当前位置： SCI文献检索 > NEUROIMAGE期刊下所有文献 > An open, multi-vendor, multi-field-strength brain MR dataset and analysis of publicly available skull stripping methods agreement.

An open, multi-vendor, multi-field-strength brain MR dataset and analysis of publicly available skull stripping methods agreement.

Abstract：

:This paper presents an open, multi-vendor, multi-field strength magnetic resonance (MR) T1-weighted volumetric brain imaging dataset, named Calgary-Campinas-359 (CC-359). The dataset is composed of images of older healthy adults (29-80 years) acquired on scanners from three vendors (Siemens, Philips and General Electric) at both 1.5 T and 3 T. CC-359 is comprised of 359 datasets, approximately 60 subjects per vendor and magnetic field strength. The dataset is approximately age and gender balanced, subject to the constraints of the available images. It provides consensus brain extraction masks for all volumes generated using supervised classification. Manual segmentation results for twelve randomly selected subjects performed by an expert are also provided. The CC-359 dataset allows investigation of 1) the influences of both vendor and magnetic field strength on quantitative analysis of brain MR; 2) parameter optimization for automatic segmentation methods; and potentially 3) machine learning classifiers with big data, specifically those based on deep learning methods, as these approaches require a large amount of data. To illustrate the utility of this dataset, we compared to the results of a supervised classifier, the results of eight publicly available skull stripping methods and one publicly available consensus algorithm. A linear mixed effects model analysis indicated that vendor (p-value<0.001) and magnetic field strength (p-value<0.001) have statistically significant impacts on skull stripping results.

journal_name

Neuroimage

journal_title

NeuroImage

authors

Souza R,Lucena O,Garrafa J,Gobbi D,Saluzzi M,Appenzeller S,Rittner L,Frayne R,Lotufo R

doi

10.1016/j.neuroimage.2017.08.021

subject

Has Abstract

pub_date

2018-04-15 00:00:00

pages

482-494

eissn

1053-8119

issn

1095-9572

pii

S1053-8119(17)30668-7

journal_volume

170

pub_type

杂志文章,评审

相关文献

NEUROIMAGE文献大全
  • MR-based statistical atlas of the Göttingen minipig brain.

    abstract：:Thedomestic pig is increasingly being used as an experimental model for brain imaging studies with positron emission tomography (PET). The recording of radiotracer uptake by PET gives functional and physiological information, but with poor spatial resolution. To date, anatomical regions of interest in pig brain have b...

    journal_title：NeuroImage

    pub_type： 杂志文章

    doi：10.1006/nimg.2001.0910

    authors： Watanabe H,Andersen F,Simonsen CZ,Evans SM,Gjedde A,Cumming P,DaNeX Study Group.

    更新日期：2001-11-01 00:00:00

  • Encoding schemes in somatosensation: From micro- to meta-topography.

    abstract：:Encoding schemes are systematic large-scale arrangements that convert incoming sensory information into a format required for further information processing. The increased spatial resolution of brain images obtained with ultra-high field magnetic resonance imaging at 7 T (7T-MRI) and above increases the granularity an...

    journal_title：NeuroImage

    pub_type： 杂志文章

    doi：10.1016/j.neuroimage.2020.117255

    authors： Kuehn E,Pleger B

    更新日期：2020-12-01 00:00:00

  • Overlapping activity in anterior insula during interoception and emotional experience.

    abstract：:Classic theories of emotion posit that awareness of one's internal bodily states (interoception) is a key component of emotional experience. This view has been indirectly supported by data demonstrating similar patterns of brain activity - most importantly, in the anterior insula - during both interoception and emotio...

    journal_title：NeuroImage

    pub_type： 杂志文章

    doi：10.1016/j.neuroimage.2012.05.012

    authors： Zaki J,Davis JI,Ochsner KN

    更新日期：2012-08-01 00:00:00

  • Automated fiber tracking of human brain white matter using diffusion tensor imaging.

    abstract：:Reconstruction of white matter tracts based on diffusion tensor imaging (DTI) is currently widely used in clinical research. This reconstruction allows us to identify coordinates of specific white matter tracts and to investigate their anatomy. Fiber reconstruction, however, relies on manual identification of anatomic...

    journal_title：NeuroImage

    pub_type： 杂志文章

    doi：10.1016/j.neuroimage.2008.04.241

    authors： Zhang W,Olivi A,Hertig SJ,van Zijl P,Mori S

    更新日期：2008-08-15 00:00:00

  • Left hemisphere lateralization for lexical and acoustic pitch processing in Cantonese speakers as revealed by mismatch negativity.

    abstract：:For nontonal language speakers, speech processing is lateralized to the left hemisphere and musical processing is lateralized to the right hemisphere (i.e., function-dependent brain asymmetry). On the other hand, acoustic temporal processing is lateralized to the left hemisphere and spectral/pitch processing is latera...

    journal_title：NeuroImage

    pub_type： 杂志文章

    doi：10.1016/j.neuroimage.2013.02.080

    authors： Gu F,Zhang C,Hu A,Zhao G

    更新日期：2013-12-01 00:00:00

  • Database integration of protocol-specific neurological imaging datasets.

    abstract：:For many years now, Magnetic Resonance Innovations (MR Innovations), a magnetic resonance imaging (MRI) software development, technology, and research company, has been aggregating a multitude of MRI data from different scanning sites through its collaborations and research contracts. The majority of the data has adhe...

    journal_title：NeuroImage

    pub_type： 杂志文章

    doi：10.1016/j.neuroimage.2015.04.066

    authors： Pacurar EE,Sethi SK,Habib C,Laze MO,Martis-Laze R,Haacke EM

    更新日期：2016-01-01 00:00:00

  • High and ultra-high resolution metabolite mapping of the human brain using 1H FID MRSI at 9.4T.

    abstract：:Magnetic resonance spectroscopic imaging (MRSI) is a promising technique for mapping the spatial distribution of multiple metabolites in the human brain. These metabolite maps can be used as a diagnostic tool to gain insight into several biochemical processes and diseases in the brain. In comparison to lower field str...

    journal_title：NeuroImage

    pub_type： 杂志文章

    doi：10.1016/j.neuroimage.2016.12.065

    authors： Nassirpour S,Chang P,Henning A

    更新日期：2018-03-01 00:00:00

  • Quantitative phase contrast MRI of penetrating arteries in centrum semiovale at 7T.

    abstract：:Pathological changes of penetrating arteries (PA) within the centrum semiovale is an important contributing factor of cerebral small vessel disease (SVD). However, quantitative characterization of the PAs remains challenging due to their sub-voxel sizes. Here, we proposed a Model-based Analysis of Complex Difference i...

    journal_title：NeuroImage

    pub_type： 杂志文章

    doi：10.1016/j.neuroimage.2019.03.059

    authors： Zong X,Lin W

    更新日期：2019-07-15 00:00:00

  • rest2vec: Vectorizing the resting-state functional connectome using graph embedding.

    abstract：:Resting-state functional magnetic resonance imaging (rs-fMRI) is widely used in connectomics for studying the functional relationships between regions of the human brain. rs-fMRI connectomics, however, has inherent analytical challenges, such as how to properly model negative correlations between BOLD time series. In ...

    journal_title：NeuroImage

    pub_type： 杂志文章

    doi：10.1016/j.neuroimage.2020.117538

    authors： Morrissey ZD,Zhan L,Ajilore O,Leow AD

    更新日期：2021-02-01 00:00:00

  • Phonological manipulation between speech perception and production activates a parieto-frontal circuit.

    abstract：:Repetition has been shown to activate the so-called 'dorsal stream', a network of temporo-parieto-frontal areas subserving the mapping of acoustic speech input onto articulatory-motor representations. Among these areas, a region in the posterior Sylvian fissure at the temporo-parietal boundary (also called 'area Spt')...

    journal_title：NeuroImage

    pub_type： 杂志文章

    doi：10.1016/j.neuroimage.2011.07.025

    authors： Peschke C,Ziegler W,Eisenberger J,Baumgaertner A

    更新日期：2012-01-02 00:00:00

  • Intersubject similarity of personality is associated with intersubject similarity of brain connectivity patterns.

    abstract：:Personality is a central high-level psychological concept that defines individual human beings and has been associated with a variety of real-world outcomes (e.g., mental health and academic performance). Using 2 h, high resolution, functional magnetic resonance imaging (fMRI) resting state data of 984 (primary datase...

    journal_title：NeuroImage

    pub_type： 杂志文章

    doi：10.1016/j.neuroimage.2018.10.062

    authors： Liu W,Kohn N,Fernández G

    更新日期：2019-02-01 00:00:00

  • Decreased structural connectivity and resting-state brain activity in the lateral occipital cortex is associated with social communication deficits in boys with autism spectrum disorder.

    abstract：:Autism spectrum disorder (ASD) is a prevalent neurodevelopmental disorder characterized by atypical social communication and repetitive behaviors. In this study, we applied a multimodal approach to investigate brain structural connectivity, resting state activity, and surface area, as well as their associations with t...

    journal_title：NeuroImage

    pub_type： 杂志文章

    doi：10.1016/j.neuroimage.2017.09.031

    authors： Jung M,Tu Y,Lang CA,Ortiz A,Park J,Jorgenson K,Kong XJ,Kong J

    更新日期：2019-04-15 00:00:00

  • Double dissociation between action-driven and perception-driven conflict resolution invoking anterior versus posterior brain systems.

    abstract：:The ability to select and integrate relevant information in the presence of competing irrelevant information can be enhanced by advance information to direct attention and guide response selection. Attentional preparation can reduce perceptual and response conflict, yet little is known about the neural source of confl...

    journal_title：NeuroImage

    pub_type： 杂志文章

    doi：10.1016/j.neuroimage.2009.06.058

    authors： Schulte T,Müller-Oehring EM,Vinco S,Hoeft F,Pfefferbaum A,Sullivan EV

    更新日期：2009-11-01 00:00:00

  • Pseudocontinuous arterial spin labeling perfusion magnetic resonance imaging--a normative study of reproducibility in the human brain.

    abstract：:Pseudocontinuous arterial spin labeling (PCASL), a newly proposed perfusion magnetic resonance imaging (MRI) technique, has the potential of providing a better balance between labeling efficiency and signal-to-noise ratio than conventional ASL methods. The advantage will not be exploitable until adequate reproducibili...

    journal_title：NeuroImage

    pub_type： 杂志文章

    doi：10.1016/j.neuroimage.2011.02.080

    authors： Wu WC,Jiang SF,Yang SC,Lien SH

    更新日期：2011-06-01 00:00:00

  • The impact of prior risk experiences on subsequent risky decision-making: the role of the insula.

    abstract：:Risky decision-making is significantly affected by homeostatic states associated with different prior risk experiences, yet the neural mechanisms have not been well understood. Using functional MRI, we examined how gambling decisions and their underlying neural responses were modulated by prior risk experiences, with ...

    journal_title：NeuroImage

    pub_type： 杂志文章

    doi：10.1016/j.neuroimage.2009.12.097

    authors： Xue G,Lu Z,Levin IP,Bechara A

    更新日期：2010-04-01 00:00:00

  • Individual alpha peak frequency is related to latent factors of general cognitive abilities.

    abstract：:Some eighty years after the discovery of the human electroencephalogram (EEG) and its dominant rhythm, alpha (~10Hz), the neurophysiological functions and behavioral correlates of alpha oscillations are still under debate. Similarly, the biological mechanisms contributing to the general factor of intelligence, or g, h...

    journal_title：NeuroImage

    pub_type： 杂志文章

    doi：10.1016/j.neuroimage.2013.04.059

    authors： Grandy TH,Werkle-Bergner M,Chicherio C,Lövdén M,Schmiedek F,Lindenberger U

    更新日期：2013-10-01 00:00:00

  • Interacting sources of interference during sensorimotor integration processes.

    abstract：:Every day, a multitude of interfering sensory inputs needs to be integrated and adequately processed using response selection processes. Interference effects are typically investigated using classical paradigms like the Flanker and Simon task. The sources of interference for Flanker and Simon effect are known to be di...

    journal_title：NeuroImage

    pub_type： 杂志文章

    doi：10.1016/j.neuroimage.2015.09.075

    authors： Mückschel M,Stock AK,Dippel G,Chmielewski W,Beste C

    更新日期：2016-01-15 00:00:00

  • Attractor concretion as a mechanism for the formation of context representations.

    abstract：:Complex tasks often require the memory of recent events, the knowledge about the context in which they occur, and the goals we intend to reach. All this information is stored in our mental states. Given a set of mental states, reinforcement learning (RL) algorithms predict the optimal policy that maximizes future rewa...

    journal_title：NeuroImage

    pub_type： 杂志文章

    doi：10.1016/j.neuroimage.2010.01.047

    authors： Rigotti M,Ben Dayan Rubin D,Morrison SE,Salzman CD,Fusi S

    更新日期：2010-09-01 00:00:00

  • Diffusion time dependency along the human corpus callosum and exploration of age and sex differences as assessed by oscillating gradient spin-echo diffusion tensor imaging.

    abstract：:Conventional diffusion imaging uses pulsed gradient spin echo (PGSE) waveforms with diffusion times of tens of milliseconds (ms) to infer differences of white matter microstructure. The combined use of these long diffusion times with short diffusion times (<10 ​ms) enabled by oscillating gradient spin echo (OGSE) wave...

    journal_title：NeuroImage

    pub_type： 杂志文章

    doi：10.1016/j.neuroimage.2020.116533

    authors： Tétreault P,Harkins KD,Baron CA,Stobbe R,Does MD,Beaulieu C

    更新日期：2020-04-15 00:00:00

  • Improvement-related functional plasticity following pitch memory training.

    abstract：:Functional activation patterns of an auditory working memory task were examined prior to and after 5 days of training (1 h/day). A control group with no training was scanned twice at the same intervals to assess test-retest effects. Based on behavioral improvement scores, the training group (n = 14) was divided into "...

    journal_title：NeuroImage

    pub_type： 杂志文章,随机对照试验

    doi：10.1016/j.neuroimage.2005.11.046

    authors： Gaab N,Gaser C,Schlaug G

    更新日期：2006-05-15 00:00:00

  • Increased DAT binding in the early stage of the dopaminergic lesion: a longitudinal [11C]PE2I binding study in the MPTP-monkey.

    abstract：:The delayed appearance of motor symptoms in PD poses a crucial challenge for early detection of the disease. We measured the binding potential of the selective dopamine active transporter (DAT) radiotracer [(11)C]PE2I in MPTP-treated macaque monkeys, thus establishing a detailed profile of the nigrostriatal DA status ...

    journal_title：NeuroImage

    pub_type： 杂志文章

    doi：10.1016/j.neuroimage.2014.07.059

    authors： Vezoli J,Dzahini K,Costes N,Wilson CR,Fifel K,Cooper HM,Kennedy H,Procyk E

    更新日期：2014-11-15 00:00:00

  • Cholinergic enhancement modulates neural correlates of selective attention and emotional processing.

    abstract：:Neocortical cholinergic afferents are proposed to influence both selective attention and emotional processing. In a study of healthy adults we used event-related fMRI while orthogonally manipulating attention and emotionality to examine regions showing effects of cholinergic modulation by the anticholinesterase physos...

    journal_title：NeuroImage

    pub_type： 临床试验,杂志文章,随机对照试验

    doi：10.1016/s1053-8119(03)00302-1

    authors： Bentley P,Vuilleumier P,Thiel CM,Driver J,Dolan RJ

    更新日期：2003-09-01 00:00:00

  • The WU-Minn Human Connectome Project: an overview.

    abstract：:The Human Connectome Project consortium led by Washington University, University of Minnesota, and Oxford University is undertaking a systematic effort to map macroscopic human brain circuits and their relationship to behavior in a large population of healthy adults. This overview article focuses on progress made duri...

    journal_title：NeuroImage

    pub_type： 杂志文章,评审

    doi：10.1016/j.neuroimage.2013.05.041

    authors： Van Essen DC,Smith SM,Barch DM,Behrens TE,Yacoub E,Ugurbil K,WU-Minn HCP Consortium.

    更新日期：2013-10-15 00:00:00

  • Variational Bayesian mixed-effects inference for classification studies.

    abstract：:Multivariate classification algorithms are powerful tools for predicting cognitive or pathophysiological states from neuroimaging data. Assessing the utility of a classifier in application domains such as cognitive neuroscience, brain-computer interfaces, or clinical diagnostics necessitates inference on classificatio...

    journal_title：NeuroImage

    pub_type： 杂志文章

    doi：10.1016/j.neuroimage.2013.03.008

    authors： Brodersen KH,Daunizeau J,Mathys C,Chumbley JR,Buhmann JM,Stephan KE

    更新日期：2013-08-01 00:00:00

  • Investigating white matter fibre density and morphology using fixel-based analysis.

    abstract：:Voxel-based analysis of diffusion MRI data is increasingly popular. However, most white matter voxels contain contributions from multiple fibre populations (often referred to as crossing fibres), and therefore voxel-averaged quantitative measures (e.g. fractional anisotropy) are not fibre-specific and have poor interp...

    journal_title：NeuroImage

    pub_type： 杂志文章

    doi：10.1016/j.neuroimage.2016.09.029

    authors： Raffelt DA,Tournier JD,Smith RE,Vaughan DN,Jackson G,Ridgway GR,Connelly A

    更新日期：2017-01-01 00:00:00

  • Oscillatory signatures of crossmodal congruence effects: An EEG investigation employing a visuotactile pattern matching paradigm.

    abstract：:Coherent percepts emerge from the accurate combination of inputs from the different sensory systems. There is an ongoing debate about the neurophysiological mechanisms of crossmodal interactions in the brain, and it has been proposed that transient synchronization of neurons might be of central importance. Oscillatory...

    journal_title：NeuroImage

    pub_type： 杂志文章

    doi：10.1016/j.neuroimage.2015.03.067

    authors： Göschl F,Friese U,Daume J,König P,Engel AK

    更新日期：2015-08-01 00:00:00

  • Dopaminergic dysfunction in attention deficit hyperactivity disorder (ADHD), differences between pharmacologically treated and never treated young adults: a 3,4-dihdroxy-6-[18F]fluorophenyl-l-alanine PET study.

    abstract：:The dopaminergic system plays a key role in attention-deficit/hyperactivity disorder (ADHD). Methylphenidate (MP), a dopamine (DA) reuptake inhibitor, is a drug of first choice for treating ADHD. This cross-over study investigated alterations in DA metabolism in young males with ADHD who had never been pharmacological...

    journal_title：NeuroImage

    pub_type： 杂志文章

    doi：10.1016/j.neuroimage.2008.02.025

    authors： Ludolph AG,Kassubek J,Schmeck K,Glaser C,Wunderlich A,Buck AK,Reske SN,Fegert JM,Mottaghy FM

    更新日期：2008-07-01 00:00:00

  • Tracing the emergence of categorical speech perception in the human auditory system.

    abstract：:Speech perception requires the effortless mapping from smooth, seemingly continuous changes in sound features into discrete perceptual units, a conversion exemplified in the phenomenon of categorical perception. Explaining how/when the human brain performs this acoustic-phonetic transformation remains an elusive probl...

    journal_title：NeuroImage

    pub_type： 杂志文章

    doi：10.1016/j.neuroimage.2013.04.093

    authors： Bidelman GM,Moreno S,Alain C

    更新日期：2013-10-01 00:00:00

  • Promise and pitfalls of g-ratio estimation with MRI.

    abstract：:The fiber g-ratio is the ratio of the inner to the outer diameter of the myelin sheath of a myelinated axon. It has a limited dynamic range in healthy white matter, as it is optimized for speed of signal conduction, cellular energetics, and spatial constraints. In vivo imaging of the g-ratio in health and disease woul...

    journal_title：NeuroImage

    pub_type： 杂志文章,评审

    doi：10.1016/j.neuroimage.2017.08.038

    authors： Campbell JSW,Leppert IR,Narayanan S,Boudreau M,Duval T,Cohen-Adad J,Pike GB,Stikov N

    更新日期：2018-11-15 00:00:00

  • RE: Warnings and caveats in brain controllability.

    abstract：:The use of network control theory to analyze the organization of white matter fibers in the human brain has the potential to enable mechanistic theories of cognition, and to inform the development of novel diagnostics and treatments for neurological disease and psychiatric disorders (Gu et al., 2015). The recent artic...

    journal_title：NeuroImage

    pub_type： 评论,杂志文章

    doi：10.1016/j.neuroimage.2019.05.001

    authors： Pasqualetti F,Gu S,Bassett DS

    更新日期：2019-08-15 00:00:00