00:00:00

  • Halogenated indoles eradicate bacterial persister cells and biofilms.

    abstract::The emergence of antibiotic resistance has necessitated new therapeutic approaches to combat recalcitrant bacterial infections. Persister cells, often found in biofilms, are metabolically dormant, and thus, are highly tolerant to all traditional antibiotics and represent a major drug resistance mechanism. In the prese...

    journal_title:AMB Express

    pub_type: 杂志文章

    doi:10.1186/s13568-016-0297-6

    authors: Lee JH,Kim YG,Gwon G,Wood TK,Lee J

    更新日期:2016-12-01 00:00:00

  • The two-component system CepRS regulates the cephamycin C biosynthesis in Streptomyces clavuligerus F613-1.

    abstract::During industrial fermentation, Streptomyces clavuligerus F613-1 simultaneously produces primary product clavulanic acid (CA) and cephamycin C. The cephamycin C biosynthetic gene cluster and pathway have been basically elucidated and the CcaR positive regulator was found to control the cephamycin genes expression. How...

    journal_title:AMB Express

    pub_type: 杂志文章

    doi:10.1186/s13568-019-0844-z

    authors: Fu J,Qin R,Zong G,Zhong C,Zhang P,Kang N,Qi X,Cao G

    更新日期:2019-07-27 00:00:00