Amphibacillus jilinensis sp. nov., a facultatively anaerobic, alkaliphilic bacillus from a soda lake.

Abstract:

:A facultatively anaerobic, alkaliphilic, spore-forming, Gram-positive-staining rod, designated Y1(T), was isolated under strictly anaerobic conditions from sediment of a soda lake in Jilin province, China. The strain was not dependent on Na(+) but was highly halotolerant and grew optimally in medium JY with 0.5 M Na(+) (0.06 M NaHCO(3) and 0.44 M NaCl). The optimum pH for growth was 9.0, with a range of pH 7.5-10.5. No growth occurred at pH 7.0 or 11.0. The strain was mesophilic, with a temperature range of 15-45 °C and optimum growth at 32 °C. Strain Y1(T) was able to use certain mono- and oligosaccharides. Soluble starch and casein were hydrolysed. The methyl red test, Voges-Proskauer test and tests for catalase and oxidase activities were negative. The predominant fatty acids were anteiso-C(15 : 0) and iso-C(15 : 0). Comparative 16S rRNA gene sequence analysis revealed 93.4-96.8 % sequence similarity to members of the genus Amphibacillus. The DNA G+C content was 37.7 mol% (T(m) method). The DNA-DNA relatedness of strain Y1(T) with respect to Amphibacillus tropicus DSM 13870(T) and Amphibacillus sediminis DSM 21624(T) was 48 and 37 %, respectively. On the basis of its phylogenetic position and the DNA-DNA relatedness data as well as its physiological and biochemical properties, strain Y1(T) represents a novel species of the genus Amphibacillus, for which the name Amphibacillus jilinensis sp. nov. is proposed. The type strain is Y1(T) (=CGMCC 1.5123(T) =JCM 16149(T)).

authors

Wu XY,Zheng G,Zhang WW,Xu XW,Wu M,Zhu XF

doi

10.1099/ijs.0.018259-0

subject

Has Abstract

pub_date

2010-11-01 00:00:00

pages

2540-2543

issue

Pt 11

eissn

1466-5026

issn

1466-5034

journal_volume

60

pub_type

杂志文章
  • Pseudonocardia acaciae sp. nov., isolated from roots of Acacia auriculiformis A. Cunn. ex Benth.

    abstract::A novel Gram-positive-staining actinomycete designated strain GMKU095(T) was isolated from surface-sterilized roots of Acacia auriculiformis A. Cunn. ex Benth. (earpod wattle). The organism produced branching mycelium. The spores were non-motile and had a spiny surface. Growth of strain GMKU095(T) occurred at 18-42 de...

    journal_title:International journal of systematic and evolutionary microbiology

    pub_type: 杂志文章

    doi:10.1099/ijs.0.007724-0

    authors: Duangmal K,Thamchaipenet A,Matsumoto A,Takahashi Y

    更新日期:2009-06-01 00:00:00

  • Yeasts isolated from a fungus-growing ant nest, including the description of Trichosporon chiarellii sp. nov., an anamorphic basidiomycetous yeast.

    abstract::Thirty-nine yeast strains were recovered from a field nest of a primitive and putative novel attine ant species in the genus Myrmicocrypta (Hymenoptera: Formicidae: tribe Attini). Yeasts isolated from the fungus garden and waste deposit included Candida dubliniensis, Candida oleophila, Cryptococcus haglerorum and Hans...

    journal_title:International journal of systematic and evolutionary microbiology

    pub_type: 杂志文章

    doi:10.1099/ijs.0.015727-0

    authors: Pagnocca FC,Legaspe MFC,Rodrigues A,Ruivo CCC,Nagamoto NS,Bacci M,Forti LC

    更新日期:2010-06-01 00:00:00

  • Pseudonocardia dioxanivorans sp. nov., a novel actinomycete that grows on 1,4-dioxane.

    abstract::An actinomycete strain (CB1190(T)) was previously isolated from industrial sludge contaminated with 1,4-dioxane. The cells of this culture are Gram-positive and exhibit branching aerial and vegetative mycelium. Analysis of the 16S rRNA gene sequence indicates that the strain belongs to the genus Pseudonocardia, closel...

    journal_title:International journal of systematic and evolutionary microbiology

    pub_type: 杂志文章

    doi:10.1099/ijs.0.63085-0

    authors: Mahendra S,Alvarez-Cohen L

    更新日期:2005-03-01 00:00:00

  • Genome analysis-based reclassification of Enterobacter tabaci Duan et al. 2016 as a later heterotypic synonym of Enterobacter mori Zhu et al. 2011.

    abstract::We performed a comparative genomic analysis to clarify the taxonomic relationship between the two Enterobacter species, Enterobacter tabaci and Enterobacter mori. Whole genome sequences of types strains of the two species became available recently. Average nucleotide identity (ANI) and in silico DNA-DNA hybridization ...

    journal_title:International journal of systematic and evolutionary microbiology

    pub_type: 杂志文章

    doi:10.1099/ijsem.0.003871

    authors: Wu W,Zong Z

    更新日期:2020-02-01 00:00:00

  • Methylocapsa acidiphila gen. nov., sp. nov., a novel methane-oxidizing and dinitrogen-fixing acidophilic bacterium from Sphagnum bog.

    abstract::A novel genus and species, Methylocapsa acidiphila gen. nov., sp. nov., are proposed for a methane-oxidizing bacterium isolated from an acidic Sphagnum peat bog. This bacterium, designated strain B2T, represents aerobic, gram-negative, colourless, non-motile, curved coccoids that form conglomerates covered by an extra...

    journal_title:International journal of systematic and evolutionary microbiology

    pub_type: 杂志文章

    doi:10.1099/00207713-52-1-251

    authors: Dedysh SN,Khmelenina VN,Suzina NE,Trotsenko YA,Semrau JD,Liesack W,Tiedje JM

    更新日期:2002-01-01 00:00:00

  • Jeotgalibacillus salarius sp. nov., isolated from a marine saltern, and reclassification of Marinibacillus marinus and Marinibacillus campisalis as Jeotgalibacillus marinus comb. nov. and Jeotgalibacillus campisalis comb. nov., respectively.

    abstract::A Gram-variable, motile and rod-shaped bacterial strain, ASL-1(T), was isolated from a marine saltern located on the coast of the Yellow Sea, Korea. A neighbour-joining phylogenetic tree based on 16S rRNA gene sequences showed that strain ASL-1(T) clustered with Jeotgalibacillus alimentarius YKJ-13(T) and that this cl...

    journal_title:International journal of systematic and evolutionary microbiology

    pub_type: 杂志文章

    doi:10.1099/ijs.0.008318-0

    authors: Yoon JH,Kang SJ,Schumann P,Oh TK

    更新日期:2010-01-01 00:00:00

  • Stenotrophomonas koreensis sp. nov., isolated from compost in South Korea.

    abstract::A Gram-negative, rod-shaped, non-spore-forming bacterium (TR6-01T) was isolated from compost near Daejeon city in South Korea. On the basis of 16S rRNA gene sequence similarity, strain TR6-01T was shown to belong to the class Gammaproteobacteria, related to Stenotrophomonas acidaminiphila (97.1 %) and Stenotrophomonas...

    journal_title:International journal of systematic and evolutionary microbiology

    pub_type: 杂志文章

    doi:10.1099/ijs.0.63826-0

    authors: Yang HC,Im WT,Kang MS,Shin DY,Lee ST

    更新日期:2006-01-01 00:00:00

  • Corynebacterium spheniscorum sp. nov., isolated from the cloacae of wild penguins.

    abstract::Twenty unidentified Gram-positive, rod-shaped organisms were recovered from the cloacae of apparently healthy wild penguins (Spheniscus magellanicus) and subjected to a polyphasic taxonomic analysis. On the basis of cellular morphology and biochemical criteria, the isolates were tentatively assigned to the genus Coryn...

    journal_title:International journal of systematic and evolutionary microbiology

    pub_type: 杂志文章

    doi:10.1099/ijs.0.02343-0

    authors: Goyache J,Vela AI,Collins MD,Ballesteros C,Briones V,Moreno J,Yorio P,Domínguez L,Hutson R,Fernández-Garayzábal JF

    更新日期:2003-01-01 00:00:00

  • Eilatimonas milleporae gen. nov., sp. nov., a marine bacterium isolated from the hydrocoral Millepora dichotoma.

    abstract::A marine bacterial strain, designated MD2(T), was isolated from the damaged tissue of a hydrocoral, Millepora dichotoma, collected from the coral reef in the northern Red Sea, Gulf of Eilat, Israel. Strain MD2(T) was Gram-reaction-negative, rod-shaped and motile, and formed small, creamy and opaque colonies, 1-2 mm in...

    journal_title:International journal of systematic and evolutionary microbiology

    pub_type: 杂志文章

    doi:10.1099/ijs.0.043976-0

    authors: Paramasivam N,Ben-Dov E,Arotsker L,Kushmaro A

    更新日期:2013-05-01 00:00:00

  • Lactobacillus rossii sp. nov., isolated from wheat sourdough.

    abstract::Screening of sourdough lactic acid bacteria for bacteriocin production resulted in the isolation of a Gram-positive, catalase-negative, non-spore-forming, non-motile rod bacterium (strain CS1T) that could not be associated with any previously described species. Comparative 16S rRNA gene sequence analysis recognized st...

    journal_title:International journal of systematic and evolutionary microbiology

    pub_type: 杂志文章

    doi:10.1099/ijs.0.63075-0

    authors: Corsetti A,Settanni L,van Sinderen D,Felis GE,Dellaglio F,Gobbetti M

    更新日期:2005-01-01 00:00:00

  • Desulfocurvus vexinensis gen. nov., sp. nov., a sulfate-reducing bacterium isolated from a deep subsurface aquifer.

    abstract::A novel anaerobic, chemo-organotrophic bacterium, designated VNs36(T), was isolated from a well that collected water from a deep saline aquifer used for underground gas storage at a depth of 830 m in the Paris Basin, France. Cells were curved motile rods or vibrios (3.0-5.0x0.5 microm). Strain VNs36(T) grew at tempera...

    journal_title:International journal of systematic and evolutionary microbiology

    pub_type: 杂志文章

    doi:10.1099/ijs.0.010363-0

    authors: Klouche N,Basso O,Lascourrèges JF,Cayol JL,Thomas P,Fauque G,Fardeau ML,Magot M

    更新日期:2009-12-01 00:00:00

  • Alkanibacter difficilis gen. nov., sp. nov. and Singularimonas variicoloris gen. nov., sp. nov., hexane-degrading bacteria isolated from a hexane-treated biofilter.

    abstract::Two Gram-negative, rod-shaped, non-spore-forming bacterial strains were isolated from a hexane-treated, full-scale biofilter from an oil mill. The strains were cultivated with hexane as the sole carbon source. One strain, MN154.3(T), showed a fatty acid profile that contained 16 : 0, 18 : 1cis11 and 19 : 0 cyclo11-12 ...

    journal_title:International journal of systematic and evolutionary microbiology

    pub_type: 杂志文章

    doi:10.1099/ijs.0.65517-0

    authors: Friedrich MM,Lipski A

    更新日期:2008-10-01 00:00:00

  • Deinococcus antarcticus sp. nov., isolated from soil.

    abstract::A pink-pigmented, non-motile, coccoid bacterial strain, designated G3-6-20(T), was isolated from a soil sample collected in the Grove Mountains, East Antarctica. This strain was resistant to UV irradiation (810 J m(-2)) and slightly more sensitive to desiccation as compared with Deinococcus radiodurans. Phylogenetic a...

    journal_title:International journal of systematic and evolutionary microbiology

    pub_type: 杂志文章

    doi:10.1099/ijs.0.066324-0

    authors: Dong N,Li HR,Yuan M,Zhang XH,Yu Y

    更新日期:2015-02-01 00:00:00

  • Paenalcaligenes hominis gen. nov., sp. nov., a new member of the family Alcaligenaceae.

    abstract::A beige-pigmented bacterium (strain CCUG 53761A(T)) was isolated from human blood from an 85-year-old man in Göteborg, Sweden. Comparative analysis of 16S rRNA gene sequences showed that this bacterium displayed <95 % similarity to all described species of the genera of the family Alcaligenaceae. It grouped within the...

    journal_title:International journal of systematic and evolutionary microbiology

    pub_type: 杂志文章

    doi:10.1099/ijs.0.016576-0

    authors: Kämpfer P,Falsen E,Langer S,Lodders N,Busse HJ

    更新日期:2010-07-01 00:00:00

  • Proposal of 'Candidatus Frankia alpina', the uncultured symbiont of Alnus alnobetula and A. incana that forms spore-containing nitrogen-fixing root nodules.

    abstract::The members of the genus Frankia are, with a few exceptions, a group of nitrogen-fixing symbiotic actinobacteria that nodulate mostly woody dicotyledonous plants belonging to three orders, eight families and 23 genera of pioneer dicots. These bacteria have been characterized phylogenetically and grouped into four mole...

    journal_title:International journal of systematic and evolutionary microbiology

    pub_type: 杂志文章

    doi:10.1099/ijsem.0.004433

    authors: Pozzi ACM,Herrera-Belaroussi A,Schwob G,Bautista-Guerrero HH,Bethencourt L,Fournier P,Dubost A,Abrouk D,Normand P,Fernandez MP

    更新日期:2020-10-01 00:00:00

  • Cohaesibacter haloalkalitolerans sp. nov., isolated from a soda lake, and emended description of the genus Cohaesibacter.

    abstract::Two novel Gram-stain-negative, motile, catalase-negative and oxidase-positive strains of bacteria (JC131(T) and JC112) were isolated from Lonar, a soda lake in India. Based on 16S rRNA gene sequence similarity studies, strains JC131(T) and JC112 belong to the family Cohaesibacteraceae of the class Alphaproteobacteria ...

    journal_title:International journal of systematic and evolutionary microbiology

    pub_type: 杂志文章

    doi:10.1099/ijs.0.050112-0

    authors: Sultanpuram VR,Lodha TD,Chintalapati VR,Chintalapati S

    更新日期:2013-11-01 00:00:00

  • Gracilibacillus oryzae sp. nov., isolated from rice seeds.

    abstract::A Gram-stain-positive, facultatively anaerobic, endospore-forming bacterium, designated strain TD8T, was isolated from surface-sterilized rice seeds (Oryza sativa L.). Phylogenetic analysis of the 16S rRNA gene indicated that strain TD8T should be placed within the genus Gracilibacillus (95.2-99.0 % sequence similarit...

    journal_title:International journal of systematic and evolutionary microbiology

    pub_type: 杂志文章

    doi:10.1099/ijsem.0.004427

    authors: He SW,Wang X,Guo HB,Han JG,Thin KK,Gao JS,Ma LA,Zhang XX

    更新日期:2020-10-01 00:00:00

  • Enterobacter oryzae sp. nov., a nitrogen-fixing bacterium isolated from the wild rice species Oryza latifolia.

    abstract::Twelve facultatively anaerobic, endophytic diazotrophs were isolated from surface-sterilized roots of the wild rice species Oryza latifolia and characterized by phenotypic and molecular methods. Six isolates were grouped together as group A by phenotypic characters, and this grouping was confirmed by SDS-PAGE whole-ce...

    journal_title:International journal of systematic and evolutionary microbiology

    pub_type: 杂志文章

    doi:10.1099/ijs.0.65484-0

    authors: Peng G,Zhang W,Luo H,Xie H,Lai W,Tan Z

    更新日期:2009-07-01 00:00:00

  • Thioalbus denitrificans gen. nov., sp. nov., a chemolithoautotrophic sulfur-oxidizing gammaproteobacterium, isolated from marine sediment.

    abstract::A mesophilic, facultatively anaerobic, autotrophic bacterium, designated strain Su4(T), was isolated from marine sediment. The isolate was able to utilize reduced sulfur compounds including thiosulfate, tetrathionate, sulfur and sulfide but not sulfite as the energy source. Growth occurred under aerobic and denitrifyi...

    journal_title:International journal of systematic and evolutionary microbiology

    pub_type: 杂志文章

    doi:10.1099/ijs.0.024844-0

    authors: Park SJ,Pham VH,Jung MY,Kim SJ,Kim JG,Roh DH,Rhee SK

    更新日期:2011-09-01 00:00:00

  • Salegentibacter mishustinae sp. nov., isolated from the sea urchin Strongylocentrotus intermedius.

    abstract::A bacterial strain, designated KMM 6049T, was isolated from the sea urchin Strongylocentrotus intermedius inhabiting the Sea of Japan. The bacterium studied was strictly aerobic, heterotrophic, yellow-pigmented, non-motile, Gram-negative and oxidase-, catalase-, beta-galactosidase- and alkaline phosphatase-positive. 1...

    journal_title:International journal of systematic and evolutionary microbiology

    pub_type: 杂志文章

    doi:10.1099/ijs.0.63297-0

    authors: Nedashkovskaya OI,Kim SB,Lysenko AM,Mikhailov VV,Bae KS,Kim IS

    更新日期:2005-01-01 00:00:00

  • Advantages of multilocus sequence analysis for taxonomic studies: a case study using 10 housekeeping genes in the genus Ensifer (including former Sinorhizobium).

    abstract::There is a need for easy, practical, reliable and robust techniques for the identification and classification of bacterial isolates to the species level as alternatives to 16S rRNA gene sequence analysis and DNA-DNA hybridization. Here, we demonstrate that multilocus sequence analysis (MLSA) of housekeeping genes is a...

    journal_title:International journal of systematic and evolutionary microbiology

    pub_type: 杂志文章

    doi:10.1099/ijs.0.65392-0

    authors: Martens M,Dawyndt P,Coopman R,Gillis M,De Vos P,Willems A

    更新日期:2008-01-01 00:00:00

  • Acinetobacter dijkshoorniae is a later heterotypic synonym of Acinetobacter lactucae.

    abstract::Acinetobacter lactucae and Acinetobacter dijkshoorniae were recently described as novel species, and both were reported to be closely related to Acinetobacter pittii. Because they were reviewed and published almost concurrently, their descriptions did not include a specific comparison between these two novel species. ...

    journal_title:International journal of systematic and evolutionary microbiology

    pub_type: 杂志文章

    doi:10.1099/ijsem.0.002470

    authors: Dunlap CA,Rooney AP

    更新日期:2018-01-01 00:00:00

  • Flavobacterium luticocti sp. nov., isolated from wastewater.

    abstract::A Gram-stain-negative, non-spore-forming, rod-shaped and non-motile bacterium, designated strain xz20T, was isolated from the wastewater of a municipal wastewater treatment plant in Xuzhou, China. The taxonomic status of strain xz20T was determined using a polyphasic approach. Growth occurred at 15-40 °C (optimum, 25-...

    journal_title:International journal of systematic and evolutionary microbiology

    pub_type: 杂志文章

    doi:10.1099/ijsem.0.001634

    authors: Liu H,Lu P,Jin L,Zhu G

    更新日期:2017-02-01 00:00:00

  • Flavobacterium collinsense sp. nov., isolated from a till sample of an Antarctic glacier.

    abstract::A novel rod-shaped, Gram-stain-negative, non-gliding and aerobic strain surrounded by a multilayer capsule, designated 4-T-2T, was isolated from a till sample of Collins glacier front, Antarctica. The bacterium formed yellow, circular, convex and smooth colonies. Growth occurred at 4-28 °C (optimum18-20 °C), at pH 7.0...

    journal_title:International journal of systematic and evolutionary microbiology

    pub_type: 杂志文章

    doi:10.1099/ijsem.0.000688

    authors: Zhang Y,Jiang F,Chang X,Qiu X,Ren L,Qu Z,Deng S,Da X,Fang C,Peng F

    更新日期:2016-01-01 00:00:00

  • Lentibacillus lacisalsi sp. nov., a moderately halophilic bacterium isolated from a saline lake in China.

    abstract::An aerobic, spore-forming, moderately halophilic bacterium, strain BH260(T), was isolated from a salt lake in China. Cells of this strain were found to be motile rods with flagella. The organism grew optimally at 30-32 degrees C and pH 8.0 in the presence of 12-15% (w/v) NaCl. Phylogenetic analysis based on 16S rRNA g...

    journal_title:International journal of systematic and evolutionary microbiology

    pub_type: 杂志文章

    doi:10.1099/ijs.0.63721-0

    authors: Lim JM,Jeon CO,Song SM,Lee JC,Ju YJ,Xu LH,Jiang CL,Kim CJ

    更新日期:2005-09-01 00:00:00

  • Rhodothermus profundi sp. nov., a thermophilic bacterium isolated from a deep-sea hydrothermal vent in the Pacific Ocean.

    abstract::Nine thermophilic strains of aerobic, non-sporulating, heterotrophic bacteria were isolated after enrichment of chimney material sampled from a deep-sea hydrothermal field at a depth of 2634m on the East-Pacific Rise (1 °N). The bacteria stained Gram-negative. They were rod-shaped and measured approximately 0.5μm in w...

    journal_title:International journal of systematic and evolutionary microbiology

    pub_type: 杂志文章

    doi:10.1099/ijs.0.012724-0

    authors: Marteinsson VT,Bjornsdottir SH,Bienvenu N,Kristjansson JK,Birrien JL

    更新日期:2010-12-01 00:00:00

  • Taxonomic revision of water-bloom-forming species of oscillatorioid cyanobacteria.

    abstract::A polyphasic approach was used to clarify the taxonomy of the water-bloom-forming oscillatorioid cyanobacteria. Seventy-five strains of oscillatorioid cyanobacteria were characterized by 16S rDNA sequence analysis, DNA base composition, DNA-DNA hybridization, fatty acid composition, phycobilin pigment composition, com...

    journal_title:International journal of systematic and evolutionary microbiology

    pub_type: 杂志文章

    doi:10.1099/00207713-52-5-1577

    authors: Suda S,Watanabe MM,Otsuka S,Mahakahant A,Yongmanitchai W,Nopartnaraporn N,Liu Y,Day JG

    更新日期:2002-09-01 00:00:00

  • Janibacter hoylei sp. nov., Bacillus isronensis sp. nov. and Bacillus aryabhattai sp. nov., isolated from cryotubes used for collecting air from the upper atmosphere.

    abstract::Three novel bacterial strains, PVAS-1(T), B3W22(T) and B8W22(T), were isolated from cryotubes used to collect air samples at altitudes of between 27 and 41 km. Based on phenotypic characteristics, chemotaxonomic features, DNA-DNA hybridization with the nearest phylogenetic neighbours and phylogenetic analysis based on...

    journal_title:International journal of systematic and evolutionary microbiology

    pub_type: 杂志文章

    doi:10.1099/ijs.0.002527-0

    authors: Shivaji S,Chaturvedi P,Begum Z,Pindi PK,Manorama R,Padmanaban DA,Shouche YS,Pawar S,Vaishampayan P,Dutt CB,Datta GN,Manchanda RK,Rao UR,Bhargava PM,Narlikar JV

    更新日期:2009-12-01 00:00:00

  • Conservation of Rhodococcus equi (Magnusson 1923) Goodfellow and Alderson 1977 and rejection of Rhodococcus hoagii (Morse 1912) Kämpfer et al. 2014.

    abstract::A recent taxonomic study confirmed the synonymy of Rhodococcus equi (Magnusson 1923) Goodfellow and Alderson 1977 and Corynebacterium hoagii (Morse 1912) Eberson 1918. As a result, both R. equi and C. hoagii were reclassified as Rhodococcus hoagii comb. nov. in application of the principle of priority of the Prokaryot...

    journal_title:International journal of systematic and evolutionary microbiology

    pub_type: 杂志文章

    doi:10.1099/ijsem.0.004090

    authors: Vázquez-Boland JA,Scortti M,Meijer WG

    更新日期:2020-05-01 00:00:00

  • Characterization of Vibrio viscosus and Vibrio wodanis isolated at different geographical locations: a proposal for reclassification of Vibrio viscosus as Moritella viscosa comb. nov.

    abstract::Vibrio viscosus and Vibrio wodanis are recently described species of psychrotropic bacteria that have been found associated with a disease called 'winter ulcer', affecting salmonid fish reared in saline water in Norway, Iceland and recently in Scotland. V. viscosus and V. wodanis strains initially isolated from fish i...

    journal_title:International journal of systematic and evolutionary microbiology

    pub_type: 杂志文章

    doi:10.1099/00207713-50-2-479

    authors: Benediktsdóttir E,Verdonck L,Spröer C,Helgason S,Swings J

    更新日期:2000-03-01 00:00:00