Ramlibacter alkalitolerans sp. nov., alkali-tolerant bacterium isolated from soil of ginseng.

Abstract:

:A novel bacterial strain, designated CJ661T, was isolated from soil of ginseng in Anseong, South Korea. Cells of strain CJ661T were white-coloured, Gram-staining-negative, non-motile, aerobic and rod-shaped. Strain CJ661T grew optimally at 30 °C and pH 7.0. The analysis of 16S rRNA gene sequence of strain CJ661T showed that it belongs to the genus Ramlibacter within the family Comamonadaceae and was most closely related to Ramlibacter ginsenosidimutans KCTC 22276T (98.1 %), followed by Ramlibacter henchirensis DSM 14656T (97.1 %). DNA-DNA relatedness levels of strain CJ661T were 40.6 % to R. ginsenosidimutans KCTC 22276T and 25.0 % to R. henchirensis DSM 14656T. The major isoprenoid quinone was ubiquinone (Q-8). The predominant polar lipids were phosphatidylethanolamine, diphosphatidylglycerol and phosphatidylglycerol. The major cellular fatty acids of strain CJ661T were summed feature 3 (C16 : 1 ω6c and/or C16 : 1 ω7c), C16 : 0 and summed feature 8 (C18 : 1 ω7c and/or C18 : 1 ω6c). The G+C content of the genomic DNA was 65.4 mol%. On the basis polyphasic taxonomic data, strain CJ661T represents a novel species in the genus Ramlibacter, for which name Ramlibacter alkalitolerans sp. nov. is proposed; the type strain is CJ661T (=KACC 19305T=JCM 32081T).

authors

Lee DH,Cha CJ

doi

10.1099/ijsem.0.002342

subject

Has Abstract

pub_date

2017-11-01 00:00:00

pages

4619-4623

issue

11

eissn

1466-5026

issn

1466-5034

journal_volume

67

pub_type

杂志文章
  • Reclassification of Sphingobacterium antarcticum Shivaji et al. 1992 as Pedobacter antarcticus comb. nov. and Pedobacter piscium (Takeuchi and Yokota 1993) Steyn et al. 1998 as a later heterotypic synonym of Pedobacter antarcticus.

    abstract::The taxonomic position of Sphingobacterium antarcticum has been revised by means of 16S rRNA gene sequences, DNA-DNA hybridization, and phenotypic and chemotaxonomic characteristics. All data previously reported, as well as the results of the present phylogenetic analysis, support that Sphingobacterium antarcticum is ...

    journal_title:International journal of systematic and evolutionary microbiology

    pub_type: 杂志文章

    doi:10.1099/ijs.0.054965-0

    authors: Farfán M,Montes MJ,Marqués AM

    更新日期:2014-03-01 00:00:00

  • Sphaerisporangium rufum sp. nov., an endophytic actinomycete from roots of Oryza sativa L.

    abstract::An endophytic actinomycete, strain R10-82(T), isolated from surface-sterilized roots of rice (Oryza sativa L.) was studied using a polyphasic approach. Strain R10-82(T) produced branching substrate mycelia and developed spherical spore vesicles on aerial hyphae containing non-motile spores. The major cellular fatty ac...

    journal_title:International journal of systematic and evolutionary microbiology

    pub_type: 杂志文章

    doi:10.1099/ijs.0.057885-0

    authors: Mingma R,Duangmal K,Trakulnaleamsai S,Thamchaipenet A,Matsumoto A,Takahashi Y

    更新日期:2014-04-01 00:00:00

  • Methanosarcina subterranea sp. nov., a methanogenic archaeon isolated from a deep subsurface diatomaceous shale formation.

    abstract::A methanogenic archaeon, strain HC-2(T), was isolated from a deep diatomaceous shale formation. The strain grew on methanol, monomethylamine, dimethylamine, trimethylamine and dimethylsulphide, but not on acetate, H2/CO2, formate, 2-propanol, 2-butanol or cyclopentanol. Cells were Gram-stain-negative, non-motile, and ...

    journal_title:International journal of systematic and evolutionary microbiology

    pub_type: 杂志文章

    doi:10.1099/ijs.0.000072

    authors: Shimizu S,Ueno A,Naganuma T,Kaneko K

    更新日期:2015-04-01 00:00:00

  • Yania halotolerans gen. nov., sp. nov., a novel member of the suborder Micrococcineae from saline soil in China.

    abstract::A novel coccoid, halotolerant actinobacterium, designated strain YIM 70085(T), was isolated from a soil sample that was collected in Xinjiang Province, China, and characterized by using a polyphasic approach. Optimum growth temperature was 28 degrees C and growth occurred optimally in culture media that contained 10 %...

    journal_title:International journal of systematic and evolutionary microbiology

    pub_type: 杂志文章

    doi:10.1099/ijs.0.02875-0

    authors: Li WJ,Chen HH,Xu P,Zhang YQ,Schumann P,Tang SK,Xu LH,Jiang CL

    更新日期:2004-03-01 00:00:00

  • Deinococcus saudiensis sp. nov., isolated from desert.

    abstract::Two gamma- and UV-radiation-resistant, pink-coloured bacterial strains, designated YIM F302T and YIM F235, were isolated from the desert of Yanbu' al Bahr located in west of Saudi Arabia. Taxonomic positions of the two isolates were investigated by polyphasic taxonomic approaches. Cells of the two strains were Gram-st...

    journal_title:International journal of systematic and evolutionary microbiology

    pub_type: 杂志文章

    doi:10.1099/ijsem.0.001479

    authors: Hussain F,Khan IU,Habib N,Xian WD,Hozzein WN,Zhang ZD,Zhi XY,Li WJ

    更新日期:2016-12-01 00:00:00

  • Siphonobacter aquaeclarae gen. nov., sp. nov., a novel member of the family 'Flexibacteraceae', phylum Bacteroidetes.

    abstract::A Gram-negative bacterium, designated P2(T), was isolated from the biofilm developed on the inner surface of an ultrapure cooling water system in a Hungarian power plant and was characterized by a polyphasic approach. Phylogenetic analysis based on 16S rRNA gene sequences revealed that strain P2(T) was affiliated with...

    journal_title:International journal of systematic and evolutionary microbiology

    pub_type: 杂志文章

    doi:10.1099/ijs.0.019398-0

    authors: Táncsics A,Kéki Z,Márialigeti K,Schumann P,Tóth EM

    更新日期:2010-11-01 00:00:00

  • Roseomonas rhizosphaerae sp. nov., a triazophos-degrading bacterium isolated from soil.

    abstract::A novel aerobic, non-spore-forming, non-motile, catalase- and oxidase-positive, Gram-stain-negative, coccoid to short-rod-shaped bacterial strain, designated YW11(T), was isolated from soil under long-term application of triazophos. The strain was able to hydrolyse triazophos. Strain YW11(T) grew at 15-40 °C (optimum ...

    journal_title:International journal of systematic and evolutionary microbiology

    pub_type: 杂志文章

    doi:10.1099/ijs.0.057000-0

    authors: Chen Q,Sun LN,Zhang XX,He J,Kwon SW,Zhang J,Li SP,Gu JG

    更新日期:2014-04-01 00:00:00

  • Saccharopolyspora halophila sp. nov., a novel halophilic actinomycete isolated from a saline lake in China.

    abstract::A halophilic actinomycete strain, designated YIM 90500(T), was isolated from a saline lake in Xinjiang province, north-west China and subjected to a polyphasic taxonomic study. Good growth of the novel isolate occurred at 28-37 degrees C, pH 7-8 and with 10-15 % (w/v) NaCl; no growth occurred without any salts. Strain...

    journal_title:International journal of systematic and evolutionary microbiology

    pub_type: 杂志文章

    doi:10.1099/ijs.0.65705-0

    authors: Tang SK,Wang Y,Cai M,Zhi XY,Lou K,Xu LH,Jiang CL,Li WJ

    更新日期:2009-03-01 00:00:00

  • Aquiflexum aquatile sp. nov., isolated from lake water.

    abstract::A Gram-stain-negative, facultative anaerobic, red-coloured, rod-shaped, non-flagellated, non-motile and non-gliding bacterium, designated strain Z0201T, was isolated from lake water in Yunnan, China (26° 16' N, 99° 94' E). Cells of strain Z0201T were 0.2-0.4 µm wide and 1.4-2.5 µm long, catalase-positive and oxidase-n...

    journal_title:International journal of systematic and evolutionary microbiology

    pub_type: 杂志文章

    doi:10.1099/ijsem.0.003405

    authors: Wang XT,Wang XM,Zheng WS,Zhang XK,Du ZJ

    更新日期:2019-07-01 00:00:00

  • Ornithinimicrobium algicola sp. nov., a marine actinobacterium isolated from the green alga of the genus Ulva.

    abstract::A Gram-staining-positive, non-spore-forming actinobacterium, strain JC311T, isolated from marine green alga of the genus Ulva was studied to examine its taxonomic position. On the basis of the 16S rRNA gene sequence similarity studies, strain JC311T was shown represent a member of the genus Ornithinimicrobium and to b...

    journal_title:International journal of systematic and evolutionary microbiology

    pub_type: 杂志文章

    doi:10.1099/ijsem.0.000624

    authors: Ramaprasad EVV,Sasikala C,Ramana CV

    更新日期:2015-12-01 00:00:00

  • Hymenobacter glacieicola sp. nov., isolated from glacier ice.

    abstract::A Gram-stain-negative, rod-shaped, non-motile and red-pink-pigmented bacterial strain, designated B1909T, was isolated from an ice core drilled from Muztagh Glacier on the Tibetan Plateau, China. A phylogenetic tree based on 16S rRNA gene sequences showed that strain B1909T formed a lineage within the genus Hymenobact...

    journal_title:International journal of systematic and evolutionary microbiology

    pub_type: 杂志文章

    doi:10.1099/ijsem.0.001266

    authors: Liu K,Liu Y,Wang N,Gu Z,Shen L,Xu B,Zhou Y,Liu H,Jiao N

    更新日期:2016-10-01 00:00:00

  • Pleomorphochaeta naphthae sp. nov., a new anaerobic fermentative bacterium isolated from an oil field.

    abstract::A novel anaerobic fermentative bacterium, strain SEBR 4209T, was isolated from a water sample of a Congolese oil field. Strain SEBR 4209T is phylogenetically related to the genus Pleomorphochaeta, in the family Spirochaetaceae. Its closest relatives are Pleomorphochaeta caudata SEBR 4223T (94.5 % 16S rRNA gene sequenc...

    journal_title:International journal of systematic and evolutionary microbiology

    pub_type: 杂志文章

    doi:10.1099/ijsem.0.003048

    authors: Arroua B,Grimaud R,Hirschler-Réa A,Bouriat P,Magot M,Urios L,Ranchou-Peyruse A

    更新日期:2018-12-01 00:00:00

  • Gryllotalpicola protaetiae sp. nov., isolated from insect Protaetia brevitarsis seulensis, and emended descriptions of the genus Gryllotalpicola and the species Gryllotalpicola soli.

    abstract::A bacterial strain, designated 2DFW10M-5T, was isolated from gut of the larva of Protaetia brevitarsis seulensis collected in the Republic of Korea. Cells of the strain were Gram-stain-positive, non-motile and rod-shaped. The strain grew at the range of 10-37 °C (optimum, 28-30 °C) and pH 4.0-8.0 (optimum, pH 7.0) and...

    journal_title:International journal of systematic and evolutionary microbiology

    pub_type: 杂志文章

    doi:10.1099/ijsem.0.003767

    authors: Cho H,Heo J,Hamada M,Tamura T,Saitou S,Kim JS,Hong SB,Kim SJ,Kwon SW

    更新日期:2020-02-01 00:00:00

  • Prevotella aurantiaca sp. nov., isolated from the human oral cavity.

    abstract::Two anaerobic, pigmented, non-spore-forming, Gram-stain-negative, rod-shaped strains isolated from the human oral cavity, OMA31(T) and OMA130, were characterized by determining their phenotypic and biochemical features, cellular fatty acid profiles and phylogenetic positions based on 16S rRNA gene sequence analysis. 1...

    journal_title:International journal of systematic and evolutionary microbiology

    pub_type: 杂志文章

    doi:10.1099/ijs.0.012831-0

    authors: Sakamoto M,Suzuki N,Okamoto M

    更新日期:2010-03-01 00:00:00

  • Falsibacillus albus sp. nov., isolated from mangrove soil.

    abstract::A novel Gram-stain-positive, catalase- and oxidase-positive, endospore-forming bacterium, designated GY 10110T, was isolated from mangrove soil collected from Qinzhou, Guangxi province, China. Cells were aerobic, motile with peritrichous flagella and rod-shaped. The strain grew at 15-37 °C (optimum, 28 °C), at 0-3 %(w...

    journal_title:International journal of systematic and evolutionary microbiology

    pub_type: 杂志文章

    doi:10.1099/ijsem.0.003328

    authors: Shi SB,Liu C,Jiang MG,Li GD,Yang LF,Wu JF,Jiang LQ,Zhang K,Shen NK,Jiang CL,Jiang Y

    更新日期:2019-05-01 00:00:00

  • Pelagibacterium halotolerans gen. nov., sp. nov. and Pelagibacterium luteolum sp. nov., novel members of the family Hyphomicrobiaceae.

    abstract::Two Gram-negative, motile, aerobic bacterial strains, designated B2(T) and 1_C16_27(T), were respectively isolated from a seawater sample collected from the East China Sea and a semi-coke sample from north-eastern Estonia. Their genetic, phenotypic and chemotaxonomic properties were studied. The isolates were short ro...

    journal_title:International journal of systematic and evolutionary microbiology

    pub_type: 杂志文章

    doi:10.1099/ijs.0.023325-0

    authors: Xu XW,Huo YY,Wang CS,Oren A,Cui HL,Vedler E,Wu M

    更新日期:2011-08-01 00:00:00

  • Skermanella aerolata sp. nov., isolated from air, and emended description of the genus Skermanella.

    abstract::A light-pink-coloured bacterium, designated strain 5416T-32(T), was isolated from an air sample in Korea. Cells of the strain were strictly aerobic, Gram-negative, motile (single polar or subpolar flagellum) and rod-shaped. Optimal growth occurred at 25-30 degrees C and at pH 6.0-7.0. The major quinones were Q-10 and ...

    journal_title:International journal of systematic and evolutionary microbiology

    pub_type: 杂志文章

    doi:10.1099/ijs.0.64676-0

    authors: Weon HY,Kim BY,Hong SB,Joa JH,Nam SS,Lee KH,Kwon SW

    更新日期:2007-07-01 00:00:00

  • Olivibacter soli sp. nov., Olivibacter ginsengisoli sp. nov. and Olivibacter terrae sp. nov., from soil of a ginseng field and compost in South Korea.

    abstract::Three novel strains, designated Gsoil 034T, Gsoil 060T and Jip13T, isolated from soil from a ginseng field and compost in South Korea, were characterized using a polyphasic approach to clarify their taxonomic positions. These isolates were found to be Gram-negative, aerobic and heterotrophic, non-spore-forming, non-mo...

    journal_title:International journal of systematic and evolutionary microbiology

    pub_type: 杂志文章

    doi:10.1099/ijs.0.65299-0

    authors: Wang L,Ten LN,Lee HG,Im WT,Lee ST

    更新日期:2008-05-01 00:00:00

  • Thermococcoides shengliensis gen. nov., sp. nov., a new member of the order Thermotogales isolated from oil-production fluid.

    abstract::A novel thermophilic, strictly anaerobic, heterotrophic bacterium, strain 2SM-2(T), was isolated from the Shengli oilfield, China. This organism was identified as a member of the order Thermotogales on the basis of its 16S rRNA gene sequence and the presence of an external membranous toga-like structure. Cells stained...

    journal_title:International journal of systematic and evolutionary microbiology

    pub_type: 杂志文章

    doi:10.1099/ijs.0.013912-0

    authors: Feng Y,Cheng L,Zhang X,Li X,Deng Y,Zhang H

    更新日期:2010-04-01 00:00:00

  • Classification of Leptospira genomospecies 1, 3, 4 and 5 as Leptospira alstonii sp. nov., Leptospira vanthielii sp. nov., Leptospira terpstrae sp. nov. and Leptospira yanagawae sp. nov., respectively.

    abstract::The genus Leptospira currently comprises 16 named species. In addition, four unnamed hybridization groups were designated Leptospira genomospecies 1, 3, 4 and 5. These groups represent valid species-level taxa, but were not assigned names in the original description by Brenner et al. [Int J Syst Bacteriol 49, 839-858 ...

    journal_title:International journal of systematic and evolutionary microbiology

    pub_type: 杂志文章

    doi:10.1099/ijs.0.047324-0

    authors: Smythe L,Adler B,Hartskeerl RA,Galloway RL,Turenne CY,Levett PN,The International Committee On Systematics Of Prokaryotes Subcommittee On The Taxonomy Of

    更新日期:2013-05-01 00:00:00

  • Genome-based taxonomic classification within the family Thermoactinomycetaceae.

    abstract::The family Thermoactinomycetaceaecomprises 43 validly published species, which were identified by a polyphasic taxonomic study based on molecular phylogenetics, physiological and biochemical characteristics. However, phylogenetic analysis merely based on 16S rRNA gene sequences cannot infer a robust and reliable phylo...

    journal_title:International journal of systematic and evolutionary microbiology

    pub_type: 杂志文章

    doi:10.1099/ijsem.0.003425

    authors: Jiang Z,Xiao M,Yang LL,Zhi XY,Li WJ

    更新日期:2019-07-01 00:00:00

  • Sphingoaurantiacus capsulatus sp. nov., isolated from mountain soil, and emended description of the genus Sphingoaurantiacus.

    abstract::A novel Gram-stain-negative, strictly aerobic, non-motile, rod-shaped, capsule-forming bacterium, designated strain YLT33T, that formed orange-red colonies was isolated from mountain cliff soil from Enshi Grand Canyon, southwest China. Growth occurred at 4-35 °C (optimum 28 °C) and at pH 6.0-10.0 (optimum 7.0). It sho...

    journal_title:International journal of systematic and evolutionary microbiology

    pub_type: 杂志文章

    doi:10.1099/ijsem.0.001447

    authors: Tan Y,Wang Y,Wang D,Wang G,Zheng S

    更新日期:2016-12-01 00:00:00

  • Multilocus sequence analysis of the family Halomonadaceae.

    abstract::Multilocus sequence analysis (MLSA) protocols have been developed for species circumscription for many taxa. However, at present, no studies based on MLSA have been performed within any moderately halophilic bacterial group. To test the usefulness of MLSA with these kinds of micro-organisms, the family Halomonadaceae,...

    journal_title:International journal of systematic and evolutionary microbiology

    pub_type: 杂志文章

    doi:10.1099/ijs.0.032938-0

    authors: de la Haba RR,Márquez MC,Papke RT,Ventosa A

    更新日期:2012-03-01 00:00:00

  • Marinobacter halophilus sp. nov., a halophilic bacterium isolated from a salt lake.

    abstract::A Gram-staining-negative bacterium, strain XCD-X12(T), was isolated from Xiaochaidan Lake, a salt lake (salinity 9.9%, w/w) in Qaidam basin, Qinghai Province, China. Its taxonomic position was determined by using a polyphasic approach. Cells of strain XCD-X12(T) were non-spore-forming rods, 0.4-0.7 μm wide, 2.1-3.2 μm...

    journal_title:International journal of systematic and evolutionary microbiology

    pub_type: 杂志文章

    doi:10.1099/ijs.0.000338

    authors: Zhong ZP,Liu Y,Liu HC,Wang F,Zhou YG,Liu ZP

    更新日期:2015-09-01 00:00:00

  • Dissection of the genus Methylibium: reclassification of Methylibium fulvum as Rhizobacter fulvus comb. nov., Methylibium aquaticum as Piscinibacter aquaticus gen. nov., comb. nov. and Methylibium subsaxonicum as Rivibacter subsaxonicus gen. nov., comb. n

    abstract::16S rRNA gene sequenced-based phylogeny indicates that Rhizobacter dauci ATCC 43778(T) branches within the radiation of Methylibium type strains. A comparative chemotaxonomic study including fatty acid methyl esters, polar lipids and polyamines reveals significant differences that, in combination with the topology of ...

    journal_title:International journal of systematic and evolutionary microbiology

    pub_type: 杂志文章

    doi:10.1099/ijs.0.008383-0

    authors: Stackebrandt E,Verbarg S,Frühling A,Busse HJ,Tindall BJ

    更新日期:2009-10-01 00:00:00

  • Desulfotomaculum defluvii sp. nov., a sulfate-reducing bacterium isolated from the subsurface environment of a landfill.

    abstract::A novel sulfate-reducing, strictly anaerobic and endospore-forming bacterium, designated strain A5LFS102(T), was isolated from a subsurface landfill sample. The strain was characterized using a polyphasic approach. Optimal growth was observed at 37 °C and pH 7.5 with sulfate as an electron acceptor. Sulfite and thiosu...

    journal_title:International journal of systematic and evolutionary microbiology

    pub_type: 杂志文章

    doi:10.1099/ijs.0.047662-0

    authors: Krishnamurthi S,Spring S,Kumar PA,Mayilraj S,Klenk HP,Suresh K

    更新日期:2013-06-01 00:00:00

  • Parapedobacter defluvii sp. nov., isolated from the sewage treatment packing of a coking chemical plant.

    abstract::Strain WY-1T, a Gram-stain-negative, non-spore-forming, rod-shaped, non-motile bacterium, was isolated from the sewage treatment packing of a coking chemical plant. Strain WY-1T grew over a temperature range of 15-45 °C (optimum, 30-37 °C), a pH range of 5.5-11.0 (optimum, pH 6.5-7.0) and an NaCl concentration range o...

    journal_title:International journal of systematic and evolutionary microbiology

    pub_type: 杂志文章

    doi:10.1099/ijsem.0.002360

    authors: Yang L,Wang YH,Zhu HZ,Muhadesi JB,Wang BJ,Liu SJ,Jiang CY

    更新日期:2017-11-01 00:00:00

  • Entomomonas moraniae gen. nov., sp. nov., a member of the family Pseudomonadaceae isolated from Asian honey bee gut, possesses a highly reduced genome.

    abstract::The honey bee gut microbiota contains many bacterial lineages that are specific to this ecosystem. Apis cerana, raised across the Asian continent, is of great significance to the maintenance and development of ecology and agriculture in Asia. Here, we report the isolation and characterization of strain QZS01T from the...

    journal_title:International journal of systematic and evolutionary microbiology

    pub_type: 杂志文章

    doi:10.1099/ijsem.0.003731

    authors: Wang J,Su Q,Zhang X,Li C,Luo S,Zhou X,Zheng H

    更新日期:2020-01-01 00:00:00

  • Thalassospira lucentensis gen. nov., sp. nov., a new marine member of the alpha-Proteobacteria.

    abstract::A novel bacterium from the Mediterranean Sea was isolated under oligotrophic conditions at in situ temperature after prolonged continuous culture. The isolates were initially characterized by partial 16S rRNA gene sequencing. Similarity searches of one of the isolates, QMT2T, indicated high sequence identity to the we...

    journal_title:International journal of systematic and evolutionary microbiology

    pub_type: 杂志文章

    doi:10.1099/00207713-52-4-1277

    authors: López-López A,Pujalte MJ,Benlloch S,Mata-Roig M,Rosselló-Mora R,Garay E,Rodríguez-Valera F

    更新日期:2002-07-01 00:00:00

  • Solibius ginsengiterrae gen. nov., sp. nov., isolated from soil of a ginseng field, and emended description of the genus Sediminibacterium and of Sediminibacterium salmoneium.

    abstract::A novel Gram-staining-negative bacterial strain, designated DCY13T, was isolated from soil of a ginseng field in Korea and characterized by using a polyphasic approach. The phylogenetic analysis based on 16S rRNA gene sequences revealed that strain DCY13T forms a cluster with members of the genera Sediminibacterium, F...

    journal_title:International journal of systematic and evolutionary microbiology

    pub_type: 杂志文章,收录出版

    doi:10.1099/ijs.0.011882-0

    authors: Kim YJ,Kim MK,Bui TP,Kim HB,Srinivasan S,Yang DC

    更新日期:2010-12-01 00:00:00