A PLC-γ1 Feedback Pathway Regulates Lck Substrate Phosphorylation at the T-Cell Receptor and SLP-76 Complex.

Abstract:

:Phospholipase C gamma 1 (PLC-γ1) occupies a critically important position in the T-cell signaling pathway. While its functions as a regulator of both Ca2+ signaling and PKC-family kinases are well characterized, PLC-γ1's role in the regulation of early T-cell receptor signaling events is incompletely understood. Activation of the T-cell receptor leads to the formation of a signalosome complex between SLP-76, LAT, PLC-γ1, Itk, and Vav1. Recent studies have revealed the existence of both positive and negative feedback pathways from SLP-76 to the apical kinase in the pathway, Lck. To determine if PLC-γ1 contributes to the regulation of these feedback networks, we performed a quantitative phosphoproteomic analysis of PLC-γ1-deficient T cells. These data revealed a previously unappreciated role for PLC-γ1 in the positive regulation of Zap-70 and T-cell receptor tyrosine phosphorylation. Conversely, PLC-γ1 negatively regulated the phosphorylation of SLP-76-associated proteins, including previously established Lck substrate phosphorylation sites within this complex. While the positive and negative regulatory phosphorylation sites on Lck were largely unchanged, Tyr192 phosphorylation was elevated in Jgamma1. The data supports a model wherein Lck's targeting, but not its kinase activity, is altered by PLC-γ1, possibly through Lck Tyr192 phosphorylation and increased association of the kinase with protein scaffolds SLP-76 and TSAd.

journal_name

J Proteome Res

authors

Belmont J,Gu T,Mudd A,Salomon AR

doi

10.1021/acs.jproteome.6b01026

subject

Has Abstract

pub_date

2017-08-04 00:00:00

pages

2729-2742

issue

8

eissn

1535-3893

issn

1535-3907

journal_volume

16

pub_type

杂志文章
  • Comparison of novel decoy database designs for optimizing protein identification searches using ABRF sPRG2006 standard MS/MS data sets.

    abstract::Decoy database searches are used to filter out false positive protein identifications derived from search engines, but there is no consensus about which decoy is "the best". We evaluate nine different decoy designs using public data sets from samples of known composition. Statistically significant performance differen...

    journal_title:Journal of proteome research

    pub_type: 杂志文章

    doi:10.1021/pr800792z

    authors: Blanco L,Mead JA,Bessant C

    更新日期:2009-04-01 00:00:00

  • The left ventricle proteome differentiates middle-aged and old left ventricles in mice.

    abstract::Middle-aged and old left ventricles (LVs) are structurally and functionally very similar. Compared to a young LV, both show increased wall thickness and increased cavity size, with preserved cardiac function. However, when a stressor such as myocardial infarction occurs, striking differences are revealed between young...

    journal_title:Journal of proteome research

    pub_type: 杂志文章

    doi:10.1021/pr700685e

    authors: Dai Q,Escobar GP,Hakala KW,Lambert JM,Weintraub ST,Lindsey ML

    更新日期:2008-02-01 00:00:00

  • High-Resolution Mass Spectrometry Based Proteomic Analysis of the Response to Vancomycin-Induced Cell Wall Stress in Streptomyces coelicolor A3(2).

    abstract::Understanding how bacteria survive periods of cell wall stress is of fundamental interest and can help generate ideas for improved antibacterial treatments. In this study we use tandem mass tagging to characterize the proteomic response of vancomycin resistant Streptomyces coelicolor to the exposure to sublethal level...

    journal_title:Journal of proteome research

    pub_type: 杂志文章

    doi:10.1021/acs.jproteome.5b00242

    authors: Hesketh A,Deery MJ,Hong HJ

    更新日期:2015-07-02 00:00:00

  • Impact of digestion conditions on phosphoproteomics.

    abstract::In the past few years, the focus of phosphoproteomics has shifted from merely qualitative to quantitative and targeted studies. Tryptic digestion is a critical step that directly affects quantification and that can be impaired by phosphorylation. Therefore, we systematically characterized the digestion efficiency of 1...

    journal_title:Journal of proteome research

    pub_type: 杂志文章

    doi:10.1021/pr401181y

    authors: Dickhut C,Feldmann I,Lambert J,Zahedi RP

    更新日期:2014-06-06 00:00:00

  • Visualizing and Clustering Protein Similarity Networks: Sequences, Structures, and Functions.

    abstract::Research in the recent decade has demonstrated the usefulness of protein network knowledge in furthering the study of molecular evolution of proteins, understanding the robustness of cells to perturbation, and annotating new protein functions. In this study, we aimed to provide a general clustering approach to visuali...

    journal_title:Journal of proteome research

    pub_type: 杂志文章

    doi:10.1021/acs.jproteome.5b01031

    authors: Mai TL,Hu GM,Chen CM

    更新日期:2016-07-01 00:00:00

  • N-linked glycoproteomic analysis of formalin-fixed and paraffin-embedded tissues.

    abstract::Formalin-fixed, paraffin-embedded (FFPE) tissues have been used to discover disease-associated protein changes using mass spectrometry. Protein post-translational modifications such as glycosylation are known to associate with disease development. In this study, we investigated whether FFPE tissues preserve such modif...

    journal_title:Journal of proteome research

    pub_type: 杂志文章

    doi:10.1021/pr800952h

    authors: Tian Y,Gurley K,Meany DL,Kemp CJ,Zhang H

    更新日期:2009-04-01 00:00:00

  • Vegetative Cell and Spore Proteomes of Clostridioides difficile Show Finite Differences and Reveal Potential Protein Markers.

    abstract::Clostridioides difficile-associated infection (CDI) is a health-care-associated infection caused, as the name suggests, by obligate anaerobic pathogen C. difficile and thus mainly transmitted via highly resistant endospores from one person to the other. In vivo, the spores need to germinate into cells prior to establi...

    journal_title:Journal of proteome research

    pub_type: 杂志文章

    doi:10.1021/acs.jproteome.9b00413

    authors: Abhyankar WR,Zheng L,Brul S,de Koster CG,de Koning LJ

    更新日期:2019-11-01 00:00:00

  • Changes in the striatal proteome of YAC128Q mice exhibit gene-environment interactions between mutant huntingtin and manganese.

    abstract::Huntington's disease (HD) is a neurodegenerative disorder caused by expansion of a CAG repeat within the Huntingtin (HTT) gene, though the clinical presentation of disease and age-of-onset are strongly influenced by ill-defined environmental factors. We recently reported a gene-environment interaction wherein expressi...

    journal_title:Journal of proteome research

    pub_type: 杂志文章

    doi:10.1021/pr200839d

    authors: Wegrzynowicz M,Holt HK,Friedman DB,Bowman AB

    更新日期:2012-02-03 00:00:00

  • Identification of Putative Early Atherosclerosis Biomarkers by Unsupervised Deconvolution of Heterogeneous Vascular Proteomes.

    abstract::Coronary artery disease remains a leading cause of death in industrialized nations, and early detection of disease is a critical intervention target to effectively treat patients and manage risk. Proteomic analysis of mixed tissue homogenates may obscure subtle protein changes that occur uniquely in underlying tissue ...

    journal_title:Journal of proteome research

    pub_type: 杂志文章

    doi:10.1021/acs.jproteome.0c00118

    authors: Parker SJ,Chen L,Spivia W,Saylor G,Mao C,Venkatraman V,Holewinski RJ,Mastali M,Pandey R,Athas G,Yu G,Fu Q,Troxlair D,Vander Heide R,Herrington D,Van Eyk JE,Wang Y

    更新日期:2020-07-02 00:00:00

  • Rapid expression of functional genomic libraries.

    abstract::Genomic-scale analysis of protein function is currently limited by the ability to rapidly express the enormous diversity of protein targets in their active form. We describe a method to construct transcriptionally active expression templates (ETs) in parallel using a single PCR step wherein the overlap-extension react...

    journal_title:Journal of proteome research

    pub_type: 杂志文章

    doi:10.1021/pr050459y

    authors: Woodrow KA,Airen IO,Swartz JR

    更新日期:2006-12-01 00:00:00

  • Temporal quantitative proteomics by iTRAQ 2D-LC-MS/MS and corresponding mRNA expression analysis identify post-transcriptional modulation of actin-cytoskeleton regulators during TGF-beta-Induced epithelial-mesenchymal transition.

    abstract::To gain insights into how TGF-beta regulates epithelial-mesenchymal transition (EMT), we assessed the time course of proteins and mRNAs during EMT by multiplex iTRAQ labeling and 2D-LC-MS/MS, and by hybridization, respectively. Temporal iTRAQ analysis identified 66 proteins as differentially expressed during EMT, incl...

    journal_title:Journal of proteome research

    pub_type: 杂志文章

    doi:10.1021/pr8006478

    authors: Keshamouni VG,Jagtap P,Michailidis G,Strahler JR,Kuick R,Reka AK,Papoulias P,Krishnapuram R,Srirangam A,Standiford TJ,Andrews PC,Omenn GS

    更新日期:2009-01-01 00:00:00

  • Quantitative analysis of brain nuclear phosphoproteins identifies developmentally regulated phosphorylation events.

    abstract::Protein phosphorylation is a globally adopted and tightly controlled post-translational modification, and represents one of the most important molecular switching mechanisms that govern the entire spectrum of biological processes. In the central nervous system, it has been demonstrated that phosphorylation of key prot...

    journal_title:Journal of proteome research

    pub_type: 杂志文章

    doi:10.1021/pr8003198

    authors: Liao L,McClatchy DB,Park SK,Xu T,Lu B,Yates JR 3rd

    更新日期:2008-11-01 00:00:00

  • Dynamic omics approach identifies nutrition-mediated microbial interactions.

    abstract::"Omics" studies reported to date have dealt with either thoroughly characterized single species or poorly explored meta-microbial communities. However, these techniques are capable of producing highly informative data for the analysis of interactions between two organisms. We examined the bacterial interaction between...

    journal_title:Journal of proteome research

    pub_type: 杂志文章

    doi:10.1021/pr100989c

    authors: Nakanishi Y,Fukuda S,Chikayama E,Kimura Y,Ohno H,Kikuchi J

    更新日期:2011-02-04 00:00:00

  • Improving metabolite knowledge in stable atherosclerosis patients by association and correlation of GC-MS and 1H NMR fingerprints.

    abstract::The plasma of patients with stable carotid atherosclerosis (n = 9), and healthy subjects (n = 10) have been fingerprinted with both GC-MS and (1)H NMR. Principal component analysis (PCA), partial least-squares-discriminant analysis (PLS-DA) and orthogonal partial least-squares-discriminant analysis (OPLS-DA) have been...

    journal_title:Journal of proteome research

    pub_type: 杂志文章

    doi:10.1021/pr900668v

    authors: Teul J,Rupérez FJ,Garcia A,Vaysse J,Balayssac S,Gilard V,Malet-Martino M,Martin-Ventura JL,Blanco-Colio LM,Tuñón J,Egido J,Barbas C

    更新日期:2009-12-01 00:00:00

  • Quantitative Proteomic and Phosphoproteomic Analysis of H37Ra and H37Rv Strains of Mycobacterium tuberculosis.

    abstract::Mycobacterium tuberculosis, the causative agent of tuberculosis, accounts for 1.5 million human deaths annually worldwide. Despite efforts to eradicate tuberculosis, it still remains a deadly disease. The two best characterized strains of M. tuberculosis, virulent H37Rv and avirulent H37Ra, provide a unique platform t...

    journal_title:Journal of proteome research

    pub_type: 杂志文章

    doi:10.1021/acs.jproteome.6b00983

    authors: Verma R,Pinto SM,Patil AH,Advani J,Subba P,Kumar M,Sharma J,Dey G,Ravikumar R,Buggi S,Satishchandra P,Sharma K,Suar M,Tripathy SP,Chauhan DS,Gowda H,Pandey A,Gandotra S,Prasad TS

    更新日期:2017-04-07 00:00:00

  • Andromeda: a peptide search engine integrated into the MaxQuant environment.

    abstract::A key step in mass spectrometry (MS)-based proteomics is the identification of peptides in sequence databases by their fragmentation spectra. Here we describe Andromeda, a novel peptide search engine using a probabilistic scoring model. On proteome data, Andromeda performs as well as Mascot, a widely used commercial s...

    journal_title:Journal of proteome research

    pub_type: 杂志文章

    doi:10.1021/pr101065j

    authors: Cox J,Neuhauser N,Michalski A,Scheltema RA,Olsen JV,Mann M

    更新日期:2011-04-01 00:00:00

  • Phosphoproteomics reveals the effect of ethylene in soybean root under flooding stress.

    abstract::Flooding has severe negative effects on soybean growth. To explore the flooding-responsive mechanisms in early-stage soybean, a phosphoproteomic approach was used. Two-day-old soybean plants were treated without or with flooding for 3, 6, 12, and 24 h, and root tip proteins were then extracted and analyzed at each tim...

    journal_title:Journal of proteome research

    pub_type: 杂志文章

    doi:10.1021/pr500621c

    authors: Yin X,Sakata K,Komatsu S

    更新日期:2014-12-05 00:00:00

  • An Adaptive Pipeline To Maximize Isobaric Tagging Data in Large-Scale MS-Based Proteomics.

    abstract::Isobaric tagging is the method of choice in mass-spectrometry-based proteomics for comparing several conditions at a time. Despite its multiplexing capabilities, some drawbacks appear when multiple experiments are merged for comparison in large sample-size studies due to the presence of missing values, which result fr...

    journal_title:Journal of proteome research

    pub_type: 杂志文章

    doi:10.1021/acs.jproteome.8b00110

    authors: Corthésy J,Theofilatos K,Mavroudi S,Macron C,Cominetti O,Remlawi M,Ferraro F,Núñez Galindo A,Kussmann M,Likothanassis S,Dayon L

    更新日期:2018-06-01 00:00:00

  • Quantitative Proteomics Reveals Differences in the Response of Neutrophils Isolated from Healthy or Diabetic Subjects to Infection with Capsule-Variant Burkholderia thailandensis.

    abstract::In Thailand, diabetes mellitus is the most significant risk factor for melioidosis, a severe disease caused by Burkholderia pseudomallei. In this study, neutrophils isolated from healthy or diabetic subjects were infected with B. thailandensis E555, a variant strain with a B. pseudomallei-like capsular polysaccharide ...

    journal_title:Journal of proteome research

    pub_type: 杂志文章

    doi:10.1021/acs.jproteome.9b00166

    authors: Withatanung P,Kurian D,Tangjittipokin W,Plengvidhya N,Titball RW,Korbsrisate S,Stevens JM

    更新日期:2019-07-05 00:00:00

  • Self-assembling protein arrays using electronic semiconductor microchips and in vitro translation.

    abstract::Protein arrays will greatly accelerate research and development in medical and biological sciences. We have used cell-free protein biosynthesis and a parallel immobilization strategy for producing protein biochips. We demonstrate a model two-protein microarray using luciferase and green fluorescent protein, both expre...

    journal_title:Journal of proteome research

    pub_type: 杂志文章

    doi:10.1021/pr0300011

    authors: Oleinikov AV,Gray MD,Zhao J,Montgomery DD,Ghindilis AL,Dill K

    更新日期:2003-05-01 00:00:00

  • Deciphering the Molecular Diversity of an Ant Venom Peptidome through a Venomics Approach.

    abstract::The peptide toxins in the venoms of small invertebrates such as stinging ants have rarely been studied due to the limited amount of venom available per individual. We used a venomics strategy to identify the molecular diversity of the venom peptidome for the myrmicine ant Tetramorium bicarinatum. The methodology inclu...

    journal_title:Journal of proteome research

    pub_type: 杂志文章

    doi:10.1021/acs.jproteome.8b00452

    authors: Touchard A,Téné N,Song PCT,Lefranc B,Leprince J,Treilhou M,Bonnafé E

    更新日期:2018-10-05 00:00:00

  • Proteomic Profiling of Fast Neutron-Induced Soybean Mutant Unveiled Pathways Associated with Increased Seed Protein Content.

    abstract::Mutagenesis through fast neutron (FN) radiation of soybean resulted in a mutant with a 15% increase in seed protein content. A comparative genomic hybridization analysis confirmed that the mutant is lacking 24 genes located at chromosomes 5 and 10. A tandem mass tag-based proteomic profiling of the wild type and the F...

    journal_title:Journal of proteome research

    pub_type: 杂志文章

    doi:10.1021/acs.jproteome.0c00160

    authors: Islam N,Krishnan HB,Natarajan S

    更新日期:2020-10-02 00:00:00

  • On-line LC-MS approach combining collision-induced dissociation (CID), electron-transfer dissociation (ETD), and CID of an isolated charge-reduced species for the trace-level characterization of proteins with post-translational modifications.

    abstract::We have expanded our recent on-line LC-MS platform for large peptide analysis to combine collision-induced dissociation (CID), electron-transfer dissociation (ETD), and CID of an isolated charge-reduced (CRCID) species derived from ETD to determine sites of phosphorylation and glycosylation modifications, as well as t...

    journal_title:Journal of proteome research

    pub_type: 杂志文章

    doi:10.1021/pr070313u

    authors: Wu SL,Hühmer AF,Hao Z,Karger BL

    更新日期:2007-11-01 00:00:00

  • Proteomics analysis reveals novel components in the detergent-insoluble subproteome in Alzheimer's disease.

    abstract::Neurodegenerative diseases are often defined pathologically by the presence of protein aggregates. These aggregates, including amyloid plaques in Alzheimer's disease (AD), result from the abnormal accumulation and processing of proteins, and may ultimately lead to neuronal dysfunction and cell death. To date, conventi...

    journal_title:Journal of proteome research

    pub_type: 杂志文章

    doi:10.1021/pr900474t

    authors: Gozal YM,Duong DM,Gearing M,Cheng D,Hanfelt JJ,Funderburk C,Peng J,Lah JJ,Levey AI

    更新日期:2009-11-01 00:00:00

  • Advances in Higher Order Multiplexing Techniques in Proteomics.

    abstract::Proteomics by mass spectrometry (MS) allows the large-scale identification and quantitation of the cellular proteins in a given biological context. Systems biology studies from proteomics data are largely limited by the accuracy and coverage of quantitative proteomics along with missing values. Toward this end, statis...

    journal_title:Journal of proteome research

    pub_type: 杂志文章,评审

    doi:10.1021/acs.jproteome.9b00228

    authors: Aggarwal S,Talukdar NC,Yadav AK

    更新日期:2019-06-07 00:00:00

  • Combination of LC-MS- and GC-MS-based metabolomics to study the effect of ozonated autohemotherapy on human blood.

    abstract::Ozonated autohemotherapy (O3-AHT) is a medical approach during which blood obtained from the patient is ozonated and injected back into the body. Despite an increasing number of evidence that O3-AHT is safe, this type of therapy remains controversial. To extend knowledge about the changes in blood evoked by O3-AHT, LC...

    journal_title:Journal of proteome research

    pub_type: 杂志文章

    doi:10.1021/pr3008946

    authors: Ciborowski M,Lipska A,Godzien J,Ferrarini A,Korsak J,Radziwon P,Tomasiak M,Barbas C

    更新日期:2012-12-07 00:00:00

  • Integrative analysis of N-linked human glycoproteomic data sets reveals PTPRF ectodomain as a novel plasma biomarker candidate for prostate cancer.

    abstract::In an attempt to identify prostate cancer biomarkers with greater diagnostic and prognostic capabilities, we have developed an integrative proteomic discovery workflow focused on N-linked glycoproteins that refines the target selection process. In this work, hydrazide-based chemistry was used to identify N-linked glyc...

    journal_title:Journal of proteome research

    pub_type: 杂志文章

    doi:10.1021/pr201200n

    authors: Whitmore TE,Peterson A,Holzman T,Eastham A,Amon L,McIntosh M,Ozinsky A,Nelson PS,Martin DB

    更新日期:2012-05-04 00:00:00

  • Quantitation by isobaric labeling: applications to glycomics.

    abstract::The study of glycosylation patterns (glycomics) in biological samples is an emerging field that can provide key insights into cell development and pathology. A current challenge in the field of glycomics is to determine how to quantify changes in glycan expression between different cells, tissues, or biological fluids...

    journal_title:Journal of proteome research

    pub_type: 杂志文章

    doi:10.1021/pr070476i

    authors: Atwood JA 3rd,Cheng L,Alvarez-Manilla G,Warren NL,York WS,Orlando R

    更新日期:2008-01-01 00:00:00

  • Limits for Resolving Isobaric Tandem Mass Tag Reporter Ions Using Phase-Constrained Spectrum Deconvolution.

    abstract::A popular method for peptide quantification relies on isobaric labeling such as tandem mass tags (TMT), which enables multiplexed proteome analyses. Quantification is achieved by reporter ions generated by fragmentation in a tandem mass spectrometer. However, with higher degrees of multiplexing, the smaller mass diffe...

    journal_title:Journal of proteome research

    pub_type: 杂志文章

    doi:10.1021/acs.jproteome.8b00381

    authors: Kelstrup CD,Aizikov K,Batth TS,Kreutzman A,Grinfeld D,Lange O,Mourad D,Makarov AA,Olsen JV

    更新日期:2018-11-02 00:00:00

  • PanelComposer: a web-based panel construction tool for multivariate analysis of disease biomarker candidates.

    abstract::Measuring and evaluating diagnostic efficiency is important in biomarker discovery and validation. The receiver operating characteristic (ROC) curve is a graphical plot for assessing the performance of a classifier or predictor that can be used to test the sensitivity and specificity of diagnostic biomarkers. In this ...

    journal_title:Journal of proteome research

    pub_type: 杂志文章

    doi:10.1021/pr3004387

    authors: Jeong SK,Na K,Kim KY,Kim H,Paik YK

    更新日期:2012-12-07 00:00:00