CTC1-mediated C-strand fill-in is an essential step in telomere length maintenance.

Abstract:

:To prevent progressive telomere shortening as a result of conventional DNA replication, new telomeric DNA must be added onto the chromosome end. The de novo DNA synthesis involves elongation of the G-rich strand of the telomere by telomerase. In human cells, the CST complex (CTC1-STN1-TEN1) also functions in telomere replication. CST first aids in duplication of the telomeric dsDNA. Then after telomerase has extended the G-rich strand, CST facilitates fill-in synthesis of the complementary C-strand. Here, we analyze telomere structure after disruption of human CTC1 and demonstrate that functional CST is essential for telomere length maintenance due to its role in mediating C-strand fill-in. Removal of CTC1 results in elongation of the 3΄ overhang on the G-rich strand. This leads to accumulation of RPA and telomeric DNA damage signaling. G-overhang length increases with time after CTC1 disruption and at early times net G-strand growth is apparent, indicating telomerase-mediated G-strand extension. In contrast, C-strand length decreases continuously, indicating a deficiency in C-strand fill-in synthesis. The lack of C-strand maintenance leads to gradual shortening of the telomeric dsDNA, similar to that observed in cells lacking telomerase. Thus, telomerase-mediated G-strand extension and CST-mediated C-strand fill-in are equally important for telomere length maintenance.

journal_name

Nucleic Acids Res

journal_title

Nucleic acids research

authors

Feng X,Hsu SJ,Kasbek C,Chaiken M,Price CM

doi

10.1093/nar/gkx125

subject

Has Abstract

pub_date

2017-05-05 00:00:00

pages

4281-4293

issue

8

eissn

0305-1048

issn

1362-4962

pii

3038240

journal_volume

45

pub_type

杂志文章
  • In vitro 3'-end endonucleolytic processing defect in a human mitochondrial tRNA(Ser(UCN)) precursor with the U7445C substitution, which causes non-syndromic deafness.

    abstract::Eukaryotic tRNAs are transcribed as precursors. A 5'-end leader and 3'-end trailer are endonucleolytically removed by RNase P and 3'-tRNase before 3'-end CCA addition, aminoacylation, nuclear export and translation. 3'-End -CC can be a 3'-tRNase anti-determinant with the ability to prevent mature tRNA from recycling t...

    journal_title:Nucleic acids research

    pub_type: 杂志文章

    doi:10.1093/nar/29.21.4334

    authors: Levinger L,Jacobs O,James M

    更新日期:2001-11-01 00:00:00

  • MiR-210 disturbs mitotic progression through regulating a group of mitosis-related genes.

    abstract::MiR-210 is up-regulated in multiple cancer types but its function is disputable and further investigation is necessary. Using a bioinformatics approach, we identified the putative target genes of miR-210 in hypoxia-induced CNE cells from genome-wide scale. Two functional gene groups related to cell cycle and RNA proce...

    journal_title:Nucleic acids research

    pub_type: 杂志文章

    doi:10.1093/nar/gks995

    authors: He J,Wu J,Xu N,Xie W,Li M,Li J,Jiang Y,Yang BB,Zhang Y

    更新日期:2013-01-07 00:00:00

  • Open complex formation during transcription initiation at the Escherichia coli galP1 promoter: the role of the RNA polymerase alpha subunit at promoters lacking an UP-element.

    abstract::We have studied the role of the C-terminal domain of the alpha subunit (alphaCTD) of Escherichia coli RNA polymerase during transcription initiation at promoters lacking an UP-element. The temperature requirement for open complex formation was used as an indication of the kinetics of this process. We have previously s...

    journal_title:Nucleic acids research

    pub_type: 杂志文章

    doi:10.1093/nar/27.9.2051

    authors: Burns HD,Ishihama A,Minchin SD

    更新日期:1999-05-01 00:00:00

  • Isolation and characterization of plasmids carrying a partially defective Escherichia coli replication origin.

    abstract::The replication origin (oriC) of the Escherichia coli chromosome has been cloned and the region essential for chromosomal replication has been delimited to 245 base pairs. In previous studies the ability of recombinants between oriC and ColE1-type vectors, to transform E. coli polA- strains was used to determine which...

    journal_title:Nucleic acids research

    pub_type: 杂志文章

    doi:10.1093/nar/11.22.8007

    authors: Stuitje AR,Meijer M

    更新日期:1983-11-25 00:00:00

  • Cloning and sequence determination of the Schizosaccharomyces pombe rpb1 gene encoding the largest subunit of RNA polymerase II.

    abstract::The gene, rpb1, encoding the largest subunit of RNA polymerase II has been cloned from Schizosaccharomyces pombe using the corresponding gene, RPB1, of Saccharomyces cerevisiae as a cross-hybridization probe. We have determined the complete sequence of this gene, and parts of PCR-amplified rpb1 cDNA. The predicted cod...

    journal_title:Nucleic acids research

    pub_type: 杂志文章

    doi:10.1093/nar/19.3.461

    authors: Azuma Y,Yamagishi M,Ueshima R,Ishihama A

    更新日期:1991-02-11 00:00:00

  • Analysis of the gene encoding the RNA subunit of ribonuclease P from cyanobacteria.

    abstract::The genes encoding the RNA subunit of ribonuclease P from the unicellular cyanobacterium Synechocystis sp. PCC 6803, and from the heterocyst-forming strains Anabaena sp. PCC 7120 and Calothrix sp. PCC 7601 were cloned using the homologous gene from Anacystis nidulans (Synechococcus sp. PCC 6301) as a probe. The genes ...

    journal_title:Nucleic acids research

    pub_type: 杂志文章

    doi:10.1093/nar/20.23.6331

    authors: Vioque A

    更新日期:1992-12-11 00:00:00

  • Histone chaperone HIRA deposits histone H3.3 onto foreign viral DNA and contributes to anti-viral intrinsic immunity.

    abstract::The HIRA histone chaperone complex deposits histone H3.3 into nucleosomes in a DNA replication- and sequence-independent manner. As herpesvirus genomes enter the nucleus as naked DNA, we asked whether the HIRA chaperone complex affects herpesvirus infection. After infection of primary cells with HSV or CMV, or transie...

    journal_title:Nucleic acids research

    pub_type: 杂志文章

    doi:10.1093/nar/gkx771

    authors: Rai TS,Glass M,Cole JJ,Rather MI,Marsden M,Neilson M,Brock C,Humphreys IR,Everett RD,Adams PD

    更新日期:2017-11-16 00:00:00

  • CRISPR interference and priming varies with individual spacer sequences.

    abstract::CRISPR-Cas (clustered regularly interspaced short palindromic repeats-CRISPR associated) systems allow bacteria to adapt to infection by acquiring 'spacer' sequences from invader DNA into genomic CRISPR loci. Cas proteins use RNAs derived from these loci to target cognate sequences for destruction through CRISPR inter...

    journal_title:Nucleic acids research

    pub_type: 杂志文章

    doi:10.1093/nar/gkv1259

    authors: Xue C,Seetharam AS,Musharova O,Severinov K,Brouns SJ,Severin AJ,Sashital DG

    更新日期:2015-12-15 00:00:00

  • RNA secondary structure regulates the translation of sxy and competence development in Haemophilus influenzae.

    abstract::The sxy (tfoX) gene product is the central regulator of DNA uptake by naturally competent gamma-proteobacteria such as Haemophilus influenzae, Vibrio cholerae and probably Escherichia coli. However, the mechanisms regulating sxy gene expression are not understood despite being key to understanding the physiological ro...

    journal_title:Nucleic acids research

    pub_type: 杂志文章

    doi:10.1093/nar/gkm915

    authors: Cameron AD,Volar M,Bannister LA,Redfield RJ

    更新日期:2008-01-01 00:00:00

  • A sequence-specific core promoter-binding transcription factor recruits TRF2 to coordinately transcribe ribosomal protein genes.

    abstract::Ribosomal protein (RP) genes must be coordinately expressed for proper assembly of the ribosome yet the mechanisms that control expression of RP genes in metazoans are poorly understood. Recently, TATA-binding protein-related factor 2 (TRF2) rather than the TATA-binding protein (TBP) was found to function in transcrip...

    journal_title:Nucleic acids research

    pub_type: 杂志文章

    doi:10.1093/nar/gkx676

    authors: Baumann DG,Gilmour DS

    更新日期:2017-10-13 00:00:00

  • Circularized synthetic oligodeoxynucleotides serve as promoterless RNA polymerase III templates for small RNA generation in human cells.

    abstract::Synthetic RNA formulations and viral vectors are the two main approaches for delivering small therapeutic RNA to human cells. Here we report findings supporting an alternative strategy in which an endogenous human RNA polymerase (RNAP) is harnessed to make RNA hairpin-containing small RNA from synthetic single-strande...

    journal_title:Nucleic acids research

    pub_type: 杂志文章

    doi:10.1093/nar/gks1334

    authors: Seidl CI,Lama L,Ryan K

    更新日期:2013-02-01 00:00:00

  • A novel human cytochrome P450 gene (P450IIB): chromosomal localization and evidence for alternative splicing.

    abstract::We have isolated from a single human liver cDNA library two clones which are highly homologous (78% over the coding region) to the major phenobarbital-inducible P450 from rat (P450IIB1). This is the first direct demonstration of the presence of the P450IIB gene subfamily in humans. This subfamily is much less extensiv...

    journal_title:Nucleic acids research

    pub_type: 杂志文章

    doi:10.1093/nar/16.13.5783

    authors: Miles JS,Spurr NK,Gough AC,Jowett T,McLaren AW,Brook JD,Wolf CR

    更新日期:1988-07-11 00:00:00

  • Comparative whole genome transcriptome analysis of three Plasmodium falciparum strains.

    abstract::Gene expression patterns have been demonstrated to be highly variable between similar cell types, for example lab strains and wild strains of Saccharomyces cerevisiae cultured under identical growth conditions exhibit a wide range of expression differences. We have used a genome-wide approach to characterize transcrip...

    journal_title:Nucleic acids research

    pub_type: 杂志文章

    doi:10.1093/nar/gkj517

    authors: Llinás M,Bozdech Z,Wong ED,Adai AT,DeRisi JL

    更新日期:2006-02-21 00:00:00

  • RNABindR: a server for analyzing and predicting RNA-binding sites in proteins.

    abstract::Understanding interactions between proteins and RNA is key to deciphering the mechanisms of many important biological processes. Here we describe RNABindR, a web-based server that identifies and displays RNA-binding residues in known protein-RNA complexes and predicts RNA-binding residues in proteins of unknown struct...

    journal_title:Nucleic acids research

    pub_type: 杂志文章

    doi:10.1093/nar/gkm294

    authors: Terribilini M,Sander JD,Lee JH,Zaback P,Jernigan RL,Honavar V,Dobbs D

    更新日期:2007-07-01 00:00:00

  • Genome-wide evidence for local DNA methylation spreading from small RNA-targeted sequences in Arabidopsis.

    abstract::Transposable elements (TEs) and their relics play major roles in genome evolution. However, mobilization of TEs is usually deleterious and strongly repressed. In plants and mammals, this repression is typically associated with DNA methylation, but the relationship between this epigenetic mark and TE sequences has not ...

    journal_title:Nucleic acids research

    pub_type: 杂志文章

    doi:10.1093/nar/gkr324

    authors: Ahmed I,Sarazin A,Bowler C,Colot V,Quesneville H

    更新日期:2011-09-01 00:00:00

  • Assembly, nuclear import and function of U7 snRNPs studied by microinjection of synthetic U7 RNA into Xenopus oocytes.

    abstract::In Xenopus oocytes in vitro transcribed mouse U7 RNA is assembled into small nuclear ribonucleoproteins (snRNPs) that are functional in histone RNA 3' processing. If the special Sm binding site of U7 (AAUUUGUCUAG, U7 Sm WT) is converted into the canonical Sm sequence derived from the major snRNAs (AAUUUUUGGAG, U7 Sm O...

    journal_title:Nucleic acids research

    pub_type: 杂志文章

    doi:10.1093/nar/23.16.3141

    authors: Stefanovic B,Hackl W,Lührmann R,Schümperli D

    更新日期:1995-08-25 00:00:00

  • In vitro selection to identify determinants in tRNA for Bacillus subtilis tyrS T box antiterminator mRNA binding.

    abstract::The T box transcription antitermination regulatory system, found in Gram-positive bacteria, is dependent on a complex set of interactions between uncharged tRNA and the 5'-untranslated mRNA leader region of the regulated gene. One of these interactions involves the base pairing of the acceptor end of cognate tRNA with...

    journal_title:Nucleic acids research

    pub_type: 杂志文章

    doi:10.1093/nar/gki546

    authors: Fauzi H,Jack KD,Hines JV

    更新日期:2005-05-06 00:00:00

  • Optimization of a novel biophysical model using large scale in vivo antisense hybridization data displays improved prediction capabilities of structurally accessible RNA regions.

    abstract::Current approaches to design efficient antisense RNAs (asRNAs) rely primarily on a thermodynamic understanding of RNA-RNA interactions. However, these approaches depend on structure predictions and have limited accuracy, arguably due to overlooking important cellular environment factors. In this work, we develop a bio...

    journal_title:Nucleic acids research

    pub_type: 杂志文章

    doi:10.1093/nar/gkx115

    authors: Vazquez-Anderson J,Mihailovic MK,Baldridge KC,Reyes KG,Haning K,Cho SH,Amador P,Powell WB,Contreras LM

    更新日期:2017-05-19 00:00:00

  • Rolling circle amplification shows a sinusoidal template length-dependent amplification bias.

    abstract::Biophysical properties of DNA such as its longitudinal and torsional persistence length govern many processes and phenomena in biology, DNA nanotechnology and biotechnology. It has, for example, long been known that the circularization efficiency of short DNA fragments shows a periodic pattern where fragments with int...

    journal_title:Nucleic acids research

    pub_type: 杂志文章

    doi:10.1093/nar/gkx1238

    authors: Joffroy B,Uca YO,Prešern D,Doye JPK,Schmidt TL

    更新日期:2018-01-25 00:00:00

  • Distribution of the modified nucleoside Q and its derivatives in animal and plant transfer RNA's.

    abstract::The modified nucleoside, 7-(4,5-cis-dihydroxy-1-cyclopenten-3-yl-aminomethyl)-7-deazaguanosine, designated as Q, and its derivative, Q*, were found in tRNA's from various organisms, including several mammalian tissues, other animals such as starfish, lingula and hagfish, and wheat germ. Q isolated from rat liver tRNA ...

    journal_title:Nucleic acids research

    pub_type: 杂志文章

    doi:10.1093/nar/2.10.1931

    authors: Kasai H,Kuchino Y,Nihei K,Nishimura S

    更新日期:1975-10-01 00:00:00

  • Integrative transcriptome sequencing reveals extensive alternative trans-splicing and cis-backsplicing in human cells.

    abstract::Transcriptionally non-co-linear (NCL) transcripts can originate from trans-splicing (trans-spliced RNA; 'tsRNA') or cis-backsplicing (circular RNA; 'circRNA'). While numerous circRNAs have been detected in various species, tsRNAs remain largely uninvestigated. Here, we utilize integrative transcriptome sequencing of p...

    journal_title:Nucleic acids research

    pub_type: 杂志文章

    doi:10.1093/nar/gky032

    authors: Chuang TJ,Chen YJ,Chen CY,Mai TL,Wang YD,Yeh CS,Yang MY,Hsiao YT,Chang TH,Kuo TC,Cho HH,Shen CN,Kuo HC,Lu MY,Chen YH,Hsieh SC,Chiang TW

    更新日期:2018-04-20 00:00:00

  • NMR structure of a vestigial nuclease provides insight into the evolution of functional transitions in viral dsDNA packaging motors.

    abstract::Double-stranded DNA viruses use ATP-powered molecular motors to package their genomic DNA. To ensure efficient genome encapsidation, these motors regulate functional transitions between initiation, translocation, and termination modes. Here, we report structural and biophysical analyses of the C-terminal domain of the...

    journal_title:Nucleic acids research

    pub_type: 杂志文章

    doi:10.1093/nar/gkaa874

    authors: Mahler BP,Bujalowski PJ,Mao H,Dill EA,Jardine PJ,Choi KH,Morais MC

    更新日期:2020-11-18 00:00:00

  • Ubiquitin mRNA is a major stress-induced transcript in mammalian cells.

    abstract::Ubiquitin mRNA was found to be an abundant transcript which was induced by heat shock (HS), and certain other stresses in mammalian cells. In Chinese hamster cells, the 2 major ubiquitin transcripts of 2.6 kb and 1.7 kb were induced coordinately, while a minor ubiquitin transcript of 0.8 kb was not induced; the respon...

    journal_title:Nucleic acids research

    pub_type: 杂志文章

    doi:10.1093/nar/17.3.1215

    authors: Fornace AJ Jr,Alamo I Jr,Hollander MC,Lamoreaux E

    更新日期:1989-02-11 00:00:00

  • The versatile thymine DNA-glycosylase: a comparative characterization of the human, Drosophila and fission yeast orthologs.

    abstract::Human thymine-DNA glycosylase (TDG) is well known to excise thymine and uracil from G.T and G.U mismatches, respectively, and was therefore proposed to play a central role in the cellular defense against genetic mutation through spontaneous deamination of 5-methylcytosine and cytosine. In this study, we characterized ...

    journal_title:Nucleic acids research

    pub_type: 杂志文章

    doi:10.1093/nar/gkg344

    authors: Hardeland U,Bentele M,Jiricny J,Schär P

    更新日期:2003-05-01 00:00:00

  • CITED2 silencing sensitizes cancer cells to cisplatin by inhibiting p53 trans-activation and chromatin relaxation on the ERCC1 DNA repair gene.

    abstract::In this study, we show that silencing of CITED2 using small-hairpin RNA (shCITED2) induced DNA damage and reduction of ERCC1 gene expression in HEK293, HeLa and H1299 cells, even in the absence of cisplatin. In contrast, ectopic expression of ERCC1 significantly reduced intrinsic and induced DNA damage levels, and res...

    journal_title:Nucleic acids research

    pub_type: 杂志文章

    doi:10.1093/nar/gkv934

    authors: Liu YC,Chang PY,Chao CC

    更新日期:2015-12-15 00:00:00

  • Upstream box/TATA box order is the major determinant of the direction of transcription.

    abstract::Mammalian gene promoters for transcription by RNA polymerase II are typically organized in the following order: upstream sequence motif(s)/TATA box/initiation site. Here we report studies in which the order, orientation and DNA sequences of these three elements are varied to determine how these affect polarity of tran...

    journal_title:Nucleic acids research

    pub_type: 杂志文章

    doi:10.1093/nar/19.24.6699

    authors: Xu LC,Thali M,Schaffner W

    更新日期:1991-12-25 00:00:00

  • Evidence that RNA editing modulates splice site selection in the 5-HT2C receptor gene.

    abstract::Adenosine to inosine editing of mRNA from the human 5-HT2C receptor gene (HTR2C) occurs at five exonic positions (A-E) in a stable stem-loop that includes the normal 5' splice site of intron 5 and is flanked by two alternative splice sites. Using in vitro editing, we identified a novel editing site (F) located in the ...

    journal_title:Nucleic acids research

    pub_type: 杂志文章

    doi:10.1093/nar/gkh536

    authors: Flomen R,Knight J,Sham P,Kerwin R,Makoff A

    更新日期:2004-04-15 00:00:00

  • Recognition of native DNA methylation by the PvuII restriction endonuclease.

    abstract::Recognizing the methylation status of specific DNA sequences is central to the function of many systems in eukaryotes and prokaryotes. Restriction-modification systems have to distinguish between 'self' and 'non-self' DNA and depend on the inability of restriction endonucleases to cleave their DNA substrates when the ...

    journal_title:Nucleic acids research

    pub_type: 杂志文章

    doi:10.1093/nar/28.16.3143

    authors: Rice MR,Blumenthal RM

    更新日期:2000-08-15 00:00:00

  • RNA editing in the acceptor stem of squid mitochondrial tRNA(Tyr).

    abstract::In squid (Loligo bleekeri) mitochondria, the two 3'-terminal nucleotides (G72-G73) of the tRNA(Tyr) gene overlap with the two 5'-terminal nucleotides (G1-G2) of the downstream tRNA(Cys) gene. To elucidate the processing mechanism(s) of the tRNA molecules derived from this region, tRNAs were analyzed by sequencing cDNA...

    journal_title:Nucleic acids research

    pub_type: 杂志文章

    doi:10.1093/nar/24.24.4987

    authors: Tomita K,Ueda T,Watanabe K

    更新日期:1996-12-15 00:00:00

  • Ancestral Genomes: a resource for reconstructed ancestral genes and genomes across the tree of life.

    abstract::A growing number of whole genome sequencing projects, in combination with development of phylogenetic methods for reconstructing gene evolution, have provided us with a window into genomes that existed millions, and even billions, of years ago. Ancestral Genomes (http://ancestralgenomes.org) is a resource for comprehe...

    journal_title:Nucleic acids research

    pub_type: 杂志文章

    doi:10.1093/nar/gky1009

    authors: Huang X,Albou LP,Mushayahama T,Muruganujan A,Tang H,Thomas PD

    更新日期:2019-01-08 00:00:00